Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Value Type Gene description Interaction Map Network Comparison Type red green Filtered network_comparison
Results: HTML CSV LaTeX Showing element 551 to 600 of 29840 in total 
Interaction Map: High confidence

\def\wcA{0.11111111111111\textwidth}
\def\wcB{0.11111111111111\textwidth}
\def\wcC{0.11111111111111\textwidth}
\def\wcD{0.11111111111111\textwidth}
\def\wcE{0.11111111111111\textwidth}
\def\wcF{0.11111111111111\textwidth}
\def\wcG{0.11111111111111\textwidth}
\def\wcH{0.11111111111111\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
Filtered\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{10}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
35\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
nuclear dna-binding protein; small unique nuclear receptor corepressor; c1d dna-binding protein. [source:refseq;acc:nm\_006333]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
3208.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4871.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.5182\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
nuclear transcription factor y subunit gamma (nf-y protein chain c) (nuclear factor yc) (nf-yc) (ccaat-binding transcription factor subunit c) (cbf-c) (transactivator hsm-1/2). [source:swissprot;acc:q13952]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
260.532\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
204.309\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.27519\vspace{3pt}}\\\cline{2-3}\cline{5-6}\cline{8-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
28s ribosomal protein s17, mitochondrial precursor (mrp-s17) (hspc011). [source:swissprot;acc:q9y2r5]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
106226\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
192141\vspace{3pt}}&&\parbox{\wcH}{\vspace{3pt}\noindent
1.80879\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
adp,atp carrier protein, liver isoform t2 (adp/atp translocase 3) (adenine nucleotide translocator 3) (ant 3). [source:swissprot;acc:p12236]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
50.7031\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
647.816\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent
12.7767\vspace{3pt}}\\\cline{3-6}\cline{8-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
bystin. [source:swissprot;acc:q13895]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
26569.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
32857.7\vspace{3pt}}&&\parbox{\wcH}{\vspace{3pt}\noindent
6288\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
mitochondrial solute carrier protein. [source:refseq;acc:nm\_145305]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
106226\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
192141\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent
85915\vspace{3pt}}\\\cline{2-3}\cline{5-6}\cline{8-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
apg3p; pc3-96 protein. [source:refseq;acc:nm\_022488]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
140.508\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
122.878\vspace{3pt}}&&\parbox{\wcH}{\vspace{3pt}\noindent
17.63\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
beta-carotene dioxygenase 2; putative b,b-carotene-9',10'-dioxygenase. [source:refseq;acc:nm\_031938]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
23.8747\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
11.7898\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.02503\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(q), alpha subunit. [source:swissprot;acc:p50148]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
40.2812\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
24.3679\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.65304\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
serpin b12. [source:swissprot;acc:q96p63]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10.2928\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.18697\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
9.10583\vspace{3pt}}\\\hline
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
36\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(z), alpha subunit (g(x) alpha chain) (gz-alpha). [source:swissprot;acc:p19086]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
1836.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
907.741\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.02344\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
heparan sulfate 6-o-sulfotransferase 2. [source:refseq;acc:nm\_147174]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
157\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
56\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.80357\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
melanoma-associated antigen 12 (mage-12 antigen) (mage12f). [source:swissprot;acc:p43365]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18263\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5430.7\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
oligosaccharyl transferase stt3 subunit homolog (b5) (integral membrane protein 1) (tmc). [source:swissprot;acc:p46977]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
1586.07\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
925.298\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
660.772\vspace{3pt}}\\\cline{2-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
ccaat-binding transcription factor subunit b (cbf-b) (nf-y protein chain a) (nf-ya) (caat-box dna binding protein subunit a). [source:swissprot;acc:p23511]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
260.532\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
204.309\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.27519\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein beta subunit-like protein 1 (g protein beta-subunit like protein 1) (wd40 repeat containing protein deleted in vcfs) (wdvcf protein) (fksg1 protein) (dgcrk3). [source:swissprot;acc:q9byb4]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
22422\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
14964\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.4984\vspace{3pt}}\\\cline{3-6}\cline{8-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
nucleosome assembly protein 1-like 4 (nucleosome assembly protein 2) (nap2). [source:swissprot;acc:q99733]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
13292.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8691.76\vspace{3pt}}&&\parbox{\wcH}{\vspace{3pt}\noindent
4600.44\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
protein kinase, interferon-inducible double stranded rna dependent activator; protein activator of the interferon-induced protein kinase. [source:refseq;acc:nm\_003690]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
320.927\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
254.434\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
66.493\vspace{3pt}}\\\cline{2-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
cell division protein kinase 8 (ec 2.7.1.-) (protein kinase k35). [source:swissprot;acc:p49336]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
84.64\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8.01325\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10.5625\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
cleavage and polyadenylation specific factor 4, 30kd subunit; cleavage-polyadenylation specificity factor, 30kd; no arches-like (zebrafish) zinc finger protein; cleavage-polyadenylation specificity factor. [source:refseq;acc:nm\_006693]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
227160\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
146079\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
81081\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
huntingtin interacting protein e; huntingtin interactor protein e. [source:refseq;acc:nm\_007076]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
363053\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
369010\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5957\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
pantothenate kinase 1 (ec 2.7.1.33) (pantothenic acid kinase 1) (hpank1) (hpank). [source:swissprot;acc:q8te04]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
106226\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
192141\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.80879\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
4-aminobutyrate aminotransferase, mitochondrial precursor (ec 2.6.1.19) (gamma-amino-n-butyrate transaminase) (gaba transaminase) (gaba aminotransferase) (gaba-at) (gaba-t). [source:swissprot;acc:p80404]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
4.30525\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2.18581\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.96964\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(z), alpha subunit (g(x) alpha chain) (gz-alpha). [source:swissprot;acc:p19086]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
40.2805\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
24.369\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.65294\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
hurpin (hacat uv-repressible serpin) (protease inhibitor 13) (headpin) (serpin b13). [source:swissprot;acc:q9uiv8]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
10.3085\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.2188\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
9.0897\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
protein phosphatase 1, regulatory (inhibitor) subunit 14a; 17-kda pkc-potentiated inhibitory protein of pp1. [source:refseq;acc:nm\_033256]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
26.0288\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
43.1914\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
17.1626\vspace{3pt}}\\\hline
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
37\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
1,4-alpha-glucan branching enzyme (ec 2.4.1.18) (glycogen branching enzyme) (brancher enzyme). [source:swissprot;acc:q04446]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
334.401\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
934.348\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.79409\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(t), alpha-1 subunit (transducin alpha-1 chain). [source:swissprot;acc:p11488]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
1836.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
907.763\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.02339\vspace{3pt}}\\\cline{3-6}\cline{8-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
melanoma-associated antigen 1 (mage-1 antigen) (antigen mz2-e). [source:swissprot;acc:p43355]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18263\vspace{3pt}}&&\parbox{\wcH}{\vspace{3pt}\noindent
5430.7\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
wiskott-aldrich syndrome protein family member 3 (wasp-family protein member 3) (verprolin homology domain-containing protein 3). [source:swissprot;acc:q9upy6]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
5202.89\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4550.64\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent
652.25\vspace{3pt}}\\\cline{2-6}\cline{8-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
dj570f3.6 (novel protein similar to lysophospholipase ii (lypla2)). [source:sptrembl;acc:q9uge0]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
3859\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2582\vspace{3pt}}&&\parbox{\wcH}{\vspace{3pt}\noindent
1.49458\vspace{3pt}}\\\cline{3-6}\cline{8-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
dystrobrevin binding protein 1; dysbindin. [source:refseq;acc:nm\_032122]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
12128.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7533.33\vspace{3pt}}&&\parbox{\wcH}{\vspace{3pt}\noindent
4594.97\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i)/g(s)/g(t) beta subunit 1 (transducin beta chain 1). [source:swissprot;acc:p04901]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
266.716\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
333.165\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent
66.449\vspace{3pt}}\\\cline{3-6}\cline{8-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
protein phosphatase 1, regulatory (inhibitor) subunit 14a; 17-kda pkc-potentiated inhibitory protein of pp1. [source:refseq;acc:nm\_033256]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
322\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
253\vspace{3pt}}&&\parbox{\wcH}{\vspace{3pt}\noindent
1.27273\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
1,4-alpha-glucan branching enzyme (ec 2.4.1.18) (glycogen branching enzyme) (brancher enzyme). [source:swissprot;acc:q04446]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
101.05\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1034.13\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent
10.2338\vspace{3pt}}\\\cline{3-6}\cline{8-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
dyskerin (nucleolar protein nap57) (cbf5 homolog). [source:swissprot;acc:o60832]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32413.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
38271.3\vspace{3pt}}&&\parbox{\wcH}{\vspace{3pt}\noindent
5857.6\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
pantothenate kinase 2, mitochondrial precursor (ec 2.7.1.33) (pantothenic acid kinase 2) (hpank2). [source:swissprot;acc:q9bz23]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
106226\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
192141\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.80879\vspace{3pt}}\\\cline{3-6}\cline{8-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
trs85 homolog. [source:swissprot;acc:q9y2l5]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
227160\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
146079\vspace{3pt}}&&\parbox{\wcH}{\vspace{3pt}\noindent
81081\vspace{3pt}}\\\cline{2-6}\cline{8-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(t), alpha-1 subunit (transducin alpha-1 chain). [source:swissprot;acc:p11488]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
40.2805\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
24.3691\vspace{3pt}}&&\parbox{\wcH}{\vspace{3pt}\noindent
1.65293\vspace{3pt}}\\\cline{3-6}\cline{8-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
microfibril-associated glycoprotein 4 precursor. [source:swissprot;acc:p55083]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
26.0288\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
43.1914\vspace{3pt}}&&\parbox{\wcH}{\vspace{3pt}\noindent
17.1626\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
nadh-ubiquinone oxidoreductase 13 kda-b subunit (ec 1.6.5.3) (ec 1.6.99.3) (complex i-13kd-b) (ci-13kd-b) (complex i subunit b13). [source:swissprot;acc:q16718]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
16.3095\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
25.3969\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent
9.0874\vspace{3pt}}\\\cline{3-6}\cline{8-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein associated proteins b and b' (snrnp-b) (sm protein b/b') (sm-b/sm-b') (smb/smb'). [source:swissprot;acc:p14678]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4.83477\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
9.39626\vspace{3pt}}&&\parbox{\wcH}{\vspace{3pt}\noindent
1.94348\vspace{3pt}}\\\cline{1-6}\cline{8-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
38\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
clathrin heavy chain 2 (clh-22). [source:swissprot;acc:p53675]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5497.01\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6127.24\vspace{3pt}}&&\parbox{\wcH}{\vspace{3pt}\noindent
630.23\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(t), alpha-2 subunit (transducin alpha-2 chain). [source:swissprot;acc:p19087]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1836.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
907.774\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.02337\vspace{3pt}}\\\cline{3-6}\cline{8-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
melanoma-associated antigen 10 (mage-10 antigen). [source:swissprot;acc:p43363]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18263\vspace{3pt}}&&\parbox{\wcH}{\vspace{3pt}\noindent
5430.7\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
zinc finger protein slug (neural crest transcription factor slug) (snail homolog 2). [source:swissprot;acc:o43623]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
320.012\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
120.429\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.65727\vspace{3pt}}\\\cline{2-3}\cline{5-6}\cline{8-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
cell division protein kinase 8 (ec 2.7.1.-) (protein kinase k35). [source:swissprot;acc:p49336]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
7230\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
10771\vspace{3pt}}&&\parbox{\wcH}{\vspace{3pt}\noindent
1.48976\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein beta subunit 4 (transducin beta chain 4). [source:swissprot;acc:q9hav0]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
266.933\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
333.281\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent
66.348\vspace{3pt}}\\\cline{3-6}\cline{8-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
microfibril-associated glycoprotein 4 precursor. [source:swissprot;acc:p55083]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
322\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
253\vspace{3pt}}&&\parbox{\wcH}{\vspace{3pt}\noindent
1.27273\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
p28 ing5. [source:refseq;acc:nm\_032329]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12124.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7562.05\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
4562.75\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/