Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 425 to 474 of 3228 in total
Value Type: Ranked
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1
\def\wcA{0.16666666666667\textwidth} \def\wcB{0.16666666666667\textwidth} \def\wcC{0.16666666666667\textwidth} \def\wcD{0.16666666666667\textwidth} \def\wcE{0.16666666666667\textwidth} \begin{longtable}{|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent 425\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent max protein. [source:swissprot;acc:p25912]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 227.828\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 210.561\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.082\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 426\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dynactin 4. [source:refseq;acc:nm\_032486]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 233.142\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 252.253\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.08197\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 427\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dna-directed rna polymerase ii 23 kda polypeptide (ec 2.7.7.6) (rpb25) (xap4) (rpb5) (rpabc1). [source:swissprot;acc:p19388]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 239.977\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 259.525\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.08146\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 428\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent atp-dependent rna helicase mgc2835; atp-dependent rna helicase; apoptosis related protein apr-5; dead box helicase 97 kda. [source:refseq;acc:nm\_024072]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 253.852\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 234.808\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0811\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 429\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent polymerase (rna) iii (dna directed) (32kd). [source:refseq;acc:nm\_006467]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 239.709\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 259.038\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.08064\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 430\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent u6 snrna-associated sm-like protein lsm5. [source:swissprot;acc:q9y4y9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 227.748\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 210.888\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07995\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 431\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent trub pseudouridine (psi) synthase homolog 1. [source:refseq;acc:nm\_139169]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 236.245\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 255.113\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07987\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 432\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent endonuclease g, mitochondrial precursor (ec 3.1.30.-) (endo g). [source:swissprot;acc:q14249]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 212.547\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 229.411\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07934\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 433\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent programmed cell death protein 8, mitochondrial precursor (ec 1.-.-.-) (apoptosis-inducing factor). [source:swissprot;acc:o95831]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 434\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent t-box transcription factor tbx6 (t-box protein 6). [source:swissprot;acc:o95947]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 435\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent polymerase (dna directed) iota; rad30 (s. cerevisiae) homolog b; polymerase (dna-directed), iota. [source:refseq;acc:nm\_007195]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 221.522\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 205.286\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07909\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 436\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent paxillin. [source:swissprot;acc:p49023]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 437\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent cdc42-interacting protein 4 (thyroid receptor interacting protein 10) (trip-10). [source:swissprot;acc:q15642]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 209.921\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 226.459\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07878\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 438\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent n-terminal acetyltransferase complex ard1 subunit homolog (ec 2.3.1.-). [source:swissprot;acc:p41227]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 233.723\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 216.674\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07869\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 439\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 40s ribosomal protein s9. [source:swissprot;acc:p46781]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 238.986\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 257.784\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07866\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 440\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent highly expressed in cancer, rich in leucine heptad repeats. [source:refseq;acc:nm\_006101]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 231.802\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 249.983\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07843\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 441\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent grb2-related adaptor protein. [source:swissprot;acc:q13588]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 223.457\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 207.222\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07835\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 442\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent e2a-pbx1-associated protein; putative 47 kda protein. [source:refseq;acc:nm\_020140]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 223.802\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 207.55\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.0783\vspace{3pt}}}\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 443\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent neuron navigator 2 isoform l; retinoic acid inducible in neuroblastoma; pore membrane and/or filament interacting like protein 2; helicase helad1. [source:refseq;acc:nm\_145117]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 223.79\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 207.539\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 444\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent neuron navigator 1; neuron navigator-1; pore membrane and/or filament interacting like protein 3. [source:refseq;acc:nm\_020443]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 223.801\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 207.549\vspace{3pt}}}&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 445\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent neuron navigator 3; pore membrane and/or filament interacting like protein 1; steerin 3. [source:refseq;acc:nm\_014903]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 446\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent growth factor receptor-bound protein 2 (grb2 adapter protein) (sh2/sh3 adapter grb2) (ash protein). [source:swissprot;acc:p29354]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 224.049\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 207.785\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07827\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 447\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent serine/threonine-protein kinase nek2 (ec 2.7.1.37) (nima-related protein kinase 2) (nima-like protein kinase 1) (hspk 21). [source:swissprot;acc:p51955]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 448\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent microtubule-actin crosslinking factor 1, isoform 4. [source:swissprot;acc:q96pk2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 228.468\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 246.338\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07822\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 449\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent bullous pemphigoid antigen 1 isoforms 1/2/3/4/5/8 (230 kda bullous pemphigoid antigen) (bpa) (hemidesmosomal plaque protein) (dystonia musculorum protein) (fragment). [source:swissprot;acc:q03001]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 228.463\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 246.33\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07821\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 450\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent signal recognition particle 9 kda protein (srp9). [source:swissprot;acc:p49458]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 235.94\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 218.837\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07815\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 451\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent polymerase (rna) iii (dna directed) (62kd). [source:refseq;acc:nm\_006468]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 239.092\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 257.705\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07785\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 452\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ba395l14.12 (novel protein similar to small nuclear ribonucleoprotein polypeptide a' (snrpa1)). [source:sptrembl;acc:q9nu36]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 224.161\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 207.972\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07784\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 453\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent u2 small nuclear ribonucleoprotein a' (u2 snrnp-a'). [source:swissprot;acc:p09661]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 454\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 40s ribosomal protein s26. [source:swissprot;acc:p02383]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 210.224\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 226.578\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07779\vspace{3pt}}}\\\cline{1-3} \parbox{\wcA}{\vspace{3pt}\noindent 455\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial import inner membrane translocase subunit tim22. [source:swissprot;acc:q9y584]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 210.225\vspace{3pt}}}&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 456\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent atp synthase mitochondrial f1 complex assembly factor 2. [source:refseq;acc:nm\_145691]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 457\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ubiquinol-cytochrome c reductase complex 14 kda protein (ec 1.10.2.2) (complex iii subunit vi) (qp-c). [source:swissprot;acc:p14927]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 458\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent signal recognition particle 9 kda protein (srp9). [source:swissprot;acc:p49458]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 235.922\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 218.925\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07764\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 459\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent bag-family molecular chaperone regulator-3 (bcl-2 binding athanogene- 3) (bag-3) (bcl-2-binding protein bis) (docking protein cair-1). [source:swissprot;acc:o95817]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 233.529\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 216.737\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07748\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 460\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent splicing factor 3a subunit 2 (spliceosome associated protein 62) (sap 62) (sf3a66). [source:swissprot;acc:q15428]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 223.648\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 207.62\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.0772\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 461\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent krueppel-like factor 5 (intestinal-enriched krueppel-like factor) (colon krueppel-like factor) (transcription factor bteb2) (basic transcription element binding protein 2) (bte-binding protein 2) (gc box binding protein 2). [source:swissprot;acc:q13887]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 462\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent mki67 (fha domain) interacting nucleolar phosphoprotein; nucleolar phosphoprotein nopp34; nucleolar protein interacting with the fha domain of pki-67. [source:refseq;acc:nm\_032390]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 254.434\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 236.224\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07709\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 463\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dna-directed rna polymerases iii 39 kda polypeptide (ec 2.7.7.6) (rna polymerase iii c39 subunit). [source:swissprot;acc:q9h1d9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 238.921\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 257.327\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07704\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 464\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ba138e2.1.2 (formin-binding protein 17 (fbp17), isoform 2). [source:sptrembl;acc:q96lh6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 210.578\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 226.764\vspace{3pt}}&\multirow{9}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07686\vspace{3pt}}}\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 465\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent neuronal acetylcholine receptor protein, alpha-7 chain precursor. [source:swissprot;acc:p36544]\vspace{3pt}}&\multirow{8}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 248.152\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 267.226\vspace{3pt}}}&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 466\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adenylate cyclase, type vi (ec 4.6.1.1) (atp pyrophosphate-lyase) (ca(2+)-inhibitable adenylyl cyclase). [source:swissprot;acc:o43306]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 467\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adenylate cyclase, type v (ec 4.6.1.1) (atp pyrophosphate-lyase) (adenylyl cyclase) (fragment). [source:swissprot;acc:o95622]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 468\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent leucine-rich repeat-containing protein 15 precursor (hlib). [source:swissprot;acc:q8tf66]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 469\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent fem-1 homolog b; fem-1-like death receptor binding protein; fem-1 (c.elegans) homolog b. [source:refseq;acc:nm\_015322]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 470\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent leucine-rich repeat protein lrrc3 precursor. [source:swissprot;acc:q9by71]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 471\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent laminin gamma-1 chain precursor (laminin b2 chain). [source:swissprot;acc:p11047]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 472\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent thymic stromal co-transporter. [source:refseq;acc:nm\_033051]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 473\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent pre-mrna processing factor 31 homolog; pre-mrna processing factor 31 homolog (yeast). [source:refseq;acc:nm\_015629]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 225.661\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 209.651\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07637\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 474\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent potassium voltage-gated channel subfamily a member 2 (potassium channel kv1.2) (rbk2) (hbk5) (ngk1) (mk2) (hukiv). [source:swissprot;acc:p16389]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 226.789\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 210.818\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07576\vspace{3pt}}\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/