Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 3958 to 4007 of 6456 in total 
Value Type: Ranked
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1979\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
tumor differentially expressed protein 1 (transmembrane protein sbbi99). [source:swissprot;acc:q13530]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
209.539\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
207.529\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00969\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1980\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
solute carrier family 27 member 3; fatty acid transport protein 3. [source:refseq;acc:nm\_024330]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
191.406\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
193.385\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.979\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tumor differentially expressed 1 protein like. [source:swissprot;acc:q9nrx5]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
209.539\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
207.529\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00969\vspace{3pt}}}\\\cline{1-2}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1981\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
d-3-phosphoglycerate dehydrogenase (ec 1.1.1.95) (3-pgdh). [source:swissprot;acc:o43175]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
disrupter of silencing 10. [source:refseq;acc:nm\_020368]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
191.411\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
193.39\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.979\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1982\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s28. [source:swissprot;acc:p25112]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
200.343\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
198.427\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00966\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
very long-chain acyl-coa synthetase homolog 1. [source:refseq;acc:nm\_014031]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
191.41\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
193.389\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.979\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1983\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
lim protein (similar to rat protein kinase c-binding enigma); enigma homolog. [source:refseq;acc:nm\_006457]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.25\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
217.175\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00955\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
solute carrier family 27 (fatty acid transporter), member 5; very long-chain acyl-coa synthetase homolog 2; very long-chain acyl-coa synthetase-related protein; likely ortholog of mouse solute carrier family 27 (fatty acid transporter), member 5. [source:refseq;acc:nm\_012254]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
191.408\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
193.387\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.979\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1984\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
e1a binding protein p400; p400 swi2/snf2-related protein; cagh32 protein; trinucleotide repeat containing 12. [source:refseq;acc:nm\_015409]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.26\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
217.193\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00952\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
similar to cg7020 gene product (fragment). [source:sptrembl;acc:q96ib4]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
191.415\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
193.394\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.979\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1985\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
lin-7 homolog c; lin-7 protein 3. [source:refseq;acc:nm\_018362]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
225.015\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
223.041\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.974\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial ribosomal protein l24. [source:refseq;acc:nm\_024540]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
219.26\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
217.193\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00952\vspace{3pt}}}\\\cline{1-2}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1986\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
65 kda yes-associated protein (yap65). [source:swissprot;acc:p46937]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
blood group rh(d) polypeptide (rhesus d antigen) (rhxiii) (rh polypeptide 2) (rhpii). [source:swissprot;acc:q02161]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
196.964\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
198.935\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.971\vspace{3pt}}}\\\cline{1-2}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1987\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
blood group rh(ce) polypeptide (rhesus c/e antigens) (rh30a) (rhixb) (rh polypeptide 1) (rhpi). [source:swissprot;acc:p18577]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
lin-7 homolog a; vertebrate lin7 homolog 1; tax interaction protein 33; mammalian lin-7 1. [source:refseq;acc:nm\_004664]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
225.022\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
222.9\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00952\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1988\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
9 kda protein. [source:swissprot;acc:p13994]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
219.26\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
217.193\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
blood group rh(ce) polypeptide (rhesus c/e antigens) (rh30a) (rhixb) (rh polypeptide 1) (rhpi). [source:swissprot;acc:p18577]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
196.965\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
198.936\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.971\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1989\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
collagen alpha 3(iv) chain precursor (goodpasture antigen). [source:swissprot;acc:q01955]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.261\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
217.195\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00951\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein phosphatase 1, regulatory (inhibitor) subunit 12b isoform a; myosin phosphatase regulatory subunit; myosin phosphatase, target subunit 2. [source:refseq;acc:nm\_002481]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.662\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215.693\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.969\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1990\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
collagen alpha 5(iv) chain precursor. [source:swissprot;acc:p29400]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.26\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
217.194\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00951\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein phosphatase 1, regulatory (inhibitor) subunit 12a; myosin phosphatase, target subunit 1. [source:refseq;acc:nm\_002480]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.676\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215.709\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.967\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1991\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna topoisomerase iii alpha (ec 5.99.1.2). [source:swissprot;acc:q13472]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
217.941\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215.979\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.962\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcriptional co-activator with pdz-binding motif (taz). [source:refseq;acc:nm\_015472]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.26\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
217.194\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00951\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1992\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
proteasome subunit beta type 10 precursor (ec 3.4.25.1) (proteasome mecl-1) (macropain subunit mecl-1) (multicatalytic endopeptidase complex subunit mecl-1). [source:swissprot;acc:p40306]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.201\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
214.245\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.956\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zasp protein (fragment). [source:sptrembl;acc:q9y4z3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.267\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
217.207\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00948\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1993\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
creatine kinase, sarcomeric mitochondrial precursor (ec 2.7.3.2) (s- mtck) (mib-ck) (basic-type mitochondrial creatine kinase). [source:swissprot;acc:p17540]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
198.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
196.347\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.953\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
huntingtin interacting protein 1 related (hip1-related) (hip 12). [source:swissprot;acc:o75146]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
189.052\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
190.835\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00943\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1994\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
creatine kinase, ubiquitous mitochondrial precursor (ec 2.7.3.2) (u- mtck) (mia-ck) (acidic-type mitochondrial creatine kinase). [source:swissprot;acc:p12532]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
198.293\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
196.341\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.952\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
goodpasture antigen-binding protein (ec 2.7.1.37) (gpbp) (collagen type iv alpha 3 binding protein) (star-related lipid transfer protein 11) (stard11) (start domain-containing protein 11). [source:swissprot;acc:q9y5p4]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
189.011\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
190.787\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0094\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1995\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
huntingtin interacting protein 1 (hip-i). [source:swissprot;acc:o00291]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
188.961\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
190.73\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00936\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
peptidyl prolyl isomerase h; cyclophilin h. [source:refseq;acc:nm\_006347]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
198.258\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
196.319\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.939\vspace{3pt}}}\\\cline{1-2}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1996\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
prp18 pre-mrna processing factor 18 homolog. [source:refseq;acc:nm\_003675]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sodium/iodide cotransporter (na(+)/i(-) cotransporter) (sodium-iodide symporter) (na+/i-symporter). [source:swissprot;acc:q92911]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
204.682\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
202.784\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00936\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1997\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
j domain protein c21orf55. [source:swissprot;acc:q9nx36]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
198.257\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
196.319\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.938\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
kidney and liver proline oxidase 1. [source:refseq;acc:nm\_021232]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
204.651\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
202.759\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00933\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1998\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
creatine kinase, b chain (ec 2.7.3.2) (b-ck). [source:swissprot;acc:p12277]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
198.19\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
196.252\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.938\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ribosomal protein l24-like; 60s ribosomal protein l30 isolog; my024 protein; homolog of yeast ribosomal like protein 24. [source:refseq;acc:nm\_016304]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
200.219\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
198.37\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00932\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1999\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
acyl-coa dehydrogenase, short/branched chain specific, mitochondrial precursor (ec 1.3.99.-) (sbcad) (2-methyl branched chain acyl-coa dehydrogenase) (2-mebcad) (2-methylbutyryl-coenzyme a dehydrogenase) (2-methylbutyryl-coa dehydrogenase). [source:swissprot;acc:p45954]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.799\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.865\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.934\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
solute carrier family 5 (iodide transporter), member 8; apical iodide transporter. [source:refseq;acc:nm\_145913]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
204.636\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
202.748\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00931\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2000\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s28. [source:swissprot;acc:p25112]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
200.343\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
198.427\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.916\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sodium-dependent multivitamin transporter (na(+)-dependent multivitamin transporter). [source:swissprot;acc:q9y289]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
204.626\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
202.739\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00931\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2001\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
creatine kinase, m chain (ec 2.7.3.2) (m-ck). [source:swissprot;acc:p06732]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
198.258\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
196.346\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.912\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
lin-7 homolog b; lin-7b protein; likely ortholog of mouse lin-7b; mammalian lin-7 protein 2; likely orholog of mouse lin 7 homolog b (c. elegans). [source:refseq;acc:nm\_022165]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
225.02\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
222.948\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00929\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2002\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
axonemal dynein light intermediate polypeptide 1 (inner dynein arm light chain, axonemal) (hp28). [source:swissprot;acc:o14645]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
208.315\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
206.41\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.905\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
u2 small nuclear ribonucleoprotein b". [source:swissprot;acc:p08579]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
214.775\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.769\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00928\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2003\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
axonemal dynein light intermediate polypeptide 1 (inner dynein arm light chain, axonemal) (hp28). [source:swissprot;acc:o14645]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
208.315\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
206.41\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00923\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
traf and tnf receptor-associated protein; ets1-associated protein 2. [source:refseq;acc:nm\_016614]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.466\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.562\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.904\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\parbox{\wcA}{\vspace{3pt}\noindent
2004\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
proliferating cell nuclear antigen (pcna) (cyclin). [source:swissprot;acc:p12004]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
229.102\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
231.001\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.899\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/