Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 341 to 390 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
86\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma-associated antigen 11 (mage-11 antigen). [source:swissprot;acc:p43364]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.24949\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein fosb (g0/g1 switch regulatory protein 3). [source:swissprot;acc:p53539]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4942.49\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7037.32\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.42384\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 65 kda regulatory subunit a, alpha isoform (pp2a, subunit a, pr65-alpha isoform) (pp2a, subunit a, r1-alpha isoform) (medium tumor antigen-associated 61 kda protein). [source:swissprot;acc:p30153]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
63.6205\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
48.8838\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.30146\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transforming protein p21a (k-ras 2a) (ki-ras) (c-k-ras). [source:swissprot;acc:p01116]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
105500\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64146.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.64468\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
87\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
amyloid beta a4 precursor protein-binding family a member 1 (neuron- specific x11 protein) (neuronal munc18-1-interacting protein 1) (mint-1) (adapter protein x11alpha). [source:swissprot;acc:q02410]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
42.2825\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
54.9687\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.30003\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
fos-related antigen 1 (fra-1). [source:swissprot;acc:p15407]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4944.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7038.04\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.42347\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
leucine-rich repeat protein shoc-2 (ras-binding protein sur-8). [source:swissprot;acc:q9uq13]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
105482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64136.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.64464\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma-associated antigen 2 (mage-2 antigen). [source:swissprot;acc:p43356]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
88.2482\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
110.265\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.24949\vspace{3pt}}}\\\cline{1-2}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
88\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
hepatocellular carcinoma-associated protein hca1. [source:refseq;acc:nm\_020932]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
potassium voltage-gated channel, shal-related subfamily, member 2; voltage-sensitive potassium channel; voltage-gated potassium channel kv4.2. [source:refseq;acc:nm\_012281]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
2411.93\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1695.45\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.42259\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
presenilin 2 (ps-2) (stm-2) (e5-1) (ad3lp) (ad5). [source:swissprot;acc:p49810]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
37.3005\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
48.4141\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.29795\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ral guanine nucleotide dissociation stimulator-like 2 (ralgds-like factor) (ras-associated protein rab2l). [source:swissprot;acc:o15211]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
105482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64137.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.64463\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
89\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cystathionine gamma-lyase (ec 4.4.1.1) (gamma-cystathionase). [source:swissprot;acc:p32929]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
2414.22\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1698.12\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.4217\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma-associated antigen 6 (mage-6 antigen) (mage3b). [source:swissprot;acc:p43360]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.24949\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
s-phase kinase-associated protein 1a (cyclin a/cdk2-associated protein p19) (p19a) (p19skp1) (rna polymerase ii elongation factor-like protein) (organ of corti protein 2) (ocp-ii protein) (ocp-2) (transcription elongation factor b) (siii). [source:swissprot;acc:p34991]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
37.3005\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
48.4141\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.29795\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transforming protein p21/h-ras-1 (c-h-ras). [source:swissprot;acc:p01112]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
105473\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64132.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.64462\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
90\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
f-box protein fbw7 isoform 2; archipelago, drosophila, homolog of; f-box protein fbw7; f-box protein sel-10; homolog of c elegans sel-10. [source:refseq;acc:nm\_018315]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
37.3005\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
48.4141\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.29795\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
necdin. [source:swissprot;acc:q99608]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.24949\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
potassium voltage-gated channel, shal-related subfamily, member 3 isoform 1; sha1-related potassium channel kv4.3; voltage-gated k+ channel; potassium ionic channel kv4.3; voltage-gated potassium channel kv4.3. [source:refseq;acc:nm\_004980]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
2414.77\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1698.75\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.4215\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transforming protein n-ras. [source:swissprot;acc:p01111]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
105469\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64130.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.64461\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
91\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cullin homolog 2 (cul-2). [source:swissprot;acc:q13617]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
37.3005\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
48.4141\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.29795\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma-associated antigen d1 (mage-d1 antigen) (neurotrophin receptor-interacting mage homolog) (pro2292). [source:swissprot;acc:q9y5v3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.24949\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
potassium voltage-gated channel, shal-related subfamily, member 1; shal-type potassium channel; voltage-gated potassium channel kv4.1. [source:refseq;acc:nm\_004979]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
2416.53\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1700.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.42082\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ral guanine nucleotide dissociation stimulator (ralgef) (ralgds). [source:swissprot;acc:q12967]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
90432.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56304.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.60615\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
92\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dj820b18.1 (similar to nuclear cap binding protein) (fragment). [source:sptrembl;acc:q8wwk2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4117.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5801.04\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.40882\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma-associated antigen f1 (mage-f1 antigen). [source:swissprot;acc:q9hay2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.24949\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
metalloprotease 1; metalloprotease 1 (pitrilysin family). [source:refseq;acc:nm\_014889]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
29570.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
18601.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.58967\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
presenilin 1 (ps-1) (s182 protein). [source:swissprot;acc:p49768]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
37.3005\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
48.4141\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.29795\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
93\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
beta-1,4 mannosyltransferase. [source:refseq;acc:nm\_019109]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
29567\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
18601.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.58949\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cullin homolog 1 (cul-1). [source:swissprot;acc:q13616]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
37.3005\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
48.4141\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.29795\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
formin binding protein 3; fas-ligand associated factor 1; huntingtin-interacting protein a; ny-ren-6 antigen. [source:refseq;acc:nm\_017892]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4245.52\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5942.75\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.39977\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma antigen, family b, 6. [source:refseq;acc:nm\_173523]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.24949\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
94\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
chromosome 3p21.1 gene sequence. [source:refseq;acc:nm\_013286]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
47.6504\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36.9304\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.29028\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
huntingtin-interacting protein hypa/fbp11 (fragment). [source:sptrembl;acc:o75404]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4247.86\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5941.88\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.39879\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma-associated antigen 4 (mage-4 antigen) (mage-x2) (mage-41). [source:swissprot;acc:p43358]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.24949\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ral guanine nucleotide dissociation stimulator-like 1 (ralgds-like 1). [source:swissprot;acc:q9nzl6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
84857.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
53402.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.58903\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
95\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma-associated antigen 9 (mage-9 antigen). [source:swissprot;acc:p43362]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.24949\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein phosphatase 1, regulatory subunit 7; sds22. [source:refseq;acc:nm\_002712]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
256169\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
162517\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.57626\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
regulator of g-protein signaling 19 (rgs19) (g-alpha interacting protein) (gaip protein). [source:swissprot;acc:p49795]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
47.6504\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36.9304\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.29028\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
son protein (son3) (negative regulatory element-binding protein) (nre- binding protein) (dbp-5) (bax antagonist selected in saccharomyces 1) (bass1) (protein c21orf50). [source:swissprot;acc:p18583]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
2397.19\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
3343.62\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.39481\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
96\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
atlastin; guanylate-binding protein 3. [source:refseq;acc:nm\_015915]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7744.68\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4959.41\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.56161\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
lag1 longevity assurance homolog 2 isoform 1; l3 pigment; tumor metastasis-suppressor. [source:refseq;acc:nm\_022075]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4110.14\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5694.99\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.3856\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma-associated antigen 8 (mage-8 antigen). [source:swissprot;acc:p43361]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.24949\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
putative rna-binding protein 15 (rna binding motif protein 15) (one-twenty two protein). [source:swissprot;acc:q96t37]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
47.6504\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36.9304\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.29028\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
97\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
amyloid beta a4 precursor protein-binding family a member 1 (neuron- specific x11 protein) (neuronal munc18-1-interacting protein 1) (mint-1) (adapter protein x11alpha). [source:swissprot;acc:q02410]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
2820.51\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
3897.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.3817\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cleavage and polyadenylation specific factor 4, 30kd subunit; cleavage-polyadenylation specificity factor, 30kd; no arches-like (zebrafish) zinc finger protein; cleavage-polyadenylation specificity factor. [source:refseq;acc:nm\_006693]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227160\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
146079\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.55505\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma-associated antigen c1 (mage-c1 antigen) (cancer-testis antigen ct7). [source:swissprot;acc:o60732]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.24949\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
regulator of g-protein signaling 20 (rgs20) (regulator of gz- selective protein signaling 1) (gz-selective gtpase-activating protein) (g(z)gap). [source:swissprot;acc:o76081]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
47.6504\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36.9304\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.29028\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
98\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma-associated antigen 12 (mage-12 antigen) (mage12f). [source:swissprot;acc:p43365]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
88.2482\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
110.265\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.24949\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
presenilin 2 (ps-2) (stm-2) (e5-1) (ad3lp) (ad5). [source:swissprot;acc:p49810]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
2353.63\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
3225.65\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.3705\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/