Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene Hugo description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 343 to 392 of 3228 in total 
Value Type: Ranked
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

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\def\wcB{0.14285714285714\textwidth}
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\def\wcE{0.14285714285714\textwidth}
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\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
343\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PRMT3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein arginine n-methyltransferase 3 (ec 2.1.1.-) (fragment). [source:swissprot;acc:o60678]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
241.625\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
265.136\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.0973\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
344\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
40s ribosomal protein s2 (s4) (llrep3 protein). [source:swissprot;acc:p15880]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
345\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CMPK\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ump-cmp kinase (ec 2.7.4.14) (cytidylate kinase) (deoxycytidylate kinase) (cytidine monophosphate kinase). [source:swissprot;acc:p30085]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
242.14\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
265.697\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.09729\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
346\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RPS3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
40s ribosomal protein s3. [source:swissprot;acc:p23396]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
241.612\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
265.119\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
347\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
AK3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gtp:amp phosphotransferase mitochondrial (ec 2.7.4.10) (ak3) (adenylate kinase 3 alpha like 1). [source:swissprot;acc:q9uij7]\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
242.14\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
265.697\vspace{3pt}}&\\\cline{1-3}\cline{5-6}
\parbox{\wcA}{\vspace{3pt}\noindent
348\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adenylate kinase isoenzyme 4, mitochondrial (ec 2.7.4.3) (atp-amp transphosphorylase). [source:swissprot;acc:p27144]\vspace{3pt}}&&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
265.696\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.09728\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
349\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MED22\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
surfeit locus protein 5. [source:swissprot;acc:q15528]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
350\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SCAPER\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
zinc finger protein 291. [source:swissprot;acc:q9by12]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
351\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PEX1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
peroxisome biogenesis factor 1 (peroxin-1) (peroxisome biogenesis disorder protein 1). [source:swissprot;acc:o43933]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
352\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TXNDC9\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein 1-4 (atp binding protein associated with cell differentiation). [source:swissprot;acc:o14530]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
353\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GIPC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rgs19-interacting protein 1 (gaip c-terminus interacting protein gipc) (rgs-gaip interacting protein) (tax interaction protein 2) (tip-2). [source:swissprot;acc:o14908]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
231.73\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
211.252\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.09694\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
354\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
STX10\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
syntaxin 10 (syn10). [source:swissprot;acc:o60499]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
234.691\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
257.442\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
355\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
STX6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
syntaxin 6. [source:swissprot;acc:o43752]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
234.673\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
257.414\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09691\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
356\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l10a (csa-19). [source:swissprot;acc:p53025]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
243.24\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
266.796\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09684\vspace{3pt}}\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
357\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l10 (qm protein) (tumor suppressor qm) (laminin receptor homolog). [source:swissprot;acc:p27635]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
243.12\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
266.661\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.09683\vspace{3pt}}}\\\cline{1-3}\cline{5-5}
\parbox{\wcA}{\vspace{3pt}\noindent
358\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RPL10L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ribosomal protein l10-like protein. [source:refseq;acc:nm\_080746]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
266.662\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
359\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RPL4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l4 (l1). [source:swissprot;acc:p36578]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
239.277\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
262.434\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09678\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
360\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SEC61G\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein transport protein sec61 gamma subunit. [source:swissprot;acc:p38384]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
243.072\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
266.559\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09663\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
361\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MRPL17\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mitochondrial ribosomal protein l17; lyst-interacting protein lip2. [source:refseq;acc:nm\_022061]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
242.83\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
266.248\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09644\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
362\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SHROOM2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
apical-like protein (apxl protein). [source:swissprot;acc:q13796]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
231.492\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
211.136\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09641\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
363\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SHROOM3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
shroom-related protein; f-actin-binding protein; likely ortholog of mouse shroom. [source:refseq;acc:nm\_020859]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
231.481\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
211.131\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09639\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
364\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
POLR2B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 140 kda polypeptide (ec 2.7.7.6) (rna polymerase ii subunit 2) (rpb2). [source:swissprot;acc:p30876]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
243.208\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
266.617\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09625\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
365\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MRPL36\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l36, mitochondrial precursor (l36mt) (brca1- interacting protein 1). [source:swissprot;acc:q9p0j6]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
242.744\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
266.07\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09609\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
366\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RPS5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
40s ribosomal protein s5. [source:swissprot;acc:p46782]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
242.473\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
265.756\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09602\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
367\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HNRPM\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
heterogeneous nuclear ribonucleoprotein m (hnrnp m). [source:swissprot;acc:p52272]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
234.146\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
256.627\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09601\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
368\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PUS1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
trna pseudouridine synthase a (ec 4.2.1.70) (pseudouridylate synthase i) (pseudouridine synthase i) (uracil hydrolyase). [source:swissprot;acc:q9y606]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
242.66\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
265.715\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09501\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
369\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MRPL12\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l12, mitochondrial precursor (l12mt) (5c5-2). [source:swissprot;acc:p52815]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
242.159\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
265.104\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.09475\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
370\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NUDT12\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nudix (nucleoside diphosphate linked moiety x)-type motif 12. [source:refseq;acc:nm\_031438]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
371\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RPS6KC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ribosomal protein s6 kinase, 52kda, polypeptide 1; ribosomal protein s6 kinase, 52kd, polypeptide 1. [source:refseq;acc:nm\_012424]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
186.52\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
170.42\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.09447\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
372\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ribosomal protein s6 kinase-like 1. [source:refseq;acc:nm\_031464]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
373\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MRPL11\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l11, mitochondrial precursor (l11mt) (cgi-113). [source:swissprot;acc:q9y3b7]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
242.37\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
265.255\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09442\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
374\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TFDP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription factor dp-2 (e2f dimerization partner 2). [source:swissprot;acc:q14188]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
267.208\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
244.168\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09436\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
375\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
POLR3A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dna-directed rna polymerase iii largest subunit (ec 2.7.7.6) (rpc155) (rpc1). [source:swissprot;acc:o14802]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
242.686\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
265.516\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09407\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
376\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DDX56\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
probable atp-dependent 61 kda nucleolar rna helicase (dead-box protein 21). [source:swissprot;acc:q9ny93]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
257.017\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.945\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09395\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
377\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
POLR1A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dna-directed rna polymerase i largest subunit (ec 2.7.7.6) (rna polymerase i 194 kda subunit) (rpa194). [source:swissprot;acc:o95602]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
242.691\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
265.481\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09391\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
378\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RPL30\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l30. [source:swissprot;acc:p04645]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
242.593\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
265.365\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09387\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
379\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
AK2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adenylate kinase isoenzyme 2, mitochondrial (ec 2.7.4.3) (atp-amp transphosphorylase). [source:swissprot;acc:p54819]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
241.509\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
264.163\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0938\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
380\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
suppressor of ty 5 homolog; suppressor of ty (s.cerevisiae) 5 homolog. [source:refseq;acc:nm\_003169]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
242.109\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
264.79\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09368\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
381\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TAF7\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription initiation factor tfiid 55 kda subunit (tafii-55) (tafii55). [source:swissprot;acc:q15545]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
200.586\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
183.423\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09357\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
382\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TAF7L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tata box binding protein-associated factor, rna polymerase ii, q; taf7-like rna polymerase ii, tata box binding protein (tbp)-associated factor, 50 kd; tbp-associated factor, rna polymerase ii, q. [source:refseq;acc:nm\_024885]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
200.791\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
183.66\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09328\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
383\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RBM39\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
rna-binding region containing protein 2 (hepatocellular carcinoma protein 1) (splicing factor hcc1). [source:swissprot;acc:q14498]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
237.862\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
217.739\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09242\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
384\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
E2F1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription factor e2f1 (e2f-1) (retinoblastoma binding protein 3) (rbbp-3) (prb-binding protein e2f-1) (pbr3) (retinoblastoma-associated protein 1) (rbap-1). [source:swissprot;acc:q01094]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
266.421\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
244.236\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.09083\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
385\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
E2F2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription factor e2f2 (e2f-2). [source:swissprot;acc:q14209]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
386\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RPS14\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
40s ribosomal protein s14 (pro2640). [source:swissprot;acc:p06366]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
242.238\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
264.11\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.09029\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
387\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
40s ribosomal protein s18 (ke-3) (ke3). [source:swissprot;acc:p25232]\vspace{3pt}}&&&\\\cline{1-1}\cline{3-6}
\parbox{\wcA}{\vspace{3pt}\noindent
388\vspace{3pt}}&&\parbox{\wcC}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein e (snrnp-e) (sm protein e) (sm-e) (sme). [source:swissprot;acc:p08578]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
227.575\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
208.756\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.09015\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
389\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SNRPF\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein f (snrnp-f) (sm protein f) (sm-f) (smf). [source:swissprot;acc:q15356]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
390\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MRPL13\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l13, mitochondrial (l13mt). [source:swissprot;acc:q9byd1]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
241.828\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
263.62\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.09011\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
391\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RPS16\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
40s ribosomal protein s16. [source:swissprot;acc:p17008]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
392\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RPL13A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l13a (23 kda highly basic protein). [source:swissprot;acc:p40429]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
241.83\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
263.615\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09008\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/