Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2058 to 2107 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{3}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
515\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
pescadillo homolog 1. [source:swissprot;acc:o00541]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
251.297\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.941\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06962\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor dp-1 (e2f dimerization partner 1) (drtf1- polypeptide-1) (drtf1). [source:swissprot;acc:q14186]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3890.53\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4439.07\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14099\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
u6 snrna-associated sm-like protein lsm1 (small nuclear ribonuclear casm) (cancer-associated sm-like). [source:swissprot;acc:o15116]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
56.3551\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
61.4322\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09009\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
516\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
adenylate kinase isoenzyme 2, mitochondrial (ec 2.7.4.3) (atp-amp transphosphorylase). [source:swissprot;acc:p54819]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
50.7935\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
46.6042\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08989\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
n-acetylgalactosamine kinase (ec 2.7.1.-) (galnac kinase) (galactokinase 2). [source:swissprot;acc:q01415]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4910.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5600.61\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14051\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transforming protein rhoa (h12). [source:swissprot;acc:p06749]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
19987.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23960.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19878\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
u6 snrna-associated sm-like protein lsm8. [source:swissprot;acc:o95777]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
228.255\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.422\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0695\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
517\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 3 subunit 2 (eif-3 beta) (eif3 p36) (eif3i) (tgf-beta receptor interacting protein 1) (trip-1). [source:swissprot;acc:q13347]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.0578\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
54.5502\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08974\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
galactose-1-phosphate uridylyltransferase (ec 2.7.7.12) (gal-1-p uridylyltransferase) (udp-glucose--hexose-1-phosphate uridylyltransferase). [source:swissprot;acc:p07902]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4910.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5600.61\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14051\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
metaxin 2. [source:swissprot;acc:o75431]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.537\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.793\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06949\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
splicing factor 3b subunit 3 (spliceosome associated protein 130) (sap 130) (sf3b130) (pre-mrna splicing factor sf3b 130 kda subunit). [source:swissprot;acc:q15393]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
19263.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23092.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19877\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
518\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
nucleostemin; putative nucleotide binding protein, estradiol-induced. [source:refseq;acc:nm\_014366]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
250.858\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.563\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06947\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
proline synthetase co-transcribed bacterial homolog protein. [source:swissprot;acc:o94903]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
11447.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
13719.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19847\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
trinucleotide repeat containing 15. [source:refseq;acc:nm\_015575]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.0578\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
54.5502\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08974\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
udp-glucose 4-epimerase (ec 5.1.3.2) (galactowaldenase) (udp- galactose 4-epimerase). [source:swissprot;acc:q14376]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
4910.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5600.61\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14051\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
519\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
glycogen [starch] synthase, muscle (ec 2.4.1.11). [source:swissprot;acc:p13807]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
9648.27\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10994.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13957\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
polymerase (dna directed) iota; rad30 (s. cerevisiae) homolog b; polymerase (dna-directed), iota. [source:refseq;acc:nm\_007195]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
22387.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26827.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19834\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
segment polarity protein dishevelled homolog dvl-3 (dishevelled-3) (dsh homolog 3). [source:swissprot;acc:q92997]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.702\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
204.582\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06902\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
septin-like protein kiaa0202 (fragment). [source:swissprot;acc:q92599]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
114.309\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
124.527\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08939\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
520\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
breast carcinoma amplified sequence 2; spliceosome associated protein, amplified in breast cancer. [source:refseq;acc:nm\_005872]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
61.1902\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
66.6503\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08923\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
endo-beta-n-acetylglucosaminidase. [source:refseq;acc:nm\_022759]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9642.22\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10986.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13941\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
paxillin. [source:swissprot;acc:p49023]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
22387.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26827.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19834\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sqv-7-like protein (fragment). [source:sptrembl;acc:o95454]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
214.754\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
229.565\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06897\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
521\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
carboxypeptidase a5. [source:refseq;acc:nm\_080385]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
53174\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
44377.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19822\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cdc5-like; cdc5 (cell division cycle 5, s. pombe, homolog)-like; cell division cycle 5, s. pombe, homolog-like; cdc5-related protein. [source:refseq;acc:nm\_001253]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
61.1902\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
66.6503\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08923\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
exosome complex exonuclease rrp41 (ec 3.1.13.-) (ribosomal rna processing protein 41) (p12a). [source:swissprot;acc:q9npd3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.237\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
230.07\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06891\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
u4/u6-associated rna splicing factor. [source:refseq;acc:nm\_004698]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5390.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6142.07\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13937\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
522\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
carboxypeptidase b precursor (ec 3.4.17.2) (pancreas-specific protein) (pasp). [source:swissprot;acc:p15086]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
53174\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
44377.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19822\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glycogen [starch] synthase, liver (ec 2.4.1.11). [source:swissprot;acc:p54840]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9634.98\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10976.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1392\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
pleiotropic regulator 1 (prl1homolog, arabidopsis); pleiotropic regulator 1 (prl1, arabidopsis homolog). [source:refseq;acc:nm\_002669]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.893\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
208.523\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06891\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
septin 10 isoform 1. [source:refseq;acc:nm\_144710]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
113.733\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
123.871\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08914\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
523\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
aquaporin 4 (wch4) (mercurial-insensitive water channel) (miwc). [source:swissprot;acc:p55087]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10640.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12117.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13887\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
exosome complex exonuclease rrp4 (ec 3.1.13.-) (ribosomal rna processing protein 4). [source:swissprot;acc:q13868]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.237\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
230.07\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06891\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
neutral and basic amino acid transport protein rbat (b(0,+)-type amino acid transport protein) (nbat) (d2h). [source:swissprot;acc:q07837]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
53174\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
44377.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19822\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ribonucleoside-diphosphate reductase m1 chain (ec 1.17.4.1) (ribonucleotide reductase large chain). [source:swissprot;acc:p23921]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
66.377\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
72.2842\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08899\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
524\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
aminoacylase-1 (ec 3.5.1.14) (n-acyl-l-amino-acid amidohydrolase) (acy-1). [source:swissprot;acc:q03154]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
53174\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
44377.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19822\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
aquaporin 5. [source:swissprot;acc:p55064]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10640\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12117.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13887\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
brain protein 44. [source:swissprot;acc:o95563]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
113.374\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
123.463\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08899\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
exosome complex exonuclease rrp40 (ec 3.1.13.-) (ribosomal rna processing protein 40) (p10) (cgi-102). [source:swissprot;acc:q9nqt5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.237\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
230.07\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06891\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
525\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
carboxypeptidase a1 precursor (ec 3.4.17.1). [source:swissprot;acc:p15085]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
53174\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
44377.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.19822\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
exosome complex exonuclease rrp46 (ec 3.1.13.-) (ribosomal rna processing protein 46) (p12b) (chronic myelogenous leukemia tumor antigen 28). [source:swissprot;acc:q9nqt4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.237\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
230.07\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06891\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
lens fiber major intrinsic protein (mip26) (mp26) (aquaporin 0). [source:swissprot;acc:p30301]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10639.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12117.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13887\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
septin 7 (cdc10 protein homolog). [source:swissprot;acc:q16181]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
113.374\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
123.463\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08899\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
526\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
aquaporin-cd (aqp-cd) (water channel protein for renal collecting duct) (adh water channel) (aquaporin 2) (collecting duct water channel protein) (wch-cd). [source:swissprot;acc:p41181]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10639.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12117.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13886\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
electron transfer flavoprotein beta-subunit (beta-etf). [source:swissprot;acc:p38117]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
31189.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
37352.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1976\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nnp-1 protein (novel nuclear protein 1) (nucleolar protein nop52) (nop52) (d21s2056e). [source:swissprot;acc:p56182]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
250.538\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.401\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06884\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
septin 6. [source:swissprot;acc:q14141]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
113.169\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
123.23\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0889\vspace{3pt}}\\\hline
\multirow{3}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
527\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dead (asp-glu-ala-asp) box polypeptide 31 isoform 1; dead/dexh helicase ddx31. [source:refseq;acc:nm\_022779]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
248.56\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
232.579\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06871\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
deoxyribonuclease ii beta isoform 1 precursor; deoxyribonuclease ii beta; endonuclease dlad. [source:refseq;acc:nm\_021233]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
153.191\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
166.771\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08865\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein phosphatase 2c beta isoform (ec 3.1.3.16) (pp2c-beta). [source:swissprot;acc:o75688]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4775.11\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5438.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13886\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/