Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2618 to 2667 of 6456 in total 
Value Type: Ranked
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1309\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
prefoldin subunit 3 (von hippel-lindau binding protein 1) (vhl binding protein-1) (vbp-1) (hibbj46). [source:swissprot;acc:q15765]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
226.439\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
221.26\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02341\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1310\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
phd finger protein 9. [source:refseq;acc:nm\_018062]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.772\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
221.594\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4.822\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
prefoldin subunit 2 (hspc231). [source:swissprot;acc:q9uhv9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
226.439\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
221.26\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02341\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1311\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
small optic lobes homolog; small optic lobes, drosophila, homolog of. [source:refseq;acc:nm\_005632]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.772\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
221.594\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4.822\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
uxt protein (ubiquitously expressed transcript protein) (hspc024). [source:swissprot;acc:q9ubk9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
226.439\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
221.26\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02341\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1312\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
n-acetylgalactosamine kinase (ec 2.7.1.-) (galnac kinase) (galactokinase 2). [source:swissprot;acc:q01415]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.162\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
210.412\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4.75\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
rad50 homolog isoform 1. [source:refseq;acc:nm\_005732]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
199.739\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
204.407\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02337\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1313\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
galactose-1-phosphate uridylyltransferase (ec 2.7.7.12) (gal-1-p uridylyltransferase) (udp-glucose--hexose-1-phosphate uridylyltransferase). [source:swissprot;acc:p07902]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.162\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
210.412\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4.75\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
signal transducer and activator of transcription 3 (acute-phase response factor). [source:swissprot;acc:p40763]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
222.573\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
227.75\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.02326\vspace{3pt}}}\\\cline{1-2}\cline{5-5}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1314\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
signal transducer and activator of transcription 4. [source:swissprot;acc:q14765]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
227.751\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
udp-glucose 4-epimerase (ec 5.1.3.2) (galactowaldenase) (udp- galactose 4-epimerase). [source:swissprot;acc:q14376]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.162\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
210.412\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4.75\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1315\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
signal transducer and activator of transcription 1-alpha/beta (transcription factor isgf-3 components p91/p84). [source:swissprot;acc:p42224]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.574\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
227.752\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02326\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein zic 1 (zinc finger protein of the cerebellum 1). [source:swissprot;acc:q15915]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.569\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.832\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4.737\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1316\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
signal transducer and activator of transcription 6 (il-4 stat). [source:swissprot;acc:p42226]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.569\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
227.739\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02323\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein zic 3 (zinc finger protein of the cerebellum 3). [source:swissprot;acc:o60481]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.572\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.841\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4.731\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1317\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
centromere protein j; centrosomal p4.1-associated protein; lyst-interacting protein lip1; lag-3-associated protein. [source:refseq;acc:nm\_018451]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
206.773\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
202.105\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0231\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein zic 2 (zinc finger protein of the cerebellum 2). [source:swissprot;acc:o95409]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.574\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.847\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4.727\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1318\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
camp response element-binding protein cre-bpa. [source:refseq;acc:nm\_004904]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
218.591\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.899\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4.692\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
signal transducer and activator of transcription 5a. [source:swissprot;acc:p42229]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.546\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
227.673\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02304\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1319\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
centromere protein j; centrosomal p4.1-associated protein; lyst-interacting protein lip1; lag-3-associated protein. [source:refseq;acc:nm\_018451]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
206.773\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
202.105\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4.668\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glycogen [starch] synthase, muscle (ec 2.4.1.11). [source:swissprot;acc:p13807]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
159.75\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
156.153\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02304\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1320\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
rad50 homolog isoform 1. [source:refseq;acc:nm\_005732]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
199.739\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
204.407\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4.668\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
signal transducer and activator of transcription 5b. [source:swissprot;acc:p51692]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.544\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
227.667\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02302\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1321\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
m-phase inducer phosphatase 3 (ec 3.1.3.48) (dual specificity phosphatase cdc25c). [source:swissprot;acc:p30307]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
259.439\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
254.797\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4.642\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
probable dimethyladenosine transferase (ec 2.1.1.-) (s- adenosylmethionine-6-n',n'-adenosyl(rrna) dimethyltransferase) (18s rrna dimethylase). [source:swissprot;acc:q9unq2]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
226.347\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
221.259\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.023\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1322\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
endo-beta-n-acetylglucosaminidase. [source:refseq;acc:nm\_022759]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
159.86\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
156.275\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02294\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
suppressor of cytokine signaling 1 (socs-1) (jak-binding protein) (jab) (stat induced stat inhibitor 1) (ssi-1) (tec-interacting protein 3) (tip-3). [source:swissprot;acc:o15524]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.542\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
211.908\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4.634\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1323\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytoplasmic protein nck2 (nck adaptor protein 2) (sh2/sh3 adaptor protein nck-beta) (nck-2). [source:swissprot;acc:o43639]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
205.225\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
200.625\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02293\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glia maturation factor gamma (gmf-gamma). [source:swissprot;acc:o60234]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
216.542\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
211.908\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
4.634\vspace{3pt}}}\\\cline{1-2}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1324\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
asc-1 complex subunit p100. [source:refseq;acc:nm\_032204]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glycogen [starch] synthase, liver (ec 2.4.1.11). [source:swissprot;acc:p54840]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
159.993\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
156.421\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02284\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1325\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
fk506-binding protein 1a (ec 5.2.1.8) (peptidyl-prolyl cis-trans isomerase) (ppiase) (rotamase) (12 kda fkbp) (fkbp-12) (immunophilin fkbp12). [source:swissprot;acc:p20071]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.542\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
211.908\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4.634\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
werner helicase interacting protein isoform 1; putative helicase ruvbl; werner helicase interacting protein. [source:refseq;acc:nm\_020135]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.133\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212.289\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02282\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1326\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dj947l8.1.6 (novel cub and sushi (scr repeat) domain protein) (fragment). [source:sptrembl;acc:q9h4w2]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
218.509\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.648\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02275\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
upstream stimulatory factor 1 (major late transcription factor 1). [source:swissprot;acc:p22415]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
214.987\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
210.359\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4.628\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1327\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
eyes absent homolog 3. [source:swissprot;acc:q99504]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
218.537\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.91\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4.627\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein zic 4 (zinc finger protein of the cerebellum 4) (fragment). [source:swissprot;acc:q8n9l1]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
218.509\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.648\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.02275\vspace{3pt}}}\\\cline{1-2}\cline{5-5}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1328\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
calcipressin 2 (thyroid hormone-responsive protein zaki-4) (down syndrome candidate region 1-like 1) (myocyte-enriched calcineurin interacting protein 2) (mcip2). [source:swissprot;acc:q14206]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
213.649\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
upstream stimulatory factor 2 (upstream transcription factor 2) (fos-interacting protein) (fip) (major late transcription factor 2). [source:swissprot;acc:q15853]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
214.971\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
210.354\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4.617\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1329\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytoplasmic protein nck2 (nck adaptor protein 2) (sh2/sh3 adaptor protein nck-beta) (nck-2). [source:swissprot;acc:o43639]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
205.225\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
200.625\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4.6\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dj947l8.1.1 (novel cub and sushi (scr repeat) domain protein) (fragment). [source:sptrembl;acc:q9h4v7]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.509\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
213.648\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.02275\vspace{3pt}}}\\\cline{1-2}\cline{4-4}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1330\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
calcipressin 1 (down syndrome critical region protein 1) (myocyte- enriched calcineurin interacting protein 1) (mcip1) (adapt78). [source:swissprot;acc:p53805]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
218.508\vspace{3pt}}&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sal-like protein 2 (zinc finger protein sall2) (hsal2). [source:swissprot;acc:q9y467]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.471\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.876\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
4.595\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1331\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
arginine-glutamic acid dipeptide (re) repeats; atrophin 1-like; arginine glutamic acid dipeptide re repeats. [source:refseq;acc:nm\_012102]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
218.47\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.875\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
calcipressin 3 (down syndrome candidate region 1-like protein 2) (myocyte-enriched calcineurin interacting protein 3) (mcip3). [source:swissprot;acc:q9uka8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.509\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.649\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02275\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1332\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
atrophin-1 (dentatorubral-pallidoluysian atrophy protein). [source:swissprot;acc:p54259]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.471\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.876\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4.595\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome oxidase biogenesis protein oxa1, mitochondrial precursor (oxa1-like protein) (oxa1hs). [source:swissprot;acc:q15070]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
220.681\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
215.78\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.02271\vspace{3pt}}}\\\cline{1-2}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1333\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l34, mitochondrial precursor (l34mt). [source:swissprot;acc:q9bq48]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dead (asp-glu-ala-asp) box polypeptide 47; hqp0256 protein. [source:refseq;acc:nm\_016355]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.47\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.875\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4.595\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1334\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
jm4 protein. [source:refseq;acc:nm\_007213]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
199.643\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
204.163\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02264\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/