Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2608 to 2657 of 8289 in total 
Value Type: Measured
Network Comparison Type: Divided
Filtered: 1

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\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
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\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1304\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
periodic tryptophan protein 1 homolog (keratinocyte protein ief ssp 9502). [source:swissprot;acc:q13610]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
7973.12\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8254.66\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03531\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1305\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
calcium-dependent protease, small subunit (calpain regulatory subunit) (calcium-activated neutral proteinase) (canp). [source:swissprot;acc:p04632]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
7997.04\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8279.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03528\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glutaminyl-trna synthetase (ec 6.1.1.18) (glutamine--trna ligase) (glnrs). [source:swissprot;acc:p47897]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5500.92\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5949.26\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0815\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1306\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
grancalcin. [source:swissprot;acc:p28676]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7997.04\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8279.17\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03528\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
spermidine synthase (ec 2.5.1.16) (putrescine aminopropyltransferase) (spdsy). [source:swissprot;acc:p19623]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5500.92\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5949.26\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0815\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1307\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dynein light chain 1, cytoplasmic (8 kda dynein light chain) (dlc8) (protein inhibitor of neuronal nitric oxide synthase) (pin). [source:swissprot;acc:q15701]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8016.22\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8299.04\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03528\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glycyl-trna synthetase (ec 6.1.1.14) (glycine--trna ligase) (glyrs). [source:swissprot;acc:p41250]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5500.92\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
5949.26\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.0815\vspace{3pt}}}\\\cline{1-2}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1308\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
glutamyl trna synthetase. [source:sptrembl;acc:o14563]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sorcin (22 kda protein) (cp-22) (v19). [source:swissprot;acc:p30626]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
7997.04\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8279.17\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03528\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1309\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
coatomer beta' subunit (beta'-coat protein) (beta'-cop) (p102). [source:swissprot;acc:p35606]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
8065.69\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8350.17\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03527\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein ad-016 (protein cgi-116) (x0009). [source:swissprot;acc:q9y3c0]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
6110.09\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6607.81\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.08146\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1310\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
mitogen-activated protein kinase kinase kinase 7 interacting protein 1 (tak1-binding protein 1). [source:swissprot;acc:q15750]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6051.23\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6544.17\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sorting nexin 12. [source:swissprot;acc:q9umy4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8099.27\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8384.93\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03527\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1311\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
exocyst complex component sec8. [source:swissprot;acc:q96a65]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6221.22\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6727.77\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08142\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
rac-gamma serine/threonine protein kinase (ec 2.7.1.-) (rac-pk-gamma) (protein kinase akt-3) (protein kinase b, gamma) (pkb gamma) (stk-2). [source:swissprot;acc:q9y243]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
7651.24\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7921.13\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.03527\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1312\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
sorting nexin 3 (sdp3 protein). [source:swissprot;acc:o60493]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
8099.27\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8384.93\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
u2 small nuclear ribonucleoprotein b". [source:swissprot;acc:p08579]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
5675.96\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6136.47\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08113\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1313\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60 kda heat shock protein, mitochondrial precursor (hsp60) (60 kda chaperonin) (cpn60) (heat shock protein 60) (hsp-60) (mitochondrial matrix protein p1) (p60 lymphocyte protein) (hucha60). [source:swissprot;acc:p10809]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
5457.14\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5899.85\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08112\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
programmed cell death protein 6 (probable calcium-binding protein alg- 2). [source:swissprot;acc:o75340]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
7996.99\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8279.04\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03527\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1314\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
j domain protein c21orf55. [source:swissprot;acc:q9nx36]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
8264.88\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8556.26\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03526\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vacuolar protein sorting-associated protein 45 (h-vps45) (hlvps45). [source:swissprot;acc:q9nrw7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5401.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5838.63\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08095\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1315\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
apolipoprotein a-i binding protein; apoa-i binding protein. [source:refseq;acc:nm\_144772]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8286.86\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8578.98\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03525\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna polymerase gamma subunit 1 (ec 2.7.7.7) (mitochondrial dna polymerase catalytic subunit) (polg-alpha). [source:swissprot;acc:p54098]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
5685.77\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6145.43\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08084\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1316\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
orphan nuclear receptor nr2e1 (nuclear receptor tlx) (tailless homolog) (tll) (htll). [source:swissprot;acc:q9y466]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6105.93\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6599.41\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08082\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
putative dynein light chain protein dj8b22.1. [source:swissprot;acc:q9y3p0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8015.89\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8298.41\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03524\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1317\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
orphan nuclear receptor tr2. [source:swissprot;acc:p13056]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6105.69\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6599.06\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0808\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
topoisomerase-related function protein 4-2. [source:refseq;acc:nm\_022447]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
7944.18\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8224.05\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.03523\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1318\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
probable atp-dependent helicase ddx35 (deah-box protein 35). [source:swissprot;acc:q9h5z1]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
7610.71\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7878.8\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine-protein kinase nek1 (ec 2.7.1.37) (nima-related protein kinase 1) (ny-ren-55 antigen). [source:swissprot;acc:q96py6]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5961.97\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
6443.07\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.08069\vspace{3pt}}}\\\cline{1-2}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1319\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine-protein kinase nek3 (ec 2.7.1.37) (nima-related protein kinase 3) (hspk 36). [source:swissprot;acc:p51956]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
translocation protein 1; dtrp1 protein; membrane protein sec62, s.cerevisiae, homolog of. [source:refseq;acc:nm\_003262]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7856.06\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8132.83\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03523\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1320\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
glyceraldehyde 3-phosphate dehydrogenase, liver (ec 1.2.1.12) (gapdh). [source:swissprot;acc:p04406]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5961.97\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6443.07\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08069\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine--pyruvate aminotransferase (ec 2.6.1.51) (spt) (alanine-- glyoxylate aminotransferase) (ec 2.6.1.44) (agt). [source:swissprot;acc:p21549]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8265.23\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8556.37\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03522\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1321\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
suppressor of var1, 3-like 1. [source:refseq;acc:nm\_003171]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6439.79\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6959.21\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08066\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tubulin tyrosine ligase-like protein hottl (hqp0207). [source:swissprot;acc:q9y4r7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7859.24\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8136.03\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03522\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1322\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
bag-family molecular chaperone regulator-1 (bcl-2 binding athanogene- 1) (bag-1) (glucocorticoid receptor-associated protein rap46). [source:swissprot;acc:q99933]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6439.79\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6959.21\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08066\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein nkx-2.3 (homeobox protein nkx-2.3) (homeobox protein nk-2 homolog c). [source:swissprot;acc:q8tau0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7732.14\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8004.48\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03522\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1323\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
glycogen synthase kinase-3 alpha (ec 2.7.1.37) (gsk-3 alpha). [source:swissprot;acc:p49840]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6439.79\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6959.21\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08066\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein nkx-2.5 (homeobox protein nk-2 homolog e) (cardiac- specific homeobox) (homeobox protein csx). [source:swissprot;acc:p52952]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
7732.83\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8005.05\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.0352\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1324\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
collagen alpha 2(vi) chain precursor. [source:swissprot;acc:p12110]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
7757.13\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8030.19\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glycogen synthase kinase-3 beta (ec 2.7.1.37) (gsk-3 beta). [source:swissprot;acc:p49841]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6439.79\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6959.21\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08066\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1325\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
limkain beta 2. [source:refseq;acc:nm\_025140]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7891.21\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8168.98\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0352\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2b catalytic subunit, alpha isoform (ec 3.1.3.16) (calmodulin-dependent calcineurin a subunit, alpha isoform) (cam-prp catalytic subunit). [source:swissprot;acc:q08209]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
5656.79\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6112.02\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.08047\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1326\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial gtp binding protein isoform v. [source:refseq;acc:nm\_032620]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6222.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6723.54\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
putative protein-tyrosine phosphatase tpte (ec 3.1.3.48). [source:swissprot;acc:p56180]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8003.38\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8285\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03519\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1327\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
p protein (melanocyte-specific transporter protein). [source:swissprot;acc:q04671]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5656.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6111.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08045\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tpte and pten homologous inositol lipid phosphatase. [source:refseq;acc:nm\_130785]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8003.32\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8284.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03518\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1328\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2b catalytic subunit, beta isoform (ec 3.1.3.16) (calmodulin-dependent calcineurin a subunit, beta isoform) (cam-prp catalytic subunit). [source:swissprot;acc:p16299]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5656.81\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6111.84\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08044\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tyrosinase-related gene segment, exon 5 (fragment). [source:sptrembl;acc:q15677]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
7706.95\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7978.04\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.03517\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1329\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
5,6-dihydroxyindole-2-carboxylic acid oxidase precursor (ec 1.14.18.-) (dhica oxidase) (tyrosinase-related protein 1) (trp-1) (trp1) (trp) (catalase b) (glycoprotein-75) (melanoma antigen gp75). [source:swissprot;acc:p17643]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
7708.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7979.28\vspace{3pt}}&\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/