Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene Hugo description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2575 to 2624 of 3228 in total 
Value Type: Ranked
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

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\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2575\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PTPN2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein-tyrosine phosphatase, non-receptor type 2 (ec 3.1.3.48) (t- cell protein-tyrosine phosphatase) (tcptp). [source:swissprot;acc:p17706]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
209.583\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
209.255\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00157\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2576\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SNTB1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
beta-1-syntrophin (59 kda dystrophin-associated protein a1, basic component 1) (dapa1b) (tax interaction protein 43) (tip-43) (syntrophin 2) (bsyn2). [source:swissprot;acc:q13884]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
213.422\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.75\vspace{3pt}}&\multirow{12}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00154\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2577\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CANT1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ca2+-dependent endoplasmic reticulum nucleoside diphosphatase; apyrase; soluble calcium-activated nucleotidase scan-1. [source:refseq;acc:nm\_138793]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
192.625\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
192.922\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2578\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SNTB2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
beta-2-syntrophin (59 kda dystrophin-associated protein a1, basic component 2) (syntrophin 3) (snt3) (syntrophin-like) (sntl). [source:swissprot;acc:q13425]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
213.422\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
213.75\vspace{3pt}}}&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2579\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NIT1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nitrilase 1. [source:refseq;acc:nm\_005600]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2580\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
UTRN\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
utrophin (dystrophin-related protein 1) (drp1) (drp). [source:swissprot;acc:p46939]\vspace{3pt}}&&&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2581\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DTNB\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dystrobrevin beta (beta-dystrobrevin) (dtn-b). [source:swissprot;acc:o60941]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
213.428\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.756\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2582\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DBT\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial precursor (ec 2.3.1.-) (e2) (dihydrolipoamide branched chain transacylase) (bckad e2 subunit). [source:swissprot;acc:p11182]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
213.422\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.75\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2583\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DTNA\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dystrobrevin alpha (dystrobrevin-alpha). [source:swissprot;acc:q9y4j8]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
213.415\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.743\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2584\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dystrophin. [source:swissprot;acc:p11532]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
213.422\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
213.75\vspace{3pt}}}&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2585\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
AMOT\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
angiomotin. [source:refseq;acc:nm\_133265]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2586\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
AMOTL2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
angiomotin like 2; leman coiled-coil protein; angiomotin-like protein 2. [source:refseq;acc:nm\_016201]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2587\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SNTA1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
alpha-1-syntrophin (59 kda dystrophin-associated protein a1, acidic component 1) (pro-tgf-alpha cytoplasmic domain-interacting protein 1) (tacip1) (syntrophin 1). [source:swissprot;acc:q13424]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2588\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HSPD1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60 kda heat shock protein, mitochondrial precursor (hsp60) (60 kda chaperonin) (cpn60) (heat shock protein 60) (hsp-60) (mitochondrial matrix protein p1) (p60 lymphocyte protein) (hucha60). [source:swissprot;acc:p10809]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.305\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
222.64\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00151\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2589\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
FAM57A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
membrane protein expressed in epithelial-like lung adenocarcinoma. [source:refseq;acc:nm\_024792]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212.74\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212.422\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0015\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2590\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PSMA6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
proteasome subunit alpha type 6 (ec 3.4.25.1) (proteasome iota chain) (macropain iota chain) (multicatalytic endopeptidase complex iota chain) (27 kda prosomal protein) (pros-27) (p27k). [source:swissprot;acc:p34062]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
214.605\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
214.287\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00148\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2591\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PBRM1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
polybromo 1. [source:refseq;acc:nm\_018165]\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
220.02\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
219.696\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00147\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2592\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SMARCA5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
swi/snf-related matrix-associated actin-dependent regulator of chromatin a5; sucrose nonfermenting-like 5. [source:refseq;acc:nm\_003601]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2593\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SMARCA4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
possible global transcription activator snf2l4 (snf2-beta) (brg-1 protein) (mitotic growth and transcription activator) (brahma protein homolog 1). [source:swissprot;acc:p51532]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2594\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SMARCA1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
possible global transcription activator snf2l1. [source:swissprot;acc:p28370]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2595\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
BTAF1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tbp-associated factor 172 (taf-172) (taf(ii)170). [source:swissprot;acc:o14981]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2596\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SMARCA2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
possible global transcription activator snf2l2 (snf2-alpha). [source:swissprot;acc:p51531]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2597\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
IPO11\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ran binding protein 11. [source:refseq;acc:nm\_016338]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212.711\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212.401\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00146\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2598\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TAF5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription initiation factor tfiid 100 kda subunit (tafii-100) (tafii100). [source:swissprot;acc:q15542]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
202.142\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
202.436\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00145\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2599\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
KIAA1432\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ba207c16.2 (fragment). [source:sptrembl;acc:q9nql7]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
211.662\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
211.361\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00142\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2600\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HYAL3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
interferon-related developmental regulator 2 (skmc15 protein). [source:swissprot;acc:q12894]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.877\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
225.193\vspace{3pt}}&\multirow{7}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00141\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2601\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CNNM3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cyclin m3; ancient conserved domain protein 3. [source:refseq;acc:nm\_017623]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
214.502\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
214.2\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2602\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ARPC5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
arp2/3 complex 16 kda subunit (p16-arc) (actin-related protein 2/3 complex subunit 5). [source:swissprot;acc:o15511]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.875\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
225.192\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2603\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CNNM4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cyclin m4; ancient conserved domain protein 4. [source:refseq;acc:nm\_020184]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
214.494\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
214.192\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2604\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CNNM2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cyclin m2; ancient conserved domain protein 2. [source:refseq;acc:nm\_017649]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
214.486\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
214.184\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2605\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PRUNE\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tcd37 homolog; prune. [source:refseq;acc:nm\_021222]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
214.495\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
214.193\vspace{3pt}}&\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2606\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CNNM1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cyclin m1; ancient conserved domain protein 1. [source:refseq;acc:nm\_020348]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
214.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
214.198\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2607\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MRPS22\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mitochondrial 28s ribosomal protein s22 (s22mt) (mrp-s22) (gk002). [source:swissprot;acc:p82650]\vspace{3pt}}&\multirow{7}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
215.497\vspace{3pt}}}&\multirow{7}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
215.799\vspace{3pt}}}&\multirow{7}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.0014\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2608\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nefa-interacting nuclear protein nip30. [source:refseq;acc:nm\_024946]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2609\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
LMX1A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
lim homeobox transcription factor 1 alpha (lim/homeobox protein lmx1a) (lim-homeobox protein 1.1) (lmx-1.1). [source:swissprot;acc:q8te12]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2610\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TOMM70A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mitochondrial precursor proteins import receptor (translocase of outer membrane tom70). [source:swissprot;acc:o94826]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2611\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
LMX1B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
lim homeobox transcription factor 1 beta (lim/homeobox protein lmx1b) (lim-homeobox protein 1.2) (lmx-1.2). [source:swissprot;acc:o60663]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2612\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PSMB2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
proteasome subunit beta type 2 (ec 3.4.25.1) (proteasome component c7-i) (macropain subunit c7-i) (multicatalytic endopeptidase complex subunit c7-i). [source:swissprot;acc:p49721]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2613\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ARL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adp-ribosylation factor-like protein 1. [source:swissprot;acc:p40616]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2614\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RELA\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription factor p65 (nuclear factor nf-kappa-b p65 subunit). [source:swissprot;acc:q04206]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
202.821\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
202.54\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00139\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2615\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
RELB\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription factor relb (i-rel). [source:swissprot;acc:q01201]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2616\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NFKBIA\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nf-kappab inhibitor alpha (major histocompatibility complex enhancer- binding protein mad3) (i-kappa-b-alpha) (ikappabalpha) (ikb-alpha). [source:swissprot;acc:p25963]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2617\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CPOX\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
coproporphyrinogen iii oxidase, mitochondrial precursor (ec 1.3.3.3) (coproporphyrinogenase) (coprogen oxidase) (cox). [source:swissprot;acc:p36551]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2618\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
IDH2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
isocitrate dehydrogenase [nadp], mitochondrial precursor (ec 1.1.1.42) (oxalosuccinate decarboxylase) (idh) (nadp+-specific icdh) (idp) (icd-m). [source:swissprot;acc:p48735]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
190.166\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
190.429\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00138\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2619\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SMARCC2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
swi/snf-related matrix-associated actin-dependent regulator of chromatin c2 isoform a; mammalian chromatin remodeling complex brg1-associated factor 170; chromatin remodeling complex baf170 subunit; swi3-like protein; swi/snf complex 170 kda subunit. [source:refseq;acc:nm\_003075]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
220.024\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
219.722\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00137\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
2620\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PSMD9\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
26s proteasome non-atpase regulatory subunit 9 (26s proteasome regulatory subunit p27). [source:swissprot;acc:o00233]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.615\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215.91\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2621\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dj470l14.3 (novel protein similar to the arp2/3 protein complex subunit p21-arc (arc21)). [source:sptrembl;acc:q9h5b6]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
224.891\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
225.195\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.00135\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2622\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ZMYM6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
zinc finger protein 258. [source:refseq;acc:nm\_145310]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2623\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ZMYM3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
zinc finger protein 261 (dxs6673e protein). [source:swissprot;acc:q14202]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
2624\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ZMYM4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
zinc finger protein 262; cell death inhibiting rna. [source:refseq;acc:nm\_005095]\vspace{3pt}}&&&\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/