Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2563 to 2612 of 8289 in total 
Value Type: Measured
Network Comparison Type: Divided
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1282\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear hormone receptor nor-1 (neuron-derived orphan receptor 1) (mitogen induced nuclear orphan receptor). [source:swissprot;acc:q92570]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6230.38\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6744.35\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08249\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
rap2c, member of ras oncogene family. [source:refseq;acc:nm\_021183]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7922.09\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8203.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03548\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1283\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
orphan nuclear receptor nurr1 (immediate-early response protein not) (transcriptionally inducible nuclear receptor). [source:swissprot;acc:p43354]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6229.16\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6742.79\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08246\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
polymerase (dna directed) sigma; topoisomerase-related function protein 4-1; polymerase (dna-directed) sigma. [source:refseq;acc:nm\_006999]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
7937.99\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8219.61\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03548\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1284\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor (ec 2.3.1.61) (e2) (e2k). [source:swissprot;acc:p36957]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
8123.15\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8411.27\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03547\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
xenotropic and polytropic retrovirus receptor. [source:refseq;acc:nm\_004736]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
6413.32\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6941.48\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08235\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1285\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytosolic nonspecific dipeptidase (glutamate carboxypeptidase-like protein 1). [source:swissprot;acc:q96kp4]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6207.57\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6718.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08234\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
potential phospholipid-transporting atpase ia (ec 3.6.3.1) (chromaffin granule atpase ii) (atpase class i type 8a member 1). [source:swissprot;acc:q9y2q0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8090.84\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8377.72\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03546\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1286\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome p450 4a11 precursor (ec 1.14.15.3) (cypiva11) (fatty acid omega-hydroxylase) (p-450 hk omega) (lauric acid omega-hydroxylase) (cyp4aii) (p450-hl-omega). [source:swissprot;acc:q02928]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5655.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6120.64\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08218\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein cgi-147. [source:swissprot;acc:q9y3e5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7984.82\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8267.92\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03545\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1287\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome p450 4f3 (ec 1.14.13.30) (cypivf3) (leukotriene-b4 omega- hydroxylase) (leukotriene-b4 20-monooxygenase) (cytochrome p450- ltb-omega). [source:swissprot;acc:q08477]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5655.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6120.64\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08218\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleosome assembly protein 1-like 1 (nap-1 related protein). [source:swissprot;acc:p55209]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8101.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8388.73\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03544\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1288\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome p450 4f8 (ec 1.14.14.1) (cypivf8). [source:swissprot;acc:p98187]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5655.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6120.64\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08218\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
exocyst complex component sec3 (bm-012). [source:swissprot;acc:q9nv70]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7636.25\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7906.88\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03544\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1289\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
likely ortholog of rat cytochrome p450 4x1. [source:refseq;acc:nm\_178033]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5655.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6120.64\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08218\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor iib. [source:refseq;acc:nm\_013242]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7732.23\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8006.22\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03543\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1290\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome p450 4f12 (ec 1.14.14.1) (cypivf12). [source:swissprot;acc:q9hcs2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5655.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6120.64\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08218\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
microsomal signal peptidase 25 kda subunit (ec 3.4.-.-) (spase 25 kda subunit) (spc25). [source:swissprot;acc:q15005]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7696.72\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7969.31\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03542\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1291\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome p450 4f2 (ec 1.14.13.30) (cypivf2) (leukotriene-b4 omega- hydroxylase) (leukotriene-b4 20-monooxygenase) (cytochrome p450- ltb-omega). [source:swissprot;acc:p78329]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5655.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6120.64\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08218\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
uridine 5'-monophosphate synthase (ump synthase) [includes: orotate phosphoribosyltransferase (ec 2.4.2.10) (oprtase); orotidine 5'- phosphate decarboxylase (ec 4.1.1.23) (ompdecase)]. [source:swissprot;acc:p11172]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7696.72\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7969.31\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03542\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1292\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome p450 4f11 (ec 1.14.14.1) (cypivf11). [source:swissprot;acc:q9hbi6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5655.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6120.64\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08218\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
retinal short chain dehydrogenase reductase. [source:refseq;acc:nm\_138969]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8126.55\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8414.34\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03541\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1293\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dj18d14.4 (cytochrome p450, subfamily iva, polypeptide 11). [source:sptrembl;acc:q9ntl5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5655.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6120.64\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08218\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
stress-induced-phosphoprotein 1 (sti1) (hsp70/hsp90-organizing protein) (transformation-sensitive protein ief ssp 3521). [source:swissprot;acc:p31948]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8238.56\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8530.09\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03539\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1294\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
sestrin 3. [source:swissprot;acc:p58005]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5655.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6120.65\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08218\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tfiih basal transcription factor complex helicase xpb subunit (ec 3.6.1.-) (basic transcription factor 2 89 kda subunit) (btf2-p89) (tfiih 89 kda subunit) (dna-repair protein complementing xp-b cells) (xeroderma pigmentosum group b complementing protein) (dna excision repair protein ercc-3). [source:swissprot;acc:p19447]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8238.56\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8530.09\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03539\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1295\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome p450 4b1 (ec 1.14.14.1) (cypivb1) (p450-hp). [source:swissprot;acc:p13584]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5655.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6120.64\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08218\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
similar to smhs1 protein. [source:refseq;acc:nm\_145244]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8280.08\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8573.01\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03538\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1296\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
flotillin-1. [source:swissprot;acc:o75955]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5655.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6120.64\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08218\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor-like nuclear regulator; putative transcription regulation nuclear protein; putative transcription factor-like nuclear regulator; tata box binding protein (tbp)-associated factor, rna polymerase iii, gtf3b subunit 1; b''90 component. [source:refseq;acc:nm\_018429]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
7940.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8221.61\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.03537\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1297\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
nadh-ubiquinone oxidoreductase 13 kda-b subunit (ec 1.6.5.3) (ec 1.6.99.3) (complex i-13kd-b) (ci-13kd-b) (complex i subunit b13). [source:swissprot;acc:q16718]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
7940.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8221.53\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sestrin 2 (hi95). [source:swissprot;acc:p58004]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5655.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6120.65\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08218\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1298\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
nadh-ubiquinone oxidoreductase 30 kda subunit, mitochondrial precursor (ec 1.6.5.3) (ec 1.6.99.3) (complex i-30kd) (ci-30kd). [source:swissprot;acc:o75489]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7940.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8221.53\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03537\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sestrin 1 (p53-regulated protein pa26). [source:swissprot;acc:q9y6p5]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
5655.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6120.62\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08218\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1299\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome oxidase biogenesis protein oxa1, mitochondrial precursor (oxa1-like protein) (oxa1hs). [source:swissprot;acc:q15070]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
5589.33\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6047.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08204\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 3 subunit 6 (eif-3 p48) (eif3e) (mammary tumor-associated protein int-6) (viral integration site protein int-6). [source:swissprot;acc:q64252]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7940.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8221.53\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03537\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1300\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l34, mitochondrial precursor (l34mt). [source:swissprot;acc:q9bq48]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5589.33\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6047.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08204\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dead-box protein 4 (vasa homolog). [source:swissprot;acc:q9nqi0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7791.29\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8066.73\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03535\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1301\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial precursor (ec 1.5.5.1) (etf-qo) (etf-ubiquinone oxidoreductase) (etf dehydrogenase) (electron-transferring- flavoprotein dehydrogenase). [source:swissprot;acc:q16134]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6618.74\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7161.67\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08203\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
rtp801. [source:refseq;acc:nm\_019058]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
8263.84\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8555.89\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.03534\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1302\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 2 subunit 3 (eukaryotic translation initiation factor 2 gamma subunit) (eif-2-gamma). [source:swissprot;acc:p41091]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
8020.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8304.09\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
peroxiredoxin 4 (ec 1.11.1.-) (prx-iv) (thioredoxin peroxidase ao372) (thioredoxin-dependent peroxide reductase a0372) (antioxidant enzyme aoe372) (aoe37-2). [source:swissprot;acc:q13162]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
6343.26\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6862.94\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08193\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1303\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cysteine-rich motor neuron 1; cysteine-rich repeat-containing protein s52 precursor. [source:refseq;acc:nm\_016441]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6334.15\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6852.61\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08185\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna mismatch repair protein mlh1 (mutl protein homolog 1). [source:swissprot;acc:p40692]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8249.09\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8540.61\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03534\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1304\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
fibulin-1 precursor. [source:swissprot;acc:p23142]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8550.79\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9248.06\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08154\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
periodic tryptophan protein 1 homolog (keratinocyte protein ief ssp 9502). [source:swissprot;acc:q13610]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
7973.12\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8254.66\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03531\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1305\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
calcium-dependent protease, small subunit (calpain regulatory subunit) (calcium-activated neutral proteinase) (canp). [source:swissprot;acc:p04632]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
7997.04\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8279.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03528\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glutaminyl-trna synthetase (ec 6.1.1.18) (glutamine--trna ligase) (glnrs). [source:swissprot;acc:p47897]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5500.92\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5949.26\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0815\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1306\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
grancalcin. [source:swissprot;acc:p28676]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7997.04\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8279.17\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03528\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
spermidine synthase (ec 2.5.1.16) (putrescine aminopropyltransferase) (spdsy). [source:swissprot;acc:p19623]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5500.92\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5949.26\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0815\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/