Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1908 to 1957 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
477\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
vav-3 protein. [source:swissprot;acc:q9ukw4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
31248.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
37623.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.204\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
478\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
histone h2b.c (h2b/c). [source:swissprot;acc:q99880]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.6084\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
55.2961\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09263\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
signal recognition particle 9 kda protein (srp9). [source:swissprot;acc:p49458]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
16318.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
19645.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.2039\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
star-related lipid transfer protein 13 (stard13) (start domain- containing protein 13) (46h23.2). [source:swissprot;acc:q9y3m8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9649.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11053.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14549\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor iiib 90 kda subunit (tfiiib90) (htfiiib90) (b- related factor 1) (hbrf) (tata box-binding protein-associated factor, rna polymerase iii, subunit 2) (taf3b2). [source:swissprot;acc:q92994]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
228.051\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212.321\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07409\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
479\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
histone h2b.q (h2b/q) (h2b-gl105). [source:swissprot;acc:q16778]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.6084\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
55.2961\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09263\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleolar protein family a, member 1; gar1 protein. [source:refseq;acc:nm\_018983]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
228.051\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212.321\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07409\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
star-related lipid transfer protein 8 (stard8) (start domain- containing protein 8). [source:swissprot;acc:q92502]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9649.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11053.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14549\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
translation initiation factor if-2. [source:swissprot;acc:o60841]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24031.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
28929.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.20382\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
480\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
histone h3.1 (h3/a) (h3/c) (h3/d) (h3/f) (h3/h) (h3/i) (h3/j) (h3/k) (h3/l). [source:swissprot;acc:p16106]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.6084\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
55.2961\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09263\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
neuronal acetylcholine receptor protein, alpha-2 chain precursor. [source:swissprot;acc:q15822]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9649.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11053.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14549\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
neuropilin- and tolloid-like protein 2 precursor. [source:refseq;acc:nm\_018092]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
237.109\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
254.667\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07405\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
phosphatidate cytidylyltransferase 1 (ec 2.7.7.41) (cdp-diglyceride synthetase 1) (cdp-diglyceride pyrophosphorylase 1) (cdp- diacylglycerol synthase 1) (cds 1) (ctp:phosphatidate cytidylyltransferase 1) (cdp-dag synthase 1) (cdp-dg synthetase 1). [source:swissprot;acc:q92903]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26874.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32347.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.20364\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
481\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
histone h2b. [source:refseq;acc:nm\_175055]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.6084\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
55.2961\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09263\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitogen-activated protein kinase-activated protein kinase 3; mapkap kinase 3. [source:refseq;acc:nm\_004635]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9649.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11053.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14549\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
neuropilin- and tolloid-like protein 1 isoform 3 precursor. [source:refseq;acc:nm\_138966]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
237.109\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
254.667\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07405\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
signal recognition particle 9 kda protein (srp9). [source:swissprot;acc:p49458]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
16335.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
19660.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.20353\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
482\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
heterogenous nuclear ribonucleoprotein u (hnrnp u) (scaffold attachment factor a) (saf-a). [source:swissprot;acc:q00839]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
237.109\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
254.667\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07405\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
histone h2b.s (h2b/s). [source:swissprot;acc:p57053]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.6084\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
55.2961\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09263\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitogen-activated protein kinase 14 (ec 2.7.1.37) (mitogen-activated protein kinase p38alpha) (map kinase p38alpha) (cytokine suppressive anti-inflammatory drug binding protein) (csaid binding protein) (csbp) (max-interacting protein 2) (map kinase mxi2) (sapk2a). [source:swissprot;acc:q16539]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9649.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11053.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14549\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
solute carrier family 13, member 3 (sodium-dependent high-affinity dicarboxylate transporter 2) (na(+)/dicarboxylate cotransporter 3) (nadc-3) (hnadc3). [source:swissprot;acc:q8wwt9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26867.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32335.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.20352\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
483\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
histone h2b.d (h2b/d). [source:swissprot;acc:q99877]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.6084\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
55.2961\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09263\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
neuronal acetylcholine receptor protein, alpha-4 chain precursor. [source:swissprot;acc:p43681]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9649.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11053.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14549\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
runt-related transcription factor 2 (core-binding factor, alpha 1 subunit) (cbf-alpha 1) (acute myeloid leukemia 3 protein) (oncogene aml-3) (polyomavirus enhancer binding protein 2 alpha a subunit) (pebp2-alpha a) (pea2-alpha a) (sl3-3 enhancer factor 1 alpha a subunit) (sl3/akv core-binding factor alpha a subunit) (osteoblast- specific transcription factor 2) (osf-2). [source:swissprot;acc:q13950]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
237.109\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
254.667\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07405\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
solute carrier family 13, member 2 (renal sodium/dicarboxylate cotransporter) (na(+)/dicarboxylate cotransporter 1) (nadc-1). [source:swissprot;acc:q13183]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26867.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32335.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.20352\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
484\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
e1b-55kda-associated protein 5 isoform a. [source:refseq;acc:nm\_007040]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
237.109\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
254.667\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07405\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
histone h3.4 (h3t) (h3/t) (h3/g). [source:swissprot;acc:q16695]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.6084\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
55.2961\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09263\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
neuronal acetylcholine receptor protein, alpha-3 chain precursor. [source:swissprot;acc:p32297]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9649.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11053.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14549\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
solute carrier family 13, member 4 (na+/sulfate cotransporter sut-1). [source:swissprot;acc:q9ukg4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26867.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32335\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.20351\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
485\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l18. [source:swissprot;acc:q07020]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
237.109\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
254.667\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07405\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
solute carrier family 13, member 1 (renal sodium/sulfate cotransporter) (na(+)/sulfate cotransporter) (hnasi-1). [source:swissprot;acc:q9bzw2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26867.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32335\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.20351\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sphingosine kinase 2 (ec 2.7.1.-) (sk 2) (spk 2). [source:swissprot;acc:q9nra0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9649.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11053.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14549\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
testis-specific histone h2b; h2b histone family, member u, (testis-specific). [source:refseq;acc:nm\_170610]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
50.6084\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
55.2961\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.09263\vspace{3pt}}}\\\cline{1-2}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
486\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
histone h2b.e (h2b/e). [source:swissprot;acc:q99879]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mct-1 protein. [source:refseq;acc:nm\_014060]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
226.313\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
243.03\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07387\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
secretory carrier-associated membrane protein 2. [source:swissprot;acc:o15127]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26865.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32332.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.20349\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
stem cell growth factor; lymphocyte secreted c-type lectin; lymphocyte secreted c-type lectin. [source:refseq;acc:nm\_002975]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10908.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12491.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14513\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
487\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial ribosomal protein l22. [source:refseq;acc:nm\_014180]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
226.313\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
243.03\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07387\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
pyrroline 5-carboxylate reductase isoform. [source:refseq;acc:nm\_013328]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5277.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6042.88\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14505\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
secretory carrier-associated membrane protein 3. [source:swissprot;acc:o14828]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26865.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32332.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.20349\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tgf beta-inducible nuclear protein 1; hairy cell leukemia protein 1. [source:refseq;acc:nm\_014886]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.0015\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
54.627\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09251\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
488\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
c-type lectin superfamily member 1 precursor (cartilage-derived c-type lectin). [source:swissprot;acc:o75596]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10872.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
12447\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14483\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase iii largest subunit (ec 2.7.7.6) (rpc155) (rpc1). [source:swissprot;acc:o14802]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.4315\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
46.1703\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09229\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
secretory carrier-associated membrane protein 1. [source:swissprot;acc:o15126]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26866.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32333.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.20349\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
squamous cell carcinoma antigen recognized by t cells 1; u4/u6.u5 tri-snrnp-associated 110 kda protein; ige autoantigen; sart1(259) protein; sart1(800) protein. [source:refseq;acc:nm\_005146]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
225.026\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
209.798\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07258\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
489\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l12, mitochondrial precursor (l12mt) (5c5-2). [source:swissprot;acc:p52815]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
50.5505\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
46.2797\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09228\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
phosphatidate cytidylyltransferase 2 (ec 2.7.7.41) (cdp-diglyceride synthetase 2) (cdp-diglyceride pyrophosphorylase 2) (cdp- diacylglycerol synthase 2) (cds 2) (ctp:phosphatidate cytidylyltransferase 2) (cdp-dag synthase 2) (cdp-dg synthetase 2). [source:swissprot;acc:o95674]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26859\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32321.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.20337\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein phosphatase 2c beta isoform (ec 3.1.3.16) (pp2c-beta). [source:swissprot;acc:o75688]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
231.276\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215.627\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07257\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
pyrroline-5-carboxylate reductase (ec 1.5.1.2) (p5cr) (p5c reductase). [source:swissprot;acc:p32322]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5281.11\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6044.61\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.14457\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
490\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
forkhead box p4; fork head-related protein like a; winged-helix repressor foxp4. [source:refseq;acc:nm\_138457]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5301.97\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6377.93\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.20294\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/