Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2333 to 2382 of 3228 in total
Value Type: Measured
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1
\def\wcA{0.16666666666667\textwidth} \def\wcB{0.16666666666667\textwidth} \def\wcC{0.16666666666667\textwidth} \def\wcD{0.16666666666667\textwidth} \def\wcE{0.16666666666667\textwidth} \begin{longtable}{|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent 2333\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent thioredoxin, mitochondrial precursor (mt-trx) (thioredoxin 2). [source:swissprot;acc:q99757]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6773.67\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7075.51\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04456\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2334\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent lipopolysaccharide-binding protein precursor (lbp). [source:swissprot;acc:p18428]\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5123.89\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5350.78\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.04428\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2335\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent microsomal signal peptidase 25 kda subunit (ec 3.4.-.-) (spase 25 kda subunit) (spc25). [source:swissprot;acc:q15005]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2336\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent uridine 5'-monophosphate synthase (ump synthase) [includes: orotate phosphoribosyltransferase (ec 2.4.2.10) (oprtase); orotidine 5'- phosphate decarboxylase (ec 4.1.1.23) (ompdecase)]. [source:swissprot;acc:p11172]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2337\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent cleft lip and palate associated transmembrane protein 1. [source:refseq;acc:nm\_001294]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2338\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent bactericidal permeability-increasing protein precursor (bpi) (cap 57). [source:swissprot;acc:p17213]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2339\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent phospholipid transfer protein precursor (lipid transfer protein ii). [source:swissprot;acc:p55058]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2340\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent alpha crystallin c chain (small stress protein-like protein hsp22) (e2ig1) (protein kinase h11). [source:swissprot;acc:q9ujy1]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5607.81\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5855.72\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04421\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2341\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent heat shock 27 kda protein (hsp 27) (stress-responsive protein 27) (srp27) (estrogen-regulated 24 kda protein) (28 kda heat shock protein). [source:swissprot;acc:p04792]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5606.66\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5854.45\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0442\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2342\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent acetyl-coenzyme a synthetase, cytoplasmic (ec 6.2.1.1) (acetate--coa ligase) (acyl-activating enzyme) (acetyl-coa synthetase) (acs) (acecs). [source:swissprot;acc:q9nr19]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7007.72\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7317.15\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04416\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2343\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 40s ribosomal protein s5. [source:swissprot;acc:p46782]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3672.17\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3516.98\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04413\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2344\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent carboxypeptidase a5. [source:refseq;acc:nm\_080385]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 8353.97\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 8001.45\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.04406\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2345\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent carboxypeptidase b precursor (ec 3.4.17.2) (pancreas-specific protein) (pasp). [source:swissprot;acc:p15086]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2346\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent neutral and basic amino acid transport protein rbat (b(0,+)-type amino acid transport protein) (nbat) (d2h). [source:swissprot;acc:q07837]\vspace{3pt}}&&&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2347\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ral guanine nucleotide exchange factor ralgps1a. [source:refseq;acc:nm\_014636]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6480.27\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6765.81\vspace{3pt}}}&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2348\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ral-a exchange factor ralgps2. [source:refseq;acc:nm\_152663]\vspace{3pt}}&&&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2349\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent aminoacylase-1 (ec 3.5.1.14) (n-acyl-l-amino-acid amidohydrolase) (acy-1). [source:swissprot;acc:q03154]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 8353.97\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 8001.45\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2350\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent stip1 homology and u-box containing protein 1; serologically defined colon cancer antigen 7; carboxy terminus of hsp70p-interacting protein; heat shock protein a binding protein 2 (c-terminal). [source:refseq;acc:nm\_005861]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6480.27\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6765.81\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2351\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent carboxypeptidase a1 precursor (ec 3.4.17.1). [source:swissprot;acc:p15085]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 8353.97\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 8001.45\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2352\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent coatomer epsilon subunit (epsilon-coat protein) (epsilon-cop). [source:swissprot;acc:o14579]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 8493.7\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 8135.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04402\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2353\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent signal transducer and activator of transcription 5b. [source:swissprot;acc:p51692]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5516.82\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5758.48\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0438\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2354\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent signal transducer and activator of transcription 5a. [source:swissprot;acc:p42229]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5516.67\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5758.22\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04379\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2355\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent atrophin-1 interacting protein 1; activin receptor interacting protein 1; likely ortholog of mouse activin receptor interacting protein 1; atrophin-1 interacting protein a; membrane associated guanylate kinase 2; activin receptor interacting p. [source:refseq;acc:nm\_012301]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5262.6\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5492.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0437\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2356\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent signal transducer and activator of transcription 6 (il-4 stat). [source:swissprot;acc:p42226]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5515.12\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5755.63\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04361\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2357\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent signal transducer and activator of transcription 3 (acute-phase response factor). [source:swissprot;acc:p40763]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5514.85\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5755.17\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.04358\vspace{3pt}}}\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2358\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent signal transducer and activator of transcription 4. [source:swissprot;acc:q14765]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5514.83\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5755.14\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2359\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent signal transducer and activator of transcription 1-alpha/beta (transcription factor isgf-3 components p91/p84). [source:swissprot;acc:p42224]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5514.81\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5755.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04357\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2360\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l4 (l1). [source:swissprot;acc:p36578]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3843.06\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3682.72\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04354\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2361\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dna directed rna polymerase ii polypeptide j-related gene isoform 1; rpb11b1alpha protein; rpb11b1beta; dna-directed rna polymerase ii subunit 11. [source:refseq;acc:nm\_145325]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4674.38\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4877.31\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04341\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2362\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dna directed rna polymerase ii polypeptide j-related gene isoform 3; rpb11b1alpha protein; rpb11b1beta; dna-directed rna polymerase ii subunit 11. [source:refseq;acc:nm\_032959]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4673.96\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4876.71\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04338\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2363\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent glutamate--cysteine ligase regulatory subunit (ec 6.3.2.2) (gamma- glutamylcysteine synthetase) (gamma-ecs) (gcs light chain) (glutamate--cysteine ligase modifier subunit). [source:swissprot;acc:p48507]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6822.6\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6539.8\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.04324\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2364\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent glutamate--cysteine ligase catalytic subunit (ec 6.3.2.2) (gamma- glutamylcysteine synthetase) (gamma-ecs) (gcs heavy chain). [source:swissprot;acc:p48506]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2365\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent bai1-associated protein 1; ww domain-containing protein 3; atrophin-1 interacting protein 3. [source:refseq;acc:nm\_004742]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5254.55\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5480.56\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04301\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2366\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent geranylgeranyl transferase type i beta subunit (ec 2.5.1.-) (type i protein geranyl-geranyltransferase beta subunit) (ggtase-i-beta). [source:swissprot;acc:p53609]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5265.95\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5492.28\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.04298\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2367\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent fatty acid desaturase 3; linoleoyl-coa desaturase (delta-6-desaturase)-like 3; delta-6 fatty acid desaturase. [source:refseq;acc:nm\_021727]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2368\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent mothers against decapentaplegic homolog 4 (smad 4) (mothers against dpp homolog 4) (deletion target in pancreatic carcinoma 4) (hsmad4). [source:swissprot;acc:q13485]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2369\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent fatty acid desaturase 2; linoleoyl-coa desaturase (delta-6-desaturase)-like 2; delta-6 fatty acid desaturase. [source:refseq;acc:nm\_004265]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2370\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent fatty acid desaturase 1; linoleoyl-coa desaturase (delta-6-desaturase)-like 1; delta-5 desaturase; delta-5 fatty acid desaturase. [source:refseq;acc:nm\_013402]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2371\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dna-directed rna polymerase ii 13.3 kda polypeptide (ec 2.7.7.6) (rpb11). [source:swissprot;acc:p52435]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4668.29\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4868.52\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04289\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2372\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l12, mitochondrial precursor (l12mt) (5c5-2). [source:swissprot;acc:p52815]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 3677.53\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 3526.65\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.04278\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2373\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent nudix (nucleoside diphosphate linked moiety x)-type motif 12. [source:refseq;acc:nm\_031438]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2374\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dna-directed rna polymerase iii largest subunit (ec 2.7.7.6) (rpc155) (rpc1). [source:swissprot;acc:o14802]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3669.57\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3520.86\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04224\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2375\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent trna pseudouridine synthase a (ec 4.2.1.70) (pseudouridylate synthase i) (pseudouridine synthase i) (uracil hydrolyase). [source:swissprot;acc:q9y606]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3650.02\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3502.81\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04203\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2376\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent cysteine-rich protein 1 (crp1) (crp). [source:swissprot;acc:p21291]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3976.48\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3816.38\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04195\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2377\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent likely ortholog of mouse shc sh2-domain binding protein 1. [source:refseq;acc:nm\_024745]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3977.7\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3818.01\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04183\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2378\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent smooth muscle cell lim protein (cysteine-rich protein 2) (crp2) (lim-only protein 5). [source:swissprot;acc:q16527]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3977.76\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3818.09\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04182\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2379\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent lim domain protein, cardiac (muscle lim protein) (cysteine-rich protein 3) (crp3). [source:swissprot;acc:p50461]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3979.06\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3819.84\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04168\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2380\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent suppressor of ty 5 homolog; suppressor of ty (s.cerevisiae) 5 homolog. [source:refseq;acc:nm\_003169]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3690.79\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3543.33\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04162\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2381\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dna-directed rna polymerase i largest subunit (ec 2.7.7.6) (rna polymerase i 194 kda subunit) (rpa194). [source:swissprot;acc:o95602]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3667.94\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3521.41\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04161\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2382\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent hydroxyacid oxidase 2 (ec 1.1.3.15) (haox2) ((s)-2-hydroxy-acid oxidase, peroxisomal) (long chain alpha-hydroxy acid oxidase) (long- chain l-2-hydroxy acid oxidase). [source:swissprot;acc:q9nyq3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4457.6\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4642.72\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04153\vspace{3pt}}\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/