MK5 Microarray Data

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.

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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].

Filtered	Value Type	Gene	Network Comparison Type	red	Rank	Interaction Map	green	network_comparison	description

Results: HTML CSV LaTeX

Showing element 51 to 100 of 19268 in total

Filtered  : 0
Value Type  : Ranked
Network Comparison Type  : Divided
Interaction Map  : Low confidence

red	Rank	green	network_comparison	description
4240.65	168	4836.56	1.14052	zinc finger protein zfp6 (fragment). [sptrembl;acc:q92967]
4241.01	169	4836.94		zinc finger protein 8 (zinc finger protein hf.18) (fragment). [swissprot;acc:p17098]
4241.64	170	4837.61	1.1405	b-lymphocyte activation-related protein. [sptrembl;acc:q96pn3]
4242.53	171	4838.56	1.14049	zinc finger protein 169 (fragment). [swissprot;acc:q14929]
4244.56	172	4840.72	1.14045	zinc finger protein 350; zinc-finger protein zbrk1. [refseq;acc:nm_021632]
4244.83	174	4840.99	1.14044	similar to zinc finger protein 20 (zinc finger protein kox13) (dkfzp572p0920). [refseq;acc:nm_145233]
	175			zinc finger protein 222. [swissprot;acc:q9uk12]
4245	173	4841.18		zinc finger protein 223. [swissprot;acc:q9uk11]
4245.17	176	4841.36		zinc finger imprinted 3. [swissprot;acc:q96pe6]
4246.04	177	4842.29	1.14042	zinc finger protein 233. [refseq;acc:nm_181756]
4246.22	178	4842.47		zinc finger protein 334. [swissprot;acc:q9hcz1]
4246.65	179	4842.93	1.14041	krab zinc finger protein hzf26 (fragment). [sptrembl;acc:q9bze6]
4246.82	180	4843.11		zinc finger protein 195. [swissprot;acc:o14628]
4247.08	181	4843.39	1.1404	zinc finger protein 230 (zinc finger protein fdzf2). [swissprot;acc:q9uie0]
4247.25	182	4843.57		novel c2h2 type zinc finger protein. [refseq;acc:nm_024325]
4247.67	183	4844.02	1.14039	zinc finger protein 358. [swissprot;acc:q9nw07]
4248.44	185	4844.83	1.14038	zinc finger protein 337. [swissprot;acc:q9y3m9]
4248.61	184	4845.01		zinc finger protein 134. [swissprot;acc:p52741]
4249.03	186	4845.46	1.14037	zinc finger protein zfp-36 (fragment). [swissprot;acc:p16415]
4249.62	187	4846.09	1.14036	zinc finger protein 2. [refseq;acc:nm_021088]
4249.87	191	4846.36	1.14035	zinc finger protein 19 (zinc finger protein kox12) (fragment). [swissprot;acc:p17023]
4250.04	188	4846.54		zinc finger protein 73 (zinc finger protein 186) (hznf2). [swissprot;acc:o43830]
4250.21	189	4846.71		zinc finger protein 354a (transcription factor 17) (zinc finger protein eznf). [swissprot;acc:o60765]
	190			zinc finger protein 155. [swissprot;acc:q12901]
4250.46	192	4846.98	1.14034	zinc finger protein 257 (bone marrow zinc finger 4) (bmzf-4). [swissprot;acc:q9y2q1]
	193			krueppel-related zinc finger protein 1 (hkr1 protein). [swissprot;acc:p10072]
4250.79	194	4847.33		zinc finger protein 62; likely ortholog of mouse zinc finger protein 62. [refseq;acc:nm_152283]
4251.04	195	4847.6	1.14033	zinc finger protein mgc21738. [refseq;acc:nm_145044]
4251.2	196	4847.77		zinc finger protein 354c; krab-zinc finger protein synten. [refseq;acc:nm_014594]
	199			pr-domain zinc finger protein 9. [swissprot;acc:q9nqv7]
4251.37	197	4847.95		zinc finger protein zfd25. [swissprot;acc:q9uii5]
	198			zinc finger protein 44 (zinc finger protein kox7) (gonadotropin inducible transcription repressor-2) (giot-2). [swissprot;acc:p15621]
	200			zinc finger protein 221. [swissprot;acc:q9uk13]
4251.62	201	4848.21	1.14032	zinc finger protein 197 (znf20). [swissprot;acc:o14709]
	202			similar to zinc finger protein 85 (zinc finger protein hpf4) (htf1). [refseq;acc:nm_033196]
4251.95	203	4848.56	1.14031	zinc finger protein 224. [swissprot;acc:q9nzl3]
	204			zinc finger protein 74 (hznf7). [swissprot;acc:q16587]
4252.19	206	4848.83		zinc finger protein 117 (zinc finger protein hpf9) (fragment). [swissprot;acc:q03924]
	207			zinc finger protein 141. [swissprot;acc:q15928]
4252.36	205	4849		zinc finger protein 285. [refseq;acc:nm_152354]
4252.77	209	4849.44	1.1403	zinc finger protein 35 (zinc finger protein hf.10). [swissprot;acc:p13682]
4252.93	208	4849.61		dj54b20.4 (novel krab box containing c2h2 type zinc finger protein). [sptrembl;acc:q96qh7]
	210			dj54b20.2 (novel krab box containing c2h2 type zinc finger protein) (fragment). [sptrembl;acc:q96qh9]
	211			ba526d8.4 (novel krab box containing c2h2 type zinc finger protein) (fragment). [sptrembl;acc:q9h559]
	212			zinc finger protein 228. [swissprot;acc:q9uju3]
4253.18	215	4849.87	1.14029	zinc finger protein 10 (zinc finger protein kox1) (fragment). [swissprot;acc:p21506]
	216			zinc finger protein 225. [swissprot;acc:q9uk10]
	217			zinc finger protein 256 (bone marrow zinc finger 3) (bmzf-3). [swissprot;acc:q9y2p7]
	218			zinc finger protein 214 (bwscr2 associated zinc-finger protein 1) (baz 1). [swissprot;acc:q9ul59]
	219			zinc finger protein 165 (ld65). [swissprot;acc:p49910]

Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.