Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2168 to 2217 of 3228 in total
Value Type: Measured
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1
\def\wcA{0.16666666666667\textwidth} \def\wcB{0.16666666666667\textwidth} \def\wcC{0.16666666666667\textwidth} \def\wcD{0.16666666666667\textwidth} \def\wcE{0.16666666666667\textwidth} \begin{longtable}{|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent 2168\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent hydroxyacid oxidase 1 (ec 1.1.3.15) (haox1) (glycolate oxidase) (gox). [source:swissprot;acc:q9ujm8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4561.75\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4799.24\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05206\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2169\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l5. [source:swissprot;acc:p46777]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3639.65\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3459.64\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05203\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2170\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent exonuclease 1 isoform b; rad2 nuclease family member, homolog of s. cerevisiae exonuclease 1. [source:refseq;acc:nm\_006027]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5825.61\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6126.74\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.05169\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2171\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent phd finger protein 9. [source:refseq;acc:nm\_018062]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2172\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent small optic lobes homolog; small optic lobes, drosophila, homolog of. [source:refseq;acc:nm\_005632]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2173\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent epithelial-cadherin precursor (e-cadherin) (uvomorulin) (cadherin-1) (cam 120/80). [source:swissprot;acc:p12830]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3641.4\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3462.96\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05153\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2174\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent c367g8.3 (novel protein similar to rpl23a (60s ribosomal protein l23a)) (60s ribosomal protein l23a like). [source:sptrembl;acc:q9br02]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3641.45\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3463.02\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05152\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2175\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l23a. [source:swissprot;acc:p29316]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3642.13\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3463.88\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05146\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2176\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent potassium voltage-gated channel subfamily a member 2 (potassium channel kv1.2) (rbk2) (hbk5) (ngk1) (mk2) (hukiv). [source:swissprot;acc:p16389]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6674.58\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7015.93\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05114\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2177\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent elav-like protein 3 (hu-antigen c) (huc) (paraneoplastic cerebellar degeneration-associated antigen) (paraneoplastic limbic encephalitis antigen 21). [source:swissprot;acc:q14576]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5887.43\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6187.82\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05102\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2178\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent elav-like protein 1 (hu-antigen r) (hur). [source:swissprot;acc:q15717]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5893.23\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6193.33\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05092\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2179\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent elav-like protein 4 (paraneoplastic encephalomyelitis antigen hud) (hu-antigen d). [source:swissprot;acc:p26378]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5896.51\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6196.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05089\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2180\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent elav-like protein 2 (hu-antigen b) (hub) (elav-like neuronal protein 1) (nervous system-specific rna binding protein hel-n1). [source:swissprot;acc:q12926]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5900.25\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6200.24\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05084\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2181\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent triosephosphate isomerase (ec 5.3.1.1) (tim). [source:swissprot;acc:p00938]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4915.05\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5164.75\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0508\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2182\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent cug triplet repeat rna-binding protein 1 (cug-bp1) (rna-binding protein brunol-2) (deadenylation factor cug-bp) (50 kda nuclear polyadenylated rna-binding protein) (eden-bp). [source:swissprot;acc:q92879]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5875.13\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6173.41\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.05077\vspace{3pt}}}\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2183\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent cug triplet repeat, rna binding protein 2; elav-type rna-binding protein; cug triplet repeat,rna-binding protein 2; cug triplet repeat, rna-binding protein 2; neuroblastoma apoptosis-related rna-binding protein. [source:refseq;acc:nm\_006561]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5875.11\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6173.39\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2184\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent rna-binding region containing protein 1 (hsrnaseb) (ssdna binding protein seb4) (cll-associated antigen kw-5). [source:swissprot;acc:q9h0z9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5838.01\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6132.35\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05042\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2185\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l12. [source:swissprot;acc:p30050]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3586.32\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3414.42\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.05035\vspace{3pt}}}\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2186\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l12 like protein. [source:sptrembl;acc:o60886]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3586.3\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3414.4\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2187\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dj999l4.1 (novel protein similar to ribosomal protein l12 (rpl12)). [source:sptrembl;acc:q9nq02]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3586.31\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3414.41\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2188\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent potassium voltage-gated channel subfamily a member 1 (potassium channel kv1.1) (huki) (hbk1). [source:swissprot;acc:q09470]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6682.7\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7018.29\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05022\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2189\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent clathrin heavy chain 1 (clh-17). [source:swissprot;acc:q00610]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5285.03\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5033.55\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04996\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2190\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent phosducin-like protein (phlp). [source:swissprot;acc:q13371]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5285.38\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5034.86\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.04976\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2191\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent replication protein a 70 kda dna-binding subunit (rp-a) (rf-a) (replication factor-a protein 1) (single-stranded dna-binding protein). [source:swissprot;acc:p27694]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2192\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent replication protein a 32 kda subunit (rp-a) (rf-a) (replication factor-a protein 2). [source:swissprot;acc:p15927]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2193\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent phosducin (phd) (33 kda phototransducing protein) (meka protein). [source:swissprot;acc:p20941]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2194\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dna repair protein rad52 homolog. [source:swissprot;acc:p43351]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2195\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ribose 5-phosphate isomerase (ec 5.3.1.6) (phosphoriboisomerase). [source:swissprot;acc:p49247]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6197.11\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6504.93\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04967\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2196\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent potassium voltage-gated channel subfamily a member 4 (potassium channel kv1.4) (hk1) (hpcn2) (hbk4) (hukii). [source:swissprot;acc:p22459]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6688.64\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7020.02\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04954\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2197\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent clathrin heavy chain 2 (clh-22). [source:swissprot;acc:p53675]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5285.79\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5036.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04952\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2198\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent complement component 1, q subcomponent binding protein, mitochondrial precursor (glycoprotein gc1qbp) (gc1q-r protein) (hyaluronan-binding protein 1) (p32) (p33). [source:swissprot;acc:q07021]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6344.31\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6657.98\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.04944\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2199\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent sirtuin 1; sir2-like 1; sirtuin type 1; sir2alpha; sirtuin silent mating type information regulation 2 homolog 1 (s. cerevisiae). [source:refseq;acc:nm\_012238]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2200\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent rna-binding protein 10 (rna binding motif protein 10) (dxs8237e). [source:swissprot;acc:p98175]\vspace{3pt}}&\multirow{8}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5076.73\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5326.29\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.04916\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2201\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent cytochrome c. [source:swissprot;acc:p00001]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2202\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent heparan sulfate 6-o-sulfotransferase 2. [source:refseq;acc:nm\_147174]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2203\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent heparan sulfate 6-o-sulfotransferase; heparan-sulfate 6-sulfotransferase. [source:refseq;acc:nm\_004807]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2204\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent fatty acid hydroxylase domain containing 1. [source:refseq;acc:nm\_024306]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2205\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ww domain binding protein 11; npw38-binding protein npwbp; sh3 domain-binding protein snp70. [source:refseq;acc:nm\_016312]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2206\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent elac homolog 2; putative prostate cancer susceptibility protein; elac (e. coli) homolog 2. [source:refseq;acc:nm\_018127]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2207\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent rna-binding protein 5 (rna binding motif protein 5) (putative tumor suppressor luca15) (g15 protein). [source:swissprot;acc:p52756]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2208\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent visinin-like protein 3 (vilip-3) (calcium-binding protein bdr-1) (hlp2) (hippocalcin-like protein 1). [source:swissprot;acc:p37235]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5259.97\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5518.26\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0491\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2209\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent neuron specific calcium-binding protein hippocalcin (p23k) (calcium- binding protein bdr-2). [source:swissprot;acc:p32076]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5259.1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5517.22\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.04908\vspace{3pt}}}\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2210\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent neurocalcin delta. [source:swissprot;acc:p29554]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5258.96\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5517.06\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2211\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 40s ribosomal protein s20. [source:swissprot;acc:p17075]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3590.56\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3422.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04907\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2212\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent thioredoxin domain containing; thioredoxin-related transmembrane protein; thioredoxin domain-containing. [source:refseq;acc:nm\_030755]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6087.68\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6385.84\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04898\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2213\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent proteasome subunit beta type 1 (ec 3.4.25.1) (proteasome component c5) (macropain subunit c5) (multicatalytic endopeptidase complex subunit c5) (proteasome gamma chain). [source:swissprot;acc:p20618]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6642.32\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6967.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04897\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2214\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent chromosome 11 open reading frame2; chromosome 11 open reading frame2. [source:refseq;acc:nm\_013265]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5910.12\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6199.28\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.04893\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2215\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent kinesin-like protein kif13a (kinesin-like protein rbkin). [source:swissprot;acc:q9h1h9]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2216\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent conserved oligomeric golgi complex component 2 (low density lipoprotein receptor defect c-complementing protein). [source:swissprot;acc:q14746]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2217\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent kinesin-like protein kif13b (kinesin-like protein gakin). [source:swissprot;acc:q9nqt8]\vspace{3pt}}&&&\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/