Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX
Showing element 2080 to 2129 of 8289 in total
Value Type: Measured
Network Comparison Type: Divided
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1040\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
rna-binding region containing protein 2 (hepatocellular carcinoma protein 1) (splicing factor hcc1). [source:swissprot;acc:q14498]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5421.93\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5926.08\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09298\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1041\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cerebral cell adhesion molecule. [source:refseq;acc:nm\_016174]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8151.65\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8459.61\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03778\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
myb-related protein a (a-myb). [source:swissprot;acc:p10243]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5419.18\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5922.84\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09294\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1042\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
pyruvate dehydrogenase e1 component alpha subunit, testis-specific form, mitochondrial precursor (ec 1.2.4.1) (pdhe1-a type ii). [source:swissprot;acc:p29803]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8193.63\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8503\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03776\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
similar to lim domain only 7 (fragment). [source:sptrembl;acc:q8n6m2]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
5887.52\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6434.32\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09287\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1043\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
15 kda selenoprotein precursor. [source:swissprot;acc:o60613]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6344.41\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6933.36\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09283\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
guanine nucleotide-binding protein beta subunit-like protein 1 (g protein beta-subunit like protein 1) (wd40 repeat containing protein deleted in vcfs) (wdvcf protein) (fksg1 protein) (dgcrk3). [source:swissprot;acc:q9byb4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8193.38\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8502.66\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03775\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1044\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
mbd2 (methyl-cpg-binding protein)-interacting zinc finger protein. [source:refseq;acc:nm\_015517]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4757.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5198.91\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09279\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vesicle trafficking protein sec22b. [source:refseq;acc:nm\_004892]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
7977.77\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8278.9\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.03775\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1045\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
doublesex and mab-3 related transcription factor 3; testis-specific protein; dmrt-like family a3. [source:refseq;acc:nm\_021240]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
8193.38\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8502.66\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
immature colon carcinoma transcript 1 (digestion substraction 1) (ds- 1). [source:swissprot;acc:q14197]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5364.32\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5862.09\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09279\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1046\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
pyruvate dehydrogenase e1 component alpha subunit, somatic form, mitochondrial precursor (ec 1.2.4.1) (pdhe1-a type i). [source:swissprot;acc:p08559]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8193.14\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8502.35\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03774\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
skeletal muscle tropomodulin (sk-tmod) (tropomodulin 4). [source:swissprot;acc:q9nzq9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4757.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5198.91\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09279\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1047\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
krueppel-like factor 12 (transcriptional repressor ap-2rep) (hspc122). [source:swissprot;acc:q9y4x4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8229.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8540.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03772\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitous tropomodulin (u-tmod) (tropomodulin 3). [source:swissprot;acc:q9nyl9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4757.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5198.91\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09279\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1048\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
adapter-related protein complex 1 beta 1 subunit (beta-adaptin 1) (adaptor protein complex ap-1 beta-1 subunit) (golgi adaptor ha1/ap1 adaptin beta subunit) (clathrin assembly protein complex 1 beta large chain). [source:swissprot;acc:q10567]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7724.96\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8016.23\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03771\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tropomodulin 1 (erythrocyte tropomodulin) (e-tmod). [source:swissprot;acc:p28289]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4757.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5198.91\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09279\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1049\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
anaphase-promoting complex subunit 10; anaphase-promoting complex 10. [source:refseq;acc:nm\_014885]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7454.43\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7735.48\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0377\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sorting nexin 9 (sh3 and px domain-containing protein 1) (sdp1 protein). [source:swissprot;acc:q9y5x1]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4757.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5198.91\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09279\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1050\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
glutamine synthetase (ec 6.3.1.2) (glutamate--ammonia ligase). [source:swissprot;acc:p15104]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7874.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8171.49\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0377\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
neuronal tropomodulin (n-tmod) (tropomodulin 2). [source:swissprot;acc:q9nzr1]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4757.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5198.91\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09279\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1051\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
17 beta-hydroxysteroid dehydrogenase. [source:sptrembl;acc:q13034]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8189.31\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8498.04\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0377\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein dlx-2. [source:swissprot;acc:q07687]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4757.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5198.91\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09279\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1052\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
estradiol 17 beta-dehydrogenase 1 (ec 1.1.1.62) (17-beta-hsd 1) (placental 17-beta-hydroxysteroid dehydrogenase) (20 alpha- hydroxysteroid dehydrogenase) (20-alpha-hsd) (e2dh). [source:swissprot;acc:p14061]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8189.19\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8497.86\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03769\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein dlx-5. [source:swissprot;acc:p56178]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
4757.46\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
5198.91\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.09279\vspace{3pt}}}\\\cline{1-2}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1053\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
fetal brain protein 239 (239fb). [source:swissprot;acc:q15777]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
krueppel-like factor 8 (zinc finger protein 741) (basic kruppel-like factor 3). [source:swissprot;acc:o95600]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8228.43\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8538.56\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03769\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1054\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein dlx-3. [source:swissprot;acc:o60479]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4757.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5198.91\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09279\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
speckle-type poz protein. [source:swissprot;acc:o43791]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8125.84\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8432\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03768\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1055\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
activated p21cdc42hs kinase. [source:refseq;acc:nm\_005781]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4757.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5198.91\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09279\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
kruppel-like factor 3 (basic kruppel-like factor) (caccc-box binding protein bklf) (tef-2). [source:swissprot;acc:p57682]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8228.22\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8538.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03768\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1056\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
mitogen-activated protein kinase kinase kinase 7 interacting protein 2 isoform 1; tak1-binding protein 2. [source:refseq;acc:nm\_015093]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4757.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5198.91\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09279\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor sp4 (spr-1). [source:swissprot;acc:q02446]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8227.84\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8537.85\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03768\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1057\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
tata element modulatory factor (tmf). [source:swissprot;acc:p82094]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5412.23\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5913.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0926\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin carboxyl-terminal hydrolase 16 (ec 3.1.2.15) (ubiquitin thiolesterase 16) (ubiquitin-specific processing protease 16) (deubiquitinating enzyme 16) (ubiquitin processing protease ubp-m). [source:swissprot;acc:q9y5t5]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
8114.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8420.07\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.03766\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1058\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
retinol dehydrogenase 8 (all-trans); photoreceptor outer segment all-trans retinol dehydrogenase. [source:refseq;acc:nm\_015725]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
8188.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8496.97\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
scy1-like 1; telomerase regulation-associated protein; ht019 protein; telomerase regulation-associated protein; n-terminal kinase-like protein; teratoma-associated tyrosine kinase; n-terminal kinase-like. [source:refseq;acc:nm\_020680]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5412.23\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5913.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0926\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1059\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
myosin va (myosin 5a) (dilute myosin heavy chain, non-muscle) (myosin heavy chain 12) (myoxin). [source:swissprot;acc:q9y4i1]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8238.43\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8548.43\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03763\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tubulin-specific chaperone c (tubulin-folding cofactor c) (cfc). [source:swissprot;acc:q15814]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5719.01\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
6248.6\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.0926\vspace{3pt}}}\\\cline{1-2}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1060\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
putative acyl-coa thioester hydrolase cgi-16 (ec 3.1.2.-). [source:swissprot;acc:q9y305]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sipl protein. [source:refseq;acc:nm\_018269]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
8280.28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8591.71\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03761\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1061\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
nicotinamide nucleotide adenylyltransferase 3; pyridine nucleotide adenylyltransferase 3. [source:refseq;acc:nm\_178177]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
7734.37\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8024.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03755\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear pore complex protein nup98 (nucleoporin nup98) (98 kda nucleoporin). [source:swissprot;acc:p52948]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5412.23\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
5913.4\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.0926\vspace{3pt}}}\\\cline{1-2}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1062\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ammecr1 protein. [source:refseq;acc:nm\_015365]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
inositol polyphosphate-5-phosphatase; phosphatidylinositol polyphosphate 5-phosphatase type iv; phosphatidylinositol (4,5) bisphosphate 5-phosphatase. [source:refseq;acc:nm\_019892]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
7916.86\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8214.11\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03755\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1063\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
adaptor-related protein complex 1, mu 2 subunit (mu-adaptin 2) (adaptor protein complex ap-1 mu-2 subunit) (golgi adaptor ha1/ap1 adaptin mu-2 subunit) (clathrin assembly protein assembly protein complex 1 medium chain 2) (ap-mu chain family member mu1b). [source:swissprot;acc:q9y6q5]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
7793.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8086.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03752\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mrna-associated protein mrnp 41 (rae1 protein homolog). [source:swissprot;acc:p78406]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5412.23\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5913.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0926\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1064\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytoplasmic cysteine conjugate-beta lyase; glutamine-phenylpyruvate aminotransferase. [source:refseq;acc:nm\_004059]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8454.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8771.63\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0375\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dead-box protein. [source:refseq;acc:nm\_018665]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
5719.01\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6248.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0926\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\parbox{\wcA}{\vspace{3pt}\noindent
1065\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna-(apurinic or apyrimidinic site) lyase (ec 4.2.99.18) (ap endonuclease 1) (apex nuclease) (apen) (ref-1 protein). [source:swissprot;acc:p27695]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6393.81\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6984.94\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.09245\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/