Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1730 to 1779 of 25824 in total 
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.125\textwidth}
\def\wcB{0.125\textwidth}
\def\wcC{0.125\textwidth}
\def\wcD{0.125\textwidth}
\def\wcE{0.125\textwidth}
\def\wcF{0.125\textwidth}
\def\wcG{0.125\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{7}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
217\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
human immunodeficiency virus type i enhancer binding protein 3. [source:refseq;acc:nm\_024503]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
46785.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
58383.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11597.5\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin heavy chain, skeletal muscle, perinatal (myhc-perinatal). [source:swissprot;acc:p13535]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
112\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
126\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.125\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
peptidyl-prolyl cis-trans isomerase b precursor (ec 5.2.1.8) (ppiase) (rotamase) (cyclophilin b) (s-cyclophilin) (scylp) (cyp-s1). [source:swissprot;acc:p23284]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
86600.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
65229.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.32763\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein hspc134 (protein cda04). [source:swissprot;acc:q9by43]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
105.205\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
92.2415\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14054\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
proto-oncogene c-crk (p38) (adapter molecule crk). [source:swissprot;acc:p46108]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6417.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7859.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1442.42\vspace{3pt}}\\\cline{2-2}\cline{4-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ral guanine nucleotide dissociation stimulator-like 2 (ralgds-like factor) (ras-associated protein rab2l). [source:swissprot;acc:o15211]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
16071.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
12886.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24714\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
retinal short-chain dehydrogenase/reductase 3. [source:refseq;acc:nm\_016246]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
121.695\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
131.815\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10.12\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
218\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l35. [source:swissprot;acc:p42766]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
242.333\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
266.999\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
24.666\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
hpaii tiny  fragments locus 9c. [source:refseq;acc:nm\_022727]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
46.1476\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
52.5742\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13926\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin heavy chain, skeletal muscle, adult 2 (myosin heavy chain iia) (myhc-iia). [source:swissprot;acc:q9ukx2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
112\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
126\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.125\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
proto-oncogene tyrosine-protein kinase src (ec 2.7.1.112) (p60-src) (c-src). [source:swissprot;acc:p12931]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
6417.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7859.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1442.42\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
t-complex protein 1, gamma subunit (tcp-1-gamma) (cct-gamma). [source:swissprot;acc:p49368]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
107.178\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
117.276\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10.098\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
transforming protein p21/h-ras-1 (c-h-ras). [source:swissprot;acc:p01112]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
16070.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
12886\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24712\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
udp-n-acetylglucosamine--peptide n-acetylglucosaminyltransferase 110 kda subunit (ec 2.4.1.-) (o-glcnac transferase p110 subunit). [source:swissprot;acc:o15294]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
86600.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
65229.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.32763\vspace{3pt}}\\\cline{2-2}\cline{4-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 40 (human immunodeficiency virus type i enhancer- binding protein 1) (hiv-ep1) (major histocompatibility complex binding protein 1) (mbp-1) (positive regulatory domain ii binding factor 1) (prdii-bf1). [source:swissprot;acc:p15822]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
46785.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
58383.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11597.5\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
219\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s15 (rig protein). [source:swissprot;acc:p11174]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
242.339\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
266.986\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
24.647\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome c oxidase subunit iv isoform 1, mitochondrial precursor (ec 1.9.3.1) (cox iv-1) (cytochrome c oxidase polypeptide iv). [source:swissprot;acc:p13073]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
86600.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
65229.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.32763\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
histone acetyltransferase type b catalytic subunit (ec 2.3.1.48). [source:swissprot;acc:o14929]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
44.963\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
55.0576\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10.0946\vspace{3pt}}\\\cline{2-2}\cline{4-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
histone acetyltransferase type b subunit 2 (retinoblastoma binding protein p46) (retinoblastoma-binding protein 7) (rbbp-7). [source:swissprot;acc:q16576]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
52.7146\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
60.0088\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13837\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
human immunodeficiency virus type i enhancer-binding protein 2 (hiv-ep2). [source:swissprot;acc:p31629]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
46785.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
58383.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11597.5\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin heavy chain, fast skeletal muscle, embryonic (muscle embryonic myosin heavy chain) (smhce). [source:swissprot;acc:p11055]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
112\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
126\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.125\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
transforming protein n-ras. [source:swissprot;acc:p01111]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
16069.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
12885.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24711\vspace{3pt}}\\\cline{2-2}\cline{4-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
tyrosine-protein kinase hck (ec 2.7.1.112) (p59-hck/p60-hck) (hemopoietic cell kinase). [source:swissprot;acc:p08631]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
6417.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7859.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1442.42\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
220\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
brain protein 44. [source:swissprot;acc:o95563]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
113.374\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
123.463\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10.089\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
crk-like protein. [source:swissprot;acc:p46109]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
6417.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7859.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1442.42\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome c oxidase subunit iv isoform 2, mitochondrial precursor (ec 1.9.3.1) (cox iv-2). [source:swissprot;acc:q96kj9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
86600.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
65229.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.32763\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
mannosyl-oligosaccharide 1,2-alpha-mannosidase ib (ec 3.2.1.113) (processing alpha-1,2-mannosidase ib) (alpha-1,2-mannosidase ib) (mannosidase alpha class 1a member 2). [source:swissprot;acc:o60476]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
41482.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
33356.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24361\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
metastasis-associated protein mta1. [source:swissprot;acc:q13330]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
52.7557\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
60.035\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13798\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial ribosomal protein l2. [source:refseq;acc:nm\_015950]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.339\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
266.986\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
24.647\vspace{3pt}}\\\cline{2-2}\cline{4-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin heavy chain, skeletal muscle, adult 1 (myosin heavy chain iix/d) (myhc-iix/d). [source:swissprot;acc:p12882]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
112\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
126\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.125\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription initiation factor tfiid 55 kda subunit (tafii-55) (tafii55). [source:swissprot;acc:q15545]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
57808.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
46630.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11178.6\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
221\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytohesin 1 (sec7 homolog b2-1). [source:swissprot;acc:q15438]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
41482.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
33356.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24361\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
hypoxanthine-guanine phosphoribosyltransferase (ec 2.4.2.8) (hgprt) (hgprtase). [source:swissprot;acc:p00492]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
70739\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
93908.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.32754\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin heavy chain, cardiac muscle beta isoform (myhc-beta). [source:swissprot;acc:p12883]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
112\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
126\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.125\vspace{3pt}}\\\cline{2-2}\cline{4-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein translation factor sui1 homolog gc20. [source:swissprot;acc:o60739]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.627\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
267.151\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
24.524\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
proto-oncogene tyrosine-protein kinase fyn (ec 2.7.1.112) (p59-fyn) (syn) (slk). [source:swissprot;acc:p06241]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
6417.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7859.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1442.42\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
septin 7 (cdc10 protein homolog). [source:swissprot;acc:q16181]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
113.374\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
123.463\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10.089\vspace{3pt}}\\\cline{2-2}\cline{4-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
spliceosomal u5 snrnp-specific 15 kda protein (dim1 protein homolog) (thioredoxin-like u5 snrnp protein u5-15kd). [source:swissprot;acc:o14834]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
56.9506\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
64.7888\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13763\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
tata box binding protein-associated factor, rna polymerase ii, q; taf7-like rna polymerase ii, tata box binding protein (tbp)-associated factor, 50 kd; tbp-associated factor, rna polymerase ii, q. [source:refseq;acc:nm\_024885]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
57579.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
46497.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11082\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
222\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l14 (cag-isl 7). [source:swissprot;acc:p50914]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
242.153\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
266.673\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
24.52\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
chromatin assembly factor 1 subunit c (caf-1 subunit c) (chromatin assembly factor i p48 subunit) (caf-i 48 kda subunit) (caf-ip48) (retinoblastoma binding protein p48) (retinoblastoma-binding protein 4) (rbbp-4) (msi1 protein homolog). [source:swissprot;acc:q09028]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
52.7936\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
60.0592\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13762\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
cytohesin 2 (arf nucleotide-binding site opener) (arno protein) (arf exchange factor). [source:swissprot;acc:q99418]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
41482.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
33356.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24361\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
dj756n5.1.1 (continues in em:al133324 as dj1161h23.3) (fragment). [source:sptrembl;acc:q9h430]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
112\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
126\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.125\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
lag1 longevity assurance homolog 2 isoform 1; l3 pigment; tumor metastasis-suppressor. [source:refseq;acc:nm\_022075]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
61.6639\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71.7355\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10.0716\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
metalloprotease 1; metalloprotease 1 (pitrilysin family). [source:refseq;acc:nm\_014889]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
29570.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18601.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10968.9\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
proto-oncogene tyrosine-protein kinase fgr (ec 2.7.1.112) (p55-fgr) (c-fgr). [source:swissprot;acc:p09769]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
6417.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7859.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1442.42\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
signal transducing adaptor molecule 2; stam-like protein containing sh3 and itam domains 2. [source:refseq;acc:nm\_005843]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
86281\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
65058.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.32621\vspace{3pt}}\\\cline{1-2}\cline{4-7}
\multirow{3}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
223\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
beta-1,4 mannosyltransferase. [source:refseq;acc:nm\_019109]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
29567\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
18601.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10965.4\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
cytohesin 4. [source:swissprot;acc:q9uia0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
41482.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
33356.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24361\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
melanoma antigen, family d, 4 isoform 1; mage1 protein; mage-e1 protein; maged4 protein. [source:refseq;acc:nm\_030801]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
137.446\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
120.823\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13758\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/