Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1680 to 1729 of 25824 in total 
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.125\textwidth}
\def\wcB{0.125\textwidth}
\def\wcC{0.125\textwidth}
\def\wcD{0.125\textwidth}
\def\wcE{0.125\textwidth}
\def\wcF{0.125\textwidth}
\def\wcG{0.125\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
210\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
voltage-dependent calcium channel gamma-2 subunit (neuronal voltage- gated calcium channel gamma-2 subunit). [source:swissprot;acc:q9y698]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4068.82\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5082.21\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24906\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
211\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
apobec-1 complementation factor isoform 1; apobec-1 stimulating protein; apo-b rna editing protein. [source:refseq;acc:nm\_014576]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
237.302\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
212.41\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
24.892\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
associated molecule with the sh3 domain of stam (amsh) like protein. [source:refseq;acc:nm\_020799]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
28994.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
17134.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11859.4\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-c5 (hox-3d) (cp11). [source:swissprot;acc:q00444]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
121.695\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
131.815\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10.12\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
luc7-like; sarcoplasmic reticulum protein luc7b1. [source:refseq;acc:nm\_018032]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
4358.13\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5811.49\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1453.36\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
metalloprotease 1; metalloprotease 1 (pitrilysin family). [source:refseq;acc:nm\_014889]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
88.4361\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
77.5112\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14095\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleolysin tia-1 (rna-binding protein tia-1) (p40-tia-1) [contains: p15-tia-1]. [source:swissprot;acc:p31483]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
14668.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
19547\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.3326\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
presenilin 1 (ps-1) (s182 protein). [source:swissprot;acc:p49768]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
285.684\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
252.234\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13261\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
voltage-dependent calcium channel gamma-4 subunit (neuronal voltage- gated calcium channel gamma-4 subunit). [source:swissprot;acc:q9ubn1]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
4068.91\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5082.27\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24905\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
212\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
beta-1,4 mannosyltransferase. [source:refseq;acc:nm\_019109]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
88.4266\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
77.5047\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14092\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
cullin homolog 1 (cul-1). [source:swissprot;acc:q13616]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
285.684\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
252.234\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.13261\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-c6 (hox-3c) (hho.c8) (cp25). [source:swissprot;acc:p09630]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
121.695\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
131.815\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10.12\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
ns1-associated protein 1. [source:refseq;acc:nm\_006372]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
237.302\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
212.41\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
24.892\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleolysin tiar (tia-1 related protein). [source:swissprot;acc:q01085]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
14690.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
19560.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.3315\vspace{3pt}}\\\cline{2-2}\cline{4-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
putative breast adenocarcinoma marker (32kd). [source:refseq;acc:nm\_014453]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
28994.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
17134.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11859.4\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor iiib 90 kda subunit (tfiiib90) (htfiiib90) (b- related factor 1) (hbrf) (tata box-binding protein-associated factor, rna polymerase iii, subunit 2) (taf3b2). [source:swissprot;acc:q92994]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4446.72\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5553.79\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24896\vspace{3pt}}\\\cline{2-2}\cline{4-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
wiskott-aldrich syndrome protein (wasp). [source:swissprot;acc:p42768]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6416.68\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7865.15\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1448.47\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
213\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
associated molecule with the sh3 domain of stam (amsh) like protein. [source:refseq;acc:nm\_020799]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
105.205\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
92.2415\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14054\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
associated molecule with the sh3 domain of stam. [source:refseq;acc:nm\_006463]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
28994.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
17134.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11859.4\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
carboxypeptidase b precursor. [source:refseq;acc:nm\_020361]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
7711.38\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6265.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1445.58\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
heterogeneous nuclear ribonucleoprotein r (hnrnp r). [source:swissprot;acc:o43390]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
237.302\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
212.41\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
24.892\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-d4 (hox-4b) (hox-5.1) (hho.c13). [source:swissprot;acc:p09016]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
121.695\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
131.815\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10.12\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleolar protein family a, member 1; gar1 protein. [source:refseq;acc:nm\_018983]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
4446.72\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5553.79\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24896\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
pallidin; pallid (mouse) homolog, pallidin. [source:refseq;acc:nm\_012388]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
210.693\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
186.95\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.127\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
signal transducing adaptor molecule 1; signal transducing adaptor molecule. [source:refseq;acc:nm\_003473]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
86861.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
65369.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.32877\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
214\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-b5 (hox-2a) (hho.c10) (hu-1). [source:swissprot;acc:p09067]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
121.695\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
131.815\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10.12\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
lag1 longevity assurance homolog 2 isoform 1; l3 pigment; tumor metastasis-suppressor. [source:refseq;acc:nm\_022075]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
191.644\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
170.192\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.12605\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
mast cell carboxypeptidase a precursor (ec 3.4.17.1) (mc-cpa) (carboxypeptidase a3). [source:swissprot;acc:p15088]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
7711.36\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6265.79\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1445.57\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial ribosomal protein l4 isoform a. [source:refseq;acc:nm\_015956]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
241.282\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
266.12\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
24.838\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
neuroendocrine differentiation factor; comparative gene identification transcript 149. [source:refseq;acc:nm\_016079]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
28994.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
17134.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11859.4\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
putative breast adenocarcinoma marker (32kd). [source:refseq;acc:nm\_014453]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
105.205\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
92.2415\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14054\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase (ec 2.1.1.61). [source:swissprot;acc:o75648]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
52591.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
69845.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.32807\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
voltage-dependent calcium channel gamma-5 subunit (neuronal voltage- gated calcium channel gamma-5 subunit). [source:swissprot;acc:q9uf02]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
4074.83\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5086.49\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24827\vspace{3pt}}\\\cline{1-3}\cline{5-7}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
215\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
associated molecule with the sh3 domain of stam. [source:refseq;acc:nm\_006463]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
105.205\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
92.2415\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14054\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 4 gamma (eif-4-gamma) (eif- 4g) (eif4g) (p220). [source:swissprot;acc:q04637]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
237.292\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
212.457\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
24.835\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-a5 (hox-1c). [source:swissprot;acc:p20719]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
121.695\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
131.815\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10.12\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin heavy chain, cardiac muscle alpha isoform (myhc-alpha). [source:swissprot;acc:p13533]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
112\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
126\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.125\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
plasma carboxypeptidase b2 isoform a preproprotein; carboxypeptidase u; thrombin-activatable fibrinolysis inhibitor; carboxypeptidase b-like protein; thrombin-activable fibrinolysis inhibitor. [source:refseq;acc:nm\_001872]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
7711.31\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6265.76\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1445.55\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein hspc134 (protein cda04). [source:swissprot;acc:q9by43]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
28994.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
17134.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11859.4\vspace{3pt}}\\\cline{2-2}\cline{4-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein kinase c, eta type (ec 2.7.1.-) (npkc-eta) (pkc-l). [source:swissprot;acc:p24723]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
86609.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
65234.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.32766\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
transforming protein p21a (k-ras 2a) (ki-ras) (c-k-ras). [source:swissprot;acc:p01116]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
16074\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
12888.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24717\vspace{3pt}}\\\cline{1-2}\cline{4-7}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
216\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
enoyl-coa hydratase, mitochondrial precursor (ec 4.2.1.17) (short chain enoyl-coa hydratase) (sceh) (enoyl-coa hydratase 1). [source:swissprot;acc:p30084]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
10067.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
11511\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1443.1\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-a4 (hox-1d) (hox-1.4). [source:swissprot;acc:q00056]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
121.695\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
131.815\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10.12\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
j kappa-recombination signal binding protein (rbp-j kappa). [source:swissprot;acc:q06330]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
46785.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
58383.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11597.5\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
leucine-rich repeat protein shoc-2 (ras-binding protein sur-8). [source:swissprot;acc:q9uq13]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
16071.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
12886.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24714\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin heavy chain, skeletal muscle, fetal (myosin heavy chain iib) (myhc-iib). [source:swissprot;acc:q9y623]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
112\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
126\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.125\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
neuroendocrine differentiation factor; comparative gene identification transcript 149. [source:refseq;acc:nm\_016079]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
105.205\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
92.2415\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.14054\vspace{3pt}}\\\cline{2-3}\cline{5-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein kinase c, epsilon type (ec 2.7.1.-) (npkc-epsilon). [source:swissprot;acc:q02156]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
86600.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
65229.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.32763\vspace{3pt}}\\\cline{2-7}
&\parbox{\wcB}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein sm d2 (snrnp core protein d2) (sm-d2). [source:swissprot;acc:p43330]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
226.471\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
201.769\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
24.702\vspace{3pt}}\\\cline{1-2}\cline{5-7}
\parbox{\wcA}{\vspace{3pt}\noindent
217\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l26. [source:swissprot;acc:q02877]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
242.326\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
267.008\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
24.682\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/