Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1518 to 1567 of 3228 in total
Value Type: Measured
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1
\def\wcA{0.16666666666667\textwidth} \def\wcB{0.16666666666667\textwidth} \def\wcC{0.16666666666667\textwidth} \def\wcD{0.16666666666667\textwidth} \def\wcE{0.16666666666667\textwidth} \begin{longtable}{|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent 1518\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent anaphase-promoting complex subunit 2; anaphase-promoting complex 2. [source:refseq;acc:nm\_013366]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 10341.2\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 9630.35\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07381\vspace{3pt}}}\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1519\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent gdp-mannose pyrophosphorylase b isoform 1; mannose-1-phosphate guanylyltransferase; amphoterin induced gene 3. [source:refseq;acc:nm\_013334]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5283.8\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5673.81\vspace{3pt}}}&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1520\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent gdp-mannose pyrophosphorylase a; mannose-1-phosphate guanylyltransferase (gdp). [source:refseq;acc:nm\_013335]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1521\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 26s protease regulatory subunit 4 (p26s4). [source:swissprot;acc:q03527]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5938.56\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6376.76\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07379\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1522\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent glycerol kinase, testis specific 1 (ec 2.7.1.30) (atp:glycerol 3- phosphotransferase) (glycerokinase) (gk). [source:swissprot;acc:q14409]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6137.24\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6589.72\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07373\vspace{3pt}}}\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1523\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent glycerol kinase (ec 2.7.1.30) (atp:glycerol 3-phosphotransferase) (glycerokinase) (gk). [source:swissprot;acc:p32189]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6137.09\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6589.57\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1524\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent glycerol kinase, testis specific 2 (ec 2.7.1.30) (atp:glycerol 3- phosphotransferase) (glycerokinase) (gk). [source:swissprot;acc:q14410]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6137.53\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6590.01\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07372\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1525\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent tensin. [source:refseq;acc:nm\_022648]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5871.89\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6303.56\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07351\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1526\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent calreticulin precursor (crp55) (calregulin) (hacbp) (erp60). [source:swissprot;acc:p27797]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5369.1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5763.72\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0735\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1527\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 26s protease regulatory subunit 6a (tat-binding protein 1) (tbp-1) (proteasome subunit p50). [source:swissprot;acc:p17980]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5926.76\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6362.33\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07349\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1528\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent c1 domain-containing phosphatase and tensin-like protein isoform 2; putative protein tyrosine phosphatase; c1 domain-containing phosphatase and tensin-like protein; tensin 2. [source:refseq;acc:nm\_015319]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5869.97\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6301.24\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07347\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1529\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dna fragmentation factor 40 kda subunit (ec 3.-.-.-) (dff-40) (caspase-activated deoxyribonuclease) (caspase-activated dnase) (cad) (caspase-activated nuclease) (cpan). [source:swissprot;acc:o76075]\vspace{3pt}}&\multirow{8}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5916.05\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6350.53\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07344\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1530\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adamts-9 precursor (ec 3.4.24.-) (a disintegrin and metalloproteinase with thrombospondin motifs 9) (adam-ts 9) (adam-ts9). [source:swissprot;acc:q9p2n4]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1531\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dna fragmentation factor alpha subunit (dna fragmentation factor 45 kda subunit) (dff-45) (inhibitor of cad) (icad). [source:swissprot;acc:o00273]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1532\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ankyrin 3 (ank-3) (ankyrin g). [source:swissprot;acc:q12955]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1533\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ankyrin 2 (brain ankyrin) (ankyrin b) (ankyrin, nonerythroid). [source:swissprot;acc:q01484]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1534\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adp-ribosylation factor-like protein 3. [source:swissprot;acc:p36405]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1535\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent unc-119 protein homolog (retinal protein 4) (hrg4). [source:swissprot;acc:q13432]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1536\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 26s proteasome non-atpase regulatory subunit 8 (26s proteasome regulatory subunit s14) (p31). [source:swissprot;acc:p48556]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1537\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent evolutionarily conserved signaling intermediate in toll pathway; ecsit. [source:refseq;acc:nm\_016581]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6184.27\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6637.44\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07328\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1538\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent tumor endothelial marker 6; thyroid specific ptb domain protein; tensin 3. [source:refseq;acc:nm\_022748]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5870.72\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6300.83\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07326\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1539\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 26s protease regulatory subunit 7 (mss1 protein). [source:swissprot;acc:p35998]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5783.97\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6207.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07322\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1540\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent mms19-like (met18 homolog, s. cerevisiae); homolog of yeast mms19; mms19 (met18 s. cerevisiae)-like. [source:refseq;acc:nm\_022362]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6360.13\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6825.36\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07315\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1541\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adenylyl cyclase-associated protein 1 (cap 1). [source:swissprot;acc:q01518]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5989.3\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6427.17\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07311\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1542\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent inositol polyphosphate multikinase. [source:refseq;acc:nm\_152230]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5466\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5865.33\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07306\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1543\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent afg3-like protein 2 (ec 3.4.24.-) (paraplegin-like protein). [source:swissprot;acc:q9y4w6]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1544\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent alpha-(1,6)-fucosyltransferase (ec 2.4.1.68) (glycoprotein 6-alpha-l- fucosyltransferase) (gdp-fucose--glycoprotein fucosyltransferase) (gdp-l-fuc:n-acetyl-beta-d-glucosaminide alpha1,6-fucosyltransferase) (alpha1-6fuct) (fucosyltransferase 8). [source:swissprot;acc:q9byc5]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1545\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent aminomethyltransferase, mitochondrial precursor (ec 2.1.2.10) (glycine cleavage system t protein) (gcvt). [source:swissprot;acc:p48728]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5945.96\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6380.28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07304\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1546\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 26s proteasome non-atpase regulatory subunit 3 (26s proteasome regulatory subunit s3) (proteasome subunit p58). [source:swissprot;acc:o43242]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5819.39\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6244.37\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07303\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1547\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent cytidine deaminase (ec 3.5.4.5) (cytidine aminohydrolase). [source:swissprot;acc:p32320]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5397.21\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5790.45\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07286\vspace{3pt}}}\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1548\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l28. [source:swissprot;acc:p46779]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5987.29\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6423.52\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1549\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent glucose-6-phosphate 1-dehydrogenase (ec 1.1.1.49) (g6pd). [source:swissprot;acc:p11413]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6025.86\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6464.16\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07274\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1550\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dna-repair protein xrcc3 (x-ray repair cross-complementing protein 3). [source:swissprot;acc:o43542]\vspace{3pt}}&&&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1551\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent cleavage and polyadenylation specific factor 6, 68 kd subunit; pre-mrna cleavage factor im (68kd); cleavage and polyadenylation specific factor 6, 68kd subunit; pre-mrna cleavage factor i, 68kd subunit. [source:refseq;acc:nm\_007007]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5732.83\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6149.86\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1552\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent atp-dependent dna helicase q5 (recq protein-like 5) (recq5). [source:swissprot;acc:o94762]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6025.86\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6464.16\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1553\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent secreted modular calcium-binding protein 1. [source:refseq;acc:nm\_022137]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5875.75\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6302.76\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07267\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1554\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent prefoldin subunit 1. [source:swissprot;acc:o60925]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1555\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent secreted modular calcium-binding protein 2; smooth muscle associated protein 2. [source:refseq;acc:nm\_022138]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1556\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent choline dehydrogenase. [source:refseq;acc:nm\_018397]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1557\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent vacuolar protein sorting 18 (hvps18). [source:swissprot;acc:q9p253]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6018.7\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6455.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07261\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1558\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent vacuolar protein sorting 33b (hvps33b). [source:swissprot;acc:q9h267]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6048.57\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6487.65\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07259\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1559\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent vacuolar protein sorting 11 (hvps11) (pp3476). [source:swissprot;acc:q9h270]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 1560\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent vacuolar protein sorting 33a (hvps33a). [source:swissprot;acc:q96ax1]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1561\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent vacuolar protein sorting 16 (hvps16). [source:swissprot;acc:q9h269]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6078.43\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6519.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07258\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1562\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adenylyl cyclase-associated protein 2 (cap 2). [source:swissprot;acc:p40123]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5984.88\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6419.11\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07255\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1563\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent proteasome subunit beta type 6 precursor (ec 3.4.25.1) (proteasome delta chain) (macropain delta chain) (multicatalytic endopeptidase complex delta chain) (proteasome subunit y). [source:swissprot;acc:p28072]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6221.35\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6672.51\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.07252\vspace{3pt}}}\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 1564\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent proteasome subunit beta type 9 precursor (ec 3.4.25.1) (proteasome chain 7) (macropain chain 7) (multicatalytic endopeptidase complex chain 7) (ring12 protein) (low molecular mass protein 2). [source:swissprot;acc:p28065]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6257.62\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6711.4\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1565\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent proteasome subunit alpha type 2 (ec 3.4.25.1) (proteasome component c3) (macropain subunit c3) (multicatalytic endopeptidase complex subunit c3). [source:swissprot;acc:p25787]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6343.76\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6803.44\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07246\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1566\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent protein phosphatase 1, regulatory (inhibitor) subunit 12b isoform a; myosin phosphatase regulatory subunit; myosin phosphatase, target subunit 2. [source:refseq;acc:nm\_002481]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5846.67\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6269.41\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0723\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 1567\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 26s protease regulatory subunit 6b (mip224) (mb67 interacting protein) (tat-binding protein-7) (tbp-7). [source:swissprot;acc:p43686]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5822.25\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6242.94\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07226\vspace{3pt}}\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/