Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Value Type description Interaction Map Rank Network Comparison Type Gene Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 732 to 781 of 3228 in total
Value Type: Measured
Interaction Map: High confidence
Network Comparison Type: Divided
Filtered: 1
\def\wcA{0.16666666666667\textwidth} \def\wcB{0.16666666666667\textwidth} \def\wcC{0.16666666666667\textwidth} \def\wcD{0.16666666666667\textwidth} \def\wcE{0.16666666666667\textwidth} \begin{longtable}{|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent daz associated protein 1 isoform b; deleted in azoospermia associated protein 1. [source:refseq;acc:nm\_018959]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1239\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5654.53\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6132.76\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.08457\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent db83 protein. [source:swissprot;acc:p57088]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 1153.5\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 339.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 3.39764\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dc11 protein. [source:refseq;acc:nm\_020186]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1908\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6858.84\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7287.27\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06246\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dc12 protein. [source:refseq;acc:nm\_020187]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2774\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dead (asp-glu-ala-asp) box polypeptide 31 isoform 1; dead/dexh helicase ddx31. [source:refseq;acc:nm\_022779]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 431\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3849.94\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4431.36\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.15102\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dead (asp-glu-ala-asp) box polypeptide 39 isoform 1; nuclear rna helicase, decd variant of dead box family. [source:refseq;acc:nm\_005804]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 777\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5874.74\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6533.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.11211\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dead (asp-glu-ala-asp) box polypeptide 47; hqp0256 protein. [source:refseq;acc:nm\_016355]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2284\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5783.73\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6048.91\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04585\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dead-box protein 4 (vasa homolog). [source:swissprot;acc:q9nqi0]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 990\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5147.9\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5641.25\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.09584\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dead-box protein abstrakt homolog. [source:swissprot;acc:q9ujv9]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2033\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6101.12\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6449.87\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05716\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dead-box protein. [source:refseq;acc:nm\_018665]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1064\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5719.01\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6248.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0926\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dead/h (asp-glu-ala-asp/his) box polypeptide 11; dead/h box-11 (chl1-related helicase gene-1); yeast chl1 homolog. [source:refseq;acc:nm\_030655]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2497\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7002.3\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7192.25\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.02713\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent defender against cell death 1 (dad-1). [source:swissprot;acc:p46966]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2391\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6327.14\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6579.38\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03987\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent deformed epidermal autoregulatory factor 1 homolog (nuclear deaf-1 related transcriptional regulator) (nudr) (suppressin) (zinc finger mynd domain containing protein 5). [source:swissprot;acc:o75398]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2584\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4180.32\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4253.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0175\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dehydrodolichyl diphosphate synthase. [source:refseq;acc:nm\_024887]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1280\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6350.81\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6874.88\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.08252\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent delta 1-pyrroline-5-carboxylate synthetase (p5cs) [includes: glutamate 5-kinase (ec 2.7.2.11) (gamma-glutamyl kinase) (gk); gamma-glutamyl phosphate reductase (gpr) (ec 1.2.1.41) (glutamate-5-semialdehyde dehydrogenase) (glutamyl-gamma-semialdehyde dehydrogenase)]. [source:swissprot;acc:p54886]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1488\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5573.64\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5991.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07499\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent delta(14)-sterol reductase (ec 1.3.1.70) (c-14 sterol reductase) (sterol c14-reductase) (delta14-sr) (transmembrane 7 superfamily member 2) (another new gene 1) (putative sterol reductase sr-1). [source:swissprot;acc:o76062]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2309\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6960.96\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7273.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04493\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent delta-aminolevulinic acid dehydratase (ec 4.2.1.24) (porphobilinogen synthase) (aladh). [source:swissprot;acc:p13716]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1158\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5489.18\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5972.09\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.08797\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent delta-interacting protein a (hepatitis delta antigen interacting protein a). [source:swissprot;acc:q15834]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1410\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6274.62\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6760.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07748\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent delta-sarcoglycan (sg-delta) (35 kda dystrophin-associated glycoprotein) (35dag). [source:swissprot;acc:q92629]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 738\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5768.32\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6434.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.11554\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent delta3,5-delta2,4-dienoyl-coa isomerase, mitochondrial precursor (ec 5.3.3.-). [source:swissprot;acc:q13011]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1019\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5791.82\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6340.86\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0948\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent deltex 2. [source:refseq;acc:nm\_020892]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 54\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 1618.84\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 2651.88\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.63814\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent deltex homolog 1; hdx-1. [source:refseq;acc:nm\_004416]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 55\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 1629.21\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 2662.12\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.63399\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dendritic cell protein. [source:refseq;acc:nm\_006360]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 715\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6593.17\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7364.55\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.117\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent density-regulated protein (drp) (drp1 protein) (smooth muscle cell associated protein-3) (smap-3). [source:swissprot;acc:o43583]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1589\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3600.99\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3360.33\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07162\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent deoxycytidylate deaminase (ec 3.5.4.12) (dcmp deaminase). [source:swissprot;acc:p32321]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2148\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4644.58\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4892.06\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05328\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent deoxyhypusine synthase (ec 2.5.1.46) (dhs). [source:swissprot;acc:p49366]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1493\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6146.36\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6606.21\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07482\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent deoxyribonuclease ii beta isoform 1 precursor; deoxyribonuclease ii beta; endonuclease dlad. [source:refseq;acc:nm\_021233]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 324\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 28136.5\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 33457.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.18912\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial precursor (ec 3.6.1.23) (dutpase) (dutp pyrophosphatase). [source:swissprot;acc:p33316]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 567\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 10264.9\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 9043.51\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.13506\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent destrin (actin-depolymerizing factor) (adf). [source:swissprot;acc:p18282]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1948\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6230.21\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6608.64\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06074\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent developmentally regulated gtp-binding protein 1 (drg 1). [source:swissprot;acc:q9y295]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2762\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent developmentally regulated gtp-binding protein 2 (drg 2). [source:swissprot;acc:p55039]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 3092\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dgcr14 protein (digeorge syndrome critical region 14) (es2 protein). [source:swissprot;acc:q96df8]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 17\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 460\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 1365\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 2.96739\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dgcr8 protein (digeorge syndrome critical region 8). [source:swissprot;acc:q8wyq5]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 3006\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent di-ras2. [source:refseq;acc:nm\_017594]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 706\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6912.08\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7734.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.11897\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dihydrofolate reductase (ec 1.5.1.3). [source:swissprot;acc:p00374]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1803\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4980.54\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5307.81\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06571\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial precursor (ec 2.3.1.12) (e2) (pdc-e2) (70 kda mitochondrial autoantigen of primary biliary cirrhosis) (pbc) (m2 antigen complex 70 kda subunit). [source:swissprot;acc:p10515]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2464\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6291.2\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6486.07\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03098\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dihydrolipoamide dehydrogenase, mitochondrial precursor (ec 1.8.1.4) (glycine cleavage system l protein). [source:swissprot;acc:p09622]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2600\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6185\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6283.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.01597\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor (ec 2.3.1.61) (e2) (e2k). [source:swissprot;acc:p36957]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2535\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6452.33\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6603.94\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0235\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dihydroorotate dehydrogenase, mitochondrial precursor (ec 1.3.3.1) (dihydroorotate oxidase) (dhodehase) (fragment). [source:swissprot;acc:q02127]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 830\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5745.61\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6354.75\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.10602\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dihydropyrimidine dehydrogenase [nadp+] precursor (ec 1.3.1.2) (dpd) (dhpdhase) (dihydrouracil dehydrogenase) (dihydrothymine dehydrogenase). [source:swissprot;acc:q12882]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 714\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5222.71\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5834.57\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.11715\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dimeric dihydrodiol dehydrogenase; 3-deoxyglucosone reductase. [source:refseq;acc:nm\_014475]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1629\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6158.32\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6590.99\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07026\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dimethylaniline monooxygenase [n-oxide forming] 1 (ec 1.14.13.8) (fetal hepatic flavin-containing monooxygenase 1) (fmo 1) (dimethylaniline oxidase 1). [source:swissprot;acc:q01740]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 975\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5365.14\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5884.43\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.09679\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dimethylaniline monooxygenase [n-oxide forming] 2 (ec 1.14.13.8) (pulmonary flavin-containing monooxygenase 2) (fmo 2) (dimethylaniline oxidase 2) (fmo 1b1). [source:swissprot;acc:q99518]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 974\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5365.06\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5884.52\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.09682\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dimethylaniline monooxygenase [n-oxide forming] 3 (ec 1.14.13.8) (hepatic flavin-containing monooxygenase 3) (fmo 3) (dimethylaniline oxidase 3) (fmo form 2) (fmo ii). [source:swissprot;acc:p31513]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 956\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5364.77\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5884.89\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.09695\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dimethylaniline monooxygenase [n-oxide forming] 4 (ec 1.14.13.8) (hepatic flavin-containing monooxygenase 4) (fmo 4) (dimethylaniline oxidase 4). [source:swissprot;acc:p31512]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 976\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5365.22\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5884.32\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.09675\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dimethylaniline monooxygenase [n-oxide forming] 5 (ec 1.14.13.8) (hepatic flavin-containing monooxygenase 5) (fmo 5) (dimethylaniline oxidase 5). [source:swissprot;acc:p49326]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 951\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5364.3\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5885.48\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.09716\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dipeptidyl aminopeptidase-like protein 6 (dipeptidylpeptidase vi) (dipeptidylpeptidase 6) (dipeptidyl peptidase iv like protein) (dipeptidyl aminopeptidase-related protein) (dppx). [source:swissprot;acc:p42658]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 930\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5638.65\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6194.23\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.09853\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dipeptidyl peptidase 8 isoform 2; dipeptidyl peptidase 8. [source:refseq;acc:nm\_017743]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2669\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4336.58\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4310.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0061\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dipeptidylpeptidase 10; dipeptidyl peptidase iv-related protein 3. [source:refseq;acc:nm\_020868]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 927\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5638.64\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6194.22\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.09853\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent dipeptidylpeptidase 9; dipeptidyl peptidase 9; dipeptidyl peptidase iv-related protein-2. [source:refseq;acc:nm\_139159]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2670\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4336.62\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4310.35\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.00609\vspace{3pt}}\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/