Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1313 to 1362 of 3228 in total 
Value Type: Ranked
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.16666666666667\textwidth}
\def\wcB{0.16666666666667\textwidth}
\def\wcC{0.16666666666667\textwidth}
\def\wcD{0.16666666666667\textwidth}
\def\wcE{0.16666666666667\textwidth}
\begin{longtable}{|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1313\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
signal transducer and activator of transcription 3 (acute-phase response factor). [source:swissprot;acc:p40763]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
222.573\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.75\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.02326\vspace{3pt}}}\\\cline{1-2}\cline{4-4}
\parbox{\wcA}{\vspace{3pt}\noindent
1314\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
signal transducer and activator of transcription 4. [source:swissprot;acc:q14765]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
227.751\vspace{3pt}}&\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
1315\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
signal transducer and activator of transcription 1-alpha/beta (transcription factor isgf-3 components p91/p84). [source:swissprot;acc:p42224]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
222.574\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.752\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1316\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
signal transducer and activator of transcription 6 (il-4 stat). [source:swissprot;acc:p42226]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
222.569\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.739\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02323\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1317\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
centromere protein j; centrosomal p4.1-associated protein; lyst-interacting protein lip1; lag-3-associated protein. [source:refseq;acc:nm\_018451]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
206.773\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
202.105\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0231\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1318\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
signal transducer and activator of transcription 5a. [source:swissprot;acc:p42229]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
222.546\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.673\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.02304\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
1319\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
glycogen [starch] synthase, muscle (ec 2.4.1.11). [source:swissprot;acc:p13807]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
159.75\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
156.153\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1320\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
signal transducer and activator of transcription 5b. [source:swissprot;acc:p51692]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
222.544\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.667\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02302\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1321\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
probable dimethyladenosine transferase (ec 2.1.1.-) (s- adenosylmethionine-6-n',n'-adenosyl(rrna) dimethyltransferase) (18s rrna dimethylase). [source:swissprot;acc:q9unq2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
226.347\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
221.259\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.023\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1322\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
endo-beta-n-acetylglucosaminidase. [source:refseq;acc:nm\_022759]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
159.86\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
156.275\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02294\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1323\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytoplasmic protein nck2 (nck adaptor protein 2) (sh2/sh3 adaptor protein nck-beta) (nck-2). [source:swissprot;acc:o43639]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
205.225\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
200.625\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02293\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1324\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
glycogen [starch] synthase, liver (ec 2.4.1.11). [source:swissprot;acc:p54840]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
159.993\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
156.421\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02284\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1325\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
werner helicase interacting protein isoform 1; putative helicase ruvbl; werner helicase interacting protein. [source:refseq;acc:nm\_020135]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
217.133\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212.289\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02282\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1326\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dj947l8.1.6 (novel cub and sushi (scr repeat) domain protein) (fragment). [source:sptrembl;acc:q9h4w2]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
218.509\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
213.648\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.02275\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1327\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein zic 4 (zinc finger protein of the cerebellum 4) (fragment). [source:swissprot;acc:q8n9l1]\vspace{3pt}}&&&\\\cline{1-2}\cline{4-4}
\parbox{\wcA}{\vspace{3pt}\noindent
1328\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
calcipressin 2 (thyroid hormone-responsive protein zaki-4) (down syndrome candidate region 1-like 1) (myocyte-enriched calcineurin interacting protein 2) (mcip2). [source:swissprot;acc:q14206]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
213.649\vspace{3pt}}&\\\cline{1-2}\cline{4-4}
\parbox{\wcA}{\vspace{3pt}\noindent
1329\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dj947l8.1.1 (novel cub and sushi (scr repeat) domain protein) (fragment). [source:sptrembl;acc:q9h4v7]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
213.648\vspace{3pt}}}&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1330\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
calcipressin 1 (down syndrome critical region protein 1) (myocyte- enriched calcineurin interacting protein 1) (mcip1) (adapt78). [source:swissprot;acc:p53805]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
218.508\vspace{3pt}}&&\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
1331\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
calcipressin 3 (down syndrome candidate region 1-like protein 2) (myocyte-enriched calcineurin interacting protein 3) (mcip3). [source:swissprot;acc:q9uka8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
218.509\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
213.649\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1332\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome oxidase biogenesis protein oxa1, mitochondrial precursor (oxa1-like protein) (oxa1hs). [source:swissprot;acc:q15070]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
220.681\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
215.78\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.02271\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1333\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l34, mitochondrial precursor (l34mt). [source:swissprot;acc:q9bq48]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1334\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
jm4 protein. [source:refseq;acc:nm\_007213]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
199.643\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
204.163\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02264\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1335\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytoskeleton related vitamin a responsive protein; glutamate transporter eeac1-associated protein; dermal papilla derived protein 11; putative mapk activating protein pm27. [source:refseq;acc:nm\_006407]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
199.771\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
204.287\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02261\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1336\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
n-acetylgalactosamine kinase (ec 2.7.1.-) (galnac kinase) (galactokinase 2). [source:swissprot;acc:q01415]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
215.162\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
210.412\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.02257\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1337\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
galactose-1-phosphate uridylyltransferase (ec 2.7.7.12) (gal-1-p uridylyltransferase) (udp-glucose--hexose-1-phosphate uridylyltransferase). [source:swissprot;acc:p07902]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1338\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
udp-glucose 4-epimerase (ec 5.1.3.2) (galactowaldenase) (udp- galactose 4-epimerase). [source:swissprot;acc:q14376]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1339\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
epididymal secretory protein e1 precursor (niemann-pick disease type c2 protein) (epi-1) (he1) (epididymal secretory protein 14.6) (esp14.6). [source:swissprot;acc:q15668]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
205.204\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
200.71\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02239\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1340\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
histone-lysine n-methyltransferase, h3 lysine-9 specific 2 (ec 2.1.1.43) (histone h3-k9 methyltransferase 2) (h3-k9-hmtase 2) (suppressor of variegation 3-9 homolog 2) (su(var)3-9 homolog 2). [source:swissprot;acc:q9h5i1]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
226.433\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
231.491\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.02234\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1341\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 2 subunit 1 (eukaryotic translation initiation factor 2 alpha subunit) (eif-2-alpha) (eif- 2alpha) (eif-2a). [source:swissprot;acc:p05198]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1342\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
histone-lysine n-methyltransferase, h3 lysine-9 specific 1 (ec 2.1.1.43) (histone h3-k9 methyltransferase 1) (h3-k9-hmtase 1) (suppressor of variegation 3-9 homolog 1) (su(var)3-9 homolog 1). [source:swissprot;acc:o43463]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1343\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
m-phase inducer phosphatase 1 (ec 3.1.3.48) (dual specificity phosphatase cdc25a). [source:swissprot;acc:p30304]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
258.558\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
252.916\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02231\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1344\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
exonuclease 1 isoform b; rad2 nuclease family member, homolog of s. cerevisiae exonuclease 1. [source:refseq;acc:nm\_006027]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
216.772\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
221.594\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.02224\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1345\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
phd finger protein 9. [source:refseq;acc:nm\_018062]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1346\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
small optic lobes homolog; small optic lobes, drosophila, homolog of. [source:refseq;acc:nm\_005632]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1347\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
lipoic acid synthetase, mitochondrial (lip-syn) (lipoate synthase) (hussy-01) (fragment). [source:swissprot;acc:o43766]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
204.961\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
209.517\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02223\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1348\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein zic 1 (zinc finger protein of the cerebellum 1). [source:swissprot;acc:q15915]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
218.569\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
213.832\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02215\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1349\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein zic 3 (zinc finger protein of the cerebellum 3). [source:swissprot;acc:o60481]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
218.572\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
213.841\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02212\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1350\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein zic 2 (zinc finger protein of the cerebellum 2). [source:swissprot;acc:o95409]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
218.574\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
213.847\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0221\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1351\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
prohibitin. [source:swissprot;acc:p35232]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
211.513\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
206.941\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.02209\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1352\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
repressor of estrogen receptor activity; b-cell associated protein. [source:refseq;acc:nm\_007273]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1353\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
heparin sulfate n-deacetylase/n-sulfotransferase (ec 2.8.2.-) (n- hsst) (n-heparin sulfate sulfotransferase) (glucosaminyl n- deacetylase/n-sulfotransferase). [source:swissprot;acc:p52849]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
228.409\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
223.475\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.02208\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1354\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
n-deacetylase/n-sulfotransferase (heparan glucosaminyl) 3. [source:refseq;acc:nm\_004784]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1355\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
n-deacetylase/n-sulfotransferase 4. [source:refseq;acc:nm\_022569]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1356\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
heparan sulfate n-deacetylase/n-sulfotransferase (ec 2.8.2.8) (n-hsst) (hsnst) ([heparan sulfate]-glucosamine n-sulfotransferase) (n-heparan sulfate sulfotransferase) (glucosaminyl n-deacetylase/n- sulfotransferase). [source:swissprot;acc:p52848]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
1357\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
protein cdc27hs (cell division cycle protein 27 homolog) (h-nuc). [source:swissprot;acc:p30260]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1358\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
upstream stimulatory factor 1 (major late transcription factor 1). [source:swissprot;acc:p22415]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
214.987\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
210.359\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.022\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1359\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
glutathione s-transferase theta 2 (ec 2.5.1.18) (gst class-theta). [source:swissprot;acc:p30712]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
228.642\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
223.726\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02197\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1360\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
tgf-beta receptor type i precursor (ec 2.7.1.37) (tgfr-1) (tgf-beta type i receptor) (serine/threonine-protein kinase receptor r4) (skr4) (activin receptor-like kinase 5) (alk-5). [source:swissprot;acc:p36897]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
223.89\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
228.805\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.02195\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
1361\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
upstream stimulatory factor 2 (upstream transcription factor 2) (fos-interacting protein) (fip) (major late transcription factor 2). [source:swissprot;acc:q15853]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
214.971\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
210.354\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1362\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
peroxisomal n1-acetyl-spermine/spermidine oxidase. [source:refseq;acc:nm\_152911]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
228.644\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
223.736\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02194\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/