Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene Hugo description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 1133 to 1182 of 3228 in total 
Value Type: Ranked
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

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\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1133\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SEC13\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
sec13-related protein. [source:swissprot;acc:p55735]\vspace{3pt}}&\multirow{12}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
218.484\vspace{3pt}}}&\multirow{13}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
212.675\vspace{3pt}}}&\multirow{12}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.02731\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1134\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ATP6V1G3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
vacuolar atp synthase subunit g 3 (ec 3.6.3.14) (v-atpase g subunit 3) (vacuolar proton pump g subunit 3) (v-atpase 13 kda subunit 3). [source:swissprot;acc:q96lb4]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1135\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ATP6V1B2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
vacuolar atp synthase subunit b, brain isoform (ec 3.6.3.14) (v-atpase b2 subunit) (vacuolar proton pump b isoform 2) (endomembrane proton pump 58 kda subunit) (ho57). [source:swissprot;acc:p21281]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1136\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SEC31A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
yeast sec31p homolog. [source:refseq;acc:nm\_014933]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1137\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ATP6V1G1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
vacuolar atp synthase subunit g 1 (ec 3.6.3.14) (v-atpase g subunit 1) (vacuolar proton pump g subunit 1) (v-atpase 13 kda subunit 1) (vacuolar atp synthase subunit m16). [source:swissprot;acc:o75348]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1138\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ATP6V1E1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
vacuolar atp synthase subunit e (ec 3.6.3.14) (v-atpase e subunit) (vacuolar proton pump e subunit) (v-atpase 31 kda subunit) (p31). [source:swissprot;acc:p36543]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1139\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GDAP1L1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ganglioside-induced differentiation-associated protein 1-like 1. [source:refseq;acc:nm\_024034]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1140\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DDX39\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dead (asp-glu-ala-asp) box polypeptide 39 isoform 1; nuclear rna helicase, decd variant of dead box family. [source:refseq;acc:nm\_005804]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1141\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
GDAP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ganglioside-induced differentiation-associated protein 1. [source:refseq;acc:nm\_018972]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1142\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ATP6V1D\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
vacuolar atp synthase subunit d (ec 3.6.3.14) (v-atpase d subunit) (vacuolar proton pump d subunit) (v-atpase 28 kda accessory protein). [source:swissprot;acc:q9y5k8]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1143\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SEC31B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
secretory pathway component sec31b-1. [source:refseq;acc:nm\_015490]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1144\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ATP6V1H\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
vacuolar atp synthase subunit h (ec 3.6.3.14) (v-atpase h subunit) (vacuolar proton pump h subunit) (v-atpase 50/57 kda subunits) (vacuolar proton pump subunit sfd) (cgi-11). [source:swissprot;acc:q9ui12]\vspace{3pt}}&&&\\\cline{1-4}\cline{6-6}
\parbox{\wcA}{\vspace{3pt}\noindent
1145\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ATP6V1F\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
vacuolar atp synthase subunit f (ec 3.6.3.14) (v-atpase f subunit) (vacuolar proton pump f subunit) (v-atpase 14 kda subunit). [source:swissprot;acc:q16864]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.481\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.0273\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1146\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ATP6V1B1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
vacuolar atp synthase subunit b, kidney isoform (ec 3.6.3.14) (v- atpase b1 subunit) (vacuolar proton pump b isoform 1) (endomembrane proton pump 58 kda subunit). [source:swissprot;acc:p15313]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.483\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212.676\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1147\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PEX14\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
peroxisomal membrane protein pex14 (peroxin-14) (peroxisomal membrane anchor protein pex14) (pts1 receptor docking protein). [source:swissprot;acc:o75381]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
208.651\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
203.109\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02729\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1148\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ubiquitin. [source:swissprot;acc:p02248]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
209.061\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
203.518\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02724\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1149\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
BYSL\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
bystin. [source:swissprot;acc:q13895]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
239.505\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
233.185\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0271\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1150\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SNX1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
sorting nexin 1. [source:swissprot;acc:q13596]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
209.868\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215.522\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02694\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1151\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MTX1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
metaxin 1. [source:swissprot;acc:q13505]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
199.552\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
204.925\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02693\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1152\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EPS8L1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
epidermal growth factor receptor pathway substrate 8-like protein 1 isoform c; epidermal growth factor receptor pathway substrate 8-related protein 1; eps8-related protein 1. [source:refseq;acc:nm\_139204]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
221.939\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.143\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02682\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1153\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EPS8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
epidermal growth factor receptor kinase substrate eps8. [source:swissprot;acc:q12929]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
221.93\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.146\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02676\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1154\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PPA1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
inorganic pyrophosphatase (ec 3.6.1.1) (pyrophosphate phospho- hydrolase) (ppase). [source:swissprot;acc:q15181]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
224.307\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
230.242\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.02646\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1155\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PPA2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
inorganic pyrophosphatase 2 isoform 1. [source:refseq;acc:nm\_176869]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1156\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
AIPL1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
aryl-hydrocarbon interacting protein-like 1. [source:swissprot;acc:q9nzn9]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1157\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
AIP\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ah receptor-interacting protein (aip) (immunophilin homolog ara9) (hbv-x associated protein 2). [source:swissprot;acc:o00170]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1158\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EPS8L2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
epidermal growth factor receptor pathway substrate 8-like protein 2; eps8-related protein 2; epidermal growth factor receptor pathway substrate 8-related protein 2. [source:refseq;acc:nm\_022772]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
221.877\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.167\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.02641\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1159\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
PROSC\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
proline synthetase co-transcribed bacterial homolog protein. [source:swissprot;acc:o94903]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
170.28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
165.898\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1160\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
OGDH\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
2-oxoglutarate dehydrogenase e1 component, mitochondrial precursor (ec 1.2.4.2) (alpha-ketoglutarate dehydrogenase). [source:swissprot;acc:q02218]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
208.55\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
214.041\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02633\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1161\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
kappa b-ras 1. [source:refseq;acc:nm\_020345]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
220.758\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
215.097\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.02632\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1162\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NKIRAS2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
i-kappa-b-interacting ras-like protein 2. [source:refseq;acc:nm\_017595]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1163\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SNAPAP\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
snare associated protein snapin. [source:refseq;acc:nm\_012437]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1164\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TLE4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transducin-like enhancer protein 4. [source:swissprot;acc:q04727]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.438\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.818\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02628\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1165\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TLE3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transducin-like enhancer protein 3 (esg3). [source:swissprot;acc:q04726]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.401\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.785\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.02627\vspace{3pt}}}\\\cline{1-5}
\parbox{\wcA}{\vspace{3pt}\noindent
1166\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
TLE2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transducin-like enhancer protein 2 (esg2). [source:swissprot;acc:q04725]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.374\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.759\vspace{3pt}}&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1167\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
EN2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
homeobox protein engrailed-2 (hu-en-2). [source:swissprot;acc:p19622]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
219.399\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
213.784\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.02626\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1168\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
CXXC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cpg binding protein (protein containing phd finger and cxxc domain 1). [source:swissprot;acc:q9p0u4]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1169\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ABT1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
activator of basal transcription 1; tata-binding protein-binding protein; basal transcriptional activator. [source:refseq;acc:nm\_013375]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1170\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cytokine-like nuclear factor n-pac. [source:refseq;acc:nm\_032569]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1171\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
HECW1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
hect type e3 ubiquitin ligase. [source:refseq;acc:nm\_015052]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1172\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transducin-like enhancer protein 1 (esg1). [source:swissprot;acc:q04724]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.375\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.767\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02623\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1173\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
DPH1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
candidate tumor suppressor in ovarian cancer 2. [source:refseq;acc:nm\_080822]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
229.243\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
235.246\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02619\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1174\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
COPE\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
coatomer epsilon subunit (epsilon-coat protein) (epsilon-cop). [source:swissprot;acc:o14579]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
187.964\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
192.849\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02599\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1175\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ATP6V0C\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
vacuolar atp synthase 16 kda proteolipid subunit (ec 3.6.3.14). [source:swissprot;acc:p27449]\vspace{3pt}}&\multirow{7}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
218.186\vspace{3pt}}}&\multirow{7}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
212.672\vspace{3pt}}}&\multirow{7}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.02593\vspace{3pt}}}\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1176\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SGCZ\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
sarcoglycan zeta; zeta-sarcoglycan. [source:refseq;acc:nm\_139167]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1177\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ACBD3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
golgi complex associated protein 1; golgi resident protein gcp60; peripherial benzodiazepine receptor associated protein; golgi phosphoprotein 1; pbr associated protein; pka (rialpha)-associated protein. [source:refseq;acc:nm\_022735]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1178\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SGCD\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
delta-sarcoglycan (sg-delta) (35 kda dystrophin-associated glycoprotein) (35dag). [source:swissprot;acc:q92629]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1179\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
MARCH8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cellular modulator of immune recognition. [source:refseq;acc:nm\_145021]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1180\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ATP6V0B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
vacuolar atp synthase 21 kda proteolipid subunit (ec 3.6.3.14) (hatpl). [source:swissprot;acc:q99437]\vspace{3pt}}&&&\\\cline{1-3}
\parbox{\wcA}{\vspace{3pt}\noindent
1181\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
SGCG\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
gamma-sarcoglycan (gamma-sg) (35 kda dystrophin-associated glycoprotein) (35dag). [source:swissprot;acc:q13326]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1182\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
NCALD\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
neurocalcin delta. [source:swissprot;acc:p29554]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
225.104\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
230.931\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02589\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/