Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Gene Rank description Value Type Filtered Network Comparison Type Interaction Map red green network_comparison
Results: HTML CSV LaTeX Showing element 101 to 150 of 29840 in total 
Interaction Map: High confidence

\def\wcA{0.11111111111111\textwidth}
\def\wcB{0.11111111111111\textwidth}
\def\wcC{0.11111111111111\textwidth}
\def\wcD{0.11111111111111\textwidth}
\def\wcE{0.11111111111111\textwidth}
\def\wcF{0.11111111111111\textwidth}
\def\wcG{0.11111111111111\textwidth}
\def\wcH{0.11111111111111\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Filtered\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{12}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
7\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-a4 (hox-1d) (hox-1.4). [source:swissprot;acc:q00056]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
9.43398\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
943398\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-c4 (hox-3e) (cp19). [source:swissprot;acc:p09017]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
22286\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
13216\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
9070\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear dna-binding protein; small unique nuclear receptor corepressor; c1d dna-binding protein. [source:refseq;acc:nm\_006333]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
310840\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
442993\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
132153\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
pantothenate kinase 2, mitochondrial precursor (ec 2.7.1.33) (pantothenic acid kinase 2) (hpank2). [source:swissprot;acc:q9bz23]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
145.551\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
168.796\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
23.245\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein cgi-126 (protein hspc155). [source:swissprot;acc:q9y3c8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
288.754\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
212.554\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
76.2\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
sedlin. [source:swissprot;acc:o14582]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
43\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
4300000\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein e (snrnp-e) (sm protein e) (sm-e) (sme). [source:swissprot;acc:p08578]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
82802.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
111762\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
28959.7\vspace{3pt}}\\\cline{2-8}
&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
sphingomyelin phosphodiesterase 2 (ec 3.1.4.12) (neutral sphingomyelinase) (nsmase) (n-smase) (lyso-platelet activating factor- phospholipase c) (lyso-paf-plc). [source:swissprot;acc:o60906]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
339.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
314.926\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
27.2805\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
11.544\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
33.9632\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
18.4255\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.84327\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin-like protein smt3b (sentrin 2) (hsmt3). [source:swissprot;acc:p55855]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
65.4535\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
49.8523\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
15.6012\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 277. [source:swissprot;acc:q9nrm2]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
13174.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
15605.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2430.4\vspace{3pt}}\\\cline{1-2}\cline{4-8}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
8\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
db83 protein. [source:swissprot;acc:p57088]\vspace{3pt}}}&&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
339.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
314.926\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
27.2805\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
11.544\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
33.9632\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
18.4255\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.84327\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
deoxyribonuclease ii beta isoform 1 precursor; deoxyribonuclease ii beta; endonuclease dlad. [source:refseq;acc:nm\_021233]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
250303\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
354894\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
104591\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
ero1-like. [source:refseq;acc:nm\_014584]\vspace{3pt}}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.59148\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent
159148\vspace{3pt}}\\\cline{3-3}\cline{6-6}\cline{8-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
9.05539\vspace{3pt}}&&\parbox{\wcH}{\vspace{3pt}\noindent
905539\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
hbs1-like. [source:refseq;acc:nm\_006620]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
215\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
322\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.49767\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-c6 (hox-3c) (hho.c8) (cp25). [source:swissprot;acc:p09630]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
22286\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
13216\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
9070\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
junctophilin 3 (junctophilin type 3) (jp-3). [source:swissprot;acc:q8wxh2]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
288\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
362\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
74\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
nif3-like protein 1 (amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 1) (my018 protein) (mds015). [source:swissprot;acc:q9gzt8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
72.1137\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
56.7758\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
15.3379\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear receptor co-repressor/hdac3 complex subunit tblr1 (tbl1- related protein 1). [source:swissprot;acc:q9bzk7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
11525\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
21888\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.89918\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleoporin nup43 (p42). [source:swissprot;acc:q8nfh3]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
5106.93\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7500.75\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2393.82\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
pantothenate kinase 1 (ec 2.7.1.33) (pantothenic acid kinase 1) (hpank1) (hpank). [source:swissprot;acc:q8te04]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
21185\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
28492\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7307\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
pantothenate kinase 3 (ec 2.7.1.33) (pantothenic acid kinase 3) (hpank3). [source:swissprot;acc:q9h999]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
145.551\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
168.796\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
23.245\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
synbindin (trs23 homolog) (hematopoietic stem/progenitor cell protein 172) (hspc172) (ptd009) (cgi-104). [source:swissprot;acc:q9y296]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
43\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
4300000\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription initiation factor tfiid 135 kda subunit (tafii-135) (tafii135) (tafii-130) (tafii130). [source:swissprot;acc:o00268]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
414704\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
386144\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
28560\vspace{3pt}}\\\cline{1-2}\cline{6-8}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
9\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
anaphase promoting complex subunit 11 (hepatocellular carcinoma associated ring finger protein) (hspc214). [source:swissprot;acc:q9nyg5]\vspace{3pt}}&&&&\parbox{\wcF}{\vspace{3pt}\noindent
195397\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
170319\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
25078\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ataxin 2; olivopontocerebellar ataxia 2, autosomal dominant. [source:refseq;acc:nm\_002973]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
12478\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
14756\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2278\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ba508n22.1 (hspc025) (fragment). [source:sptrembl;acc:q9hcw5]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
85\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
6410\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
75.4118\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-a4 (hox-1d) (hox-1.4). [source:swissprot;acc:q00056]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&&\multirow{6}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
22286\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
13216\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
9070\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
junctophilin 2 (junctophilin type 2) (jp-2). [source:swissprot;acc:q9br39]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
288\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
362\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
74\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial solute carrier protein. [source:refseq;acc:nm\_145305]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
145.551\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
168.796\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
23.245\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear dna-binding protein; small unique nuclear receptor corepressor; c1d dna-binding protein. [source:refseq;acc:nm\_006333]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
126.359\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
111.067\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
15.292\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
pantothenate kinase 2, mitochondrial precursor (ec 2.7.1.33) (pantothenic acid kinase 2) (hpank2). [source:swissprot;acc:q9bz23]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
21185\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
28492\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7307\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein phosphatase 1, regulatory subunit 7; sds22. [source:refseq;acc:nm\_002712]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
256169\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
162517\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
93652\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
similar to lysozyme c-1 (1,4-beta-n-acylmuramidase c, ec 3.2.1.17). [source:refseq;acc:nm\_032517]\vspace{3pt}}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\multirow{7}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
0.852071\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent
85207.1\vspace{3pt}}\\\cline{3-3}\cline{6-6}\cline{8-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
7.74597\vspace{3pt}}&&\parbox{\wcH}{\vspace{3pt}\noindent
774597\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
tob2 protein (transducer of erbb-2 2). [source:swissprot;acc:q14106]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
398.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1281.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3.21581\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
37.5863\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
388.696\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10.3414\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
19.9625\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
35.798\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.79326\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
transducin beta-like 1y protein (transducin-beta-like 1, y-linked). [source:swissprot;acc:q9bq87]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
11525\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
21888\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.89918\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
xpa binding protein 1; mbd2 interactor protein; putative atp(gtp)-binding protein. [source:refseq;acc:nm\_007266]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
1\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
212\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
309\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.45755\vspace{3pt}}\\\hline
\multirow{6}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
10\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
baculoviral iap repeat-containing protein 5 (apoptosis inhibitor survivin) (apoptosis inhibitor 4). [source:swissprot;acc:o15392]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
176989\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
155919\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
21070\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
fructose-1,6-bisphosphatase isozyme 2 (ec 3.1.3.11) (d-fructose-1,6- bisphosphate 1-phosphohydrolase) (fbpase). [source:swissprot;acc:o00757]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
7509.39\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
14178.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.88805\vspace{3pt}}\\\cline{3-3}\cline{5-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
54.2583\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
40.2058\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
14.0525\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
guanine nucleotide-binding protein beta subunit-like protein 1 (g protein beta-subunit like protein 1) (wd40 repeat containing protein deleted in vcfs) (wdvcf protein) (fksg1 protein) (dgcrk3). [source:swissprot;acc:q9byb4]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
0.823905\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
82390.5\vspace{3pt}}\\\cline{3-3}\cline{7-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&&\parbox{\wcG}{\vspace{3pt}\noindent
7.68115\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
768115\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
lipopolysaccharide-responsive and beige-like anchor protein (cdc4-like protein) (beige-like protein). [source:swissprot;acc:p50851]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
85\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
6410\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
75.4118\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/