Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 830 to 879 of 3730 in total 
Value Type: Measured
Network Comparison Type: Divided
Interaction Map: High confidence

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\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
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\def\wcE{0.14285714285714\textwidth}
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\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Filtered\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
415\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 232. [source:swissprot;acc:q9uny5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
721.814\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
699.215\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03232\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
416\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
n-terminal acetyltransferase complex ard1 subunit homolog (ec 2.3.1.-). [source:swissprot;acc:p41227]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4509.54\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5223.95\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15842\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 24 (zinc finger protein 191) (zinc finger protein kox17) (retinoic acid suppression protein a) (rsg-a). [source:swissprot;acc:p17028]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
721.888\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
699.297\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03231\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
417\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
bag-family molecular chaperone regulator-3 (bcl-2 binding athanogene- 3) (bag-3) (bcl-2-binding protein bis) (docking protein cair-1). [source:swissprot;acc:o95817]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4522.71\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5233.14\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15708\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 215 (bwscr2 associated zinc-finger protein 2) (baz 2). [source:swissprot;acc:q9ul58]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
721.913\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
699.324\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0323\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
418\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
breast carcinoma amplified sequence 2; spliceosome associated protein, amplified in breast cancer. [source:refseq;acc:nm\_005872]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5493.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6350.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15603\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger imprinted 2. [source:swissprot;acc:q9nzv7]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
722.144\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
699.577\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03226\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
419\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l18a. [source:swissprot;acc:q02543]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
2688.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2604.71\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03225\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cdc5-like; cdc5 (cell division cycle 5, s. pombe, homolog)-like; cell division cycle 5, s. pombe, homolog-like; cdc5-related protein. [source:refseq;acc:nm\_001253]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
5493.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6350.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15603\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
420\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
hypoxanthine-guanine phosphoribosyltransferase (ec 2.4.2.8) (hgprt) (hgprtase). [source:swissprot;acc:p00492]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
10235.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11830.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15589\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
trinucleotide repeat containing 15. [source:refseq;acc:nm\_015575]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
18889\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
19496\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03214\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
421\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
importin 4. [source:refseq;acc:nm\_024658]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
491.926\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
476.639\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03207\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vav-2 protein. [source:swissprot;acc:p52735]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6660.02\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7697.78\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15582\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
422\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
kappa b-ras 1. [source:refseq;acc:nm\_020345]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1153.15\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1117.36\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03203\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear rna export factor 5 (tap-like protein 1) (tapl-1). [source:swissprot;acc:q9h1b4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5206.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6010.04\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15425\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
423\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
fibrillin 3. [source:refseq;acc:nm\_032447]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
14246\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
13809\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03165\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear rna export factor 3 (tap-like protein 3) (tapl-3). [source:swissprot;acc:q9h4d5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5207.03\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6010.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15423\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
424\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
histone h3.1 (h3/a) (h3/c) (h3/d) (h3/f) (h3/h) (h3/i) (h3/j) (h3/k) (h3/l). [source:swissprot;acc:p16106]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3967.18\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4091.59\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03136\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear rna export factor 1 (tip associating protein) (tip-associated protein) (mrna export factor tap). [source:swissprot;acc:q9ubu9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5207.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6010.45\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15413\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
425\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ran-binding protein 2-like 1 isoform 2; sperm membrane protein bs-63; ran-binding protein 2-like 1. [source:refseq;acc:nm\_032260]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
2070.81\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2134.56\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03079\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
saccharomyces cerevisiae nip7p homolog. [source:refseq;acc:nm\_016101]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
3729.02\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4301.58\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15354\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
426\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
pef protein with a long n-terminal hydrophobic domain (peflin). [source:refseq;acc:nm\_012392]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
5942.49\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6853.15\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15325\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ran-binding protein 2-like 1 isoform 2; sperm membrane protein bs-63; ran-binding protein 2-like 1. [source:refseq;acc:nm\_032260]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
2071.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2133.83\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03004\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
427\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
putative inorganic polyphosphate/atp-nad kinase (ec 2.7.1.23) (poly(p)/atp nad kinase). [source:swissprot;acc:o95544]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
1195.87\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1161.29\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02978\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase (ec 2.1.1.61). [source:swissprot;acc:o75648]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
11736.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
13531.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15297\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
428\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
glycogenin-2 (ec 2.4.1.186) (gn-2) (gn2). [source:swissprot;acc:o15488]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
14267.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
14688.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02953\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleolar gtp-binding protein 1 (chronic renal failure gene protein) (gtp-binding protein ngb). [source:swissprot;acc:q9bze4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3721.19\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4288.17\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15237\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
429\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
tbp-associated factor 9l; neuronal cell death-related protein; taf9-like rna polymerase ii, tata box binding protein (tbp)-associated factor, 31 kd; neuronal cell death-related gene in neuron-7; transcription associated factor tafii31l; transcription initiation factor iid, 31kd subunit. [source:refseq;acc:nm\_015975]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
472.351\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
485.852\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02858\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vinexin (sh3-containing adaptor molecule-1) (scam-1). [source:swissprot;acc:o60504]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6272.91\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7226.06\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15195\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
430\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial precursor (ec 1.3.5.1) (fp) (flavoprotein subunit of complex ii). [source:swissprot;acc:p31040]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10247.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
10535\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02803\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor dp-2 (e2f dimerization partner 2). [source:swissprot;acc:q14188]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
3804.09\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4379.37\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15123\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
431\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dead (asp-glu-ala-asp) box polypeptide 31 isoform 1; dead/dexh helicase ddx31. [source:refseq;acc:nm\_022779]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
3849.94\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4431.36\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15102\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nascent-polypeptide-associated complex alpha polypeptide. [source:refseq;acc:nm\_005594]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
146.622\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
150.709\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02787\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
432\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
high-glucose-regulated protein 8 (ny-ren-2 antigen). [source:swissprot;acc:q9y5a9]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
100.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
103.25\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02736\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial processing peptidase beta subunit, mitochondrial precursor (ec 3.4.24.64) (beta-mpp) (p-52). [source:swissprot;acc:o75439]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
5244.71\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6036.27\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15093\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
433\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial processing peptidase alpha subunit, mitochondrial precursor (ec 3.4.24.64) (alpha-mpp) (p-55) (ha1523). [source:swissprot;acc:q10713]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
5244.88\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6036.38\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15091\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sh3 adapter protein spin90 (sh3 protein interacting with nck, 90 kda) (vaca-interacting protein, 54 kda) (vip54) (af3p21) (diaphanous protein interacting protein) (dia interacting protein-1) (dip-1). [source:swissprot;acc:q9nzq3]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
100.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
103.25\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.02736\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
434\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
testis-specific protein tpx-1 precursor (cysteine-rich secretory protein-2) (crisp-2). [source:swissprot;acc:p16562]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
201\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
206.5\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquinol-cytochrome c reductase complex core protein i, mitochondrial precursor (ec 1.10.2.2). [source:swissprot;acc:p31930]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5246.38\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6037.37\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15077\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
435\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
elav-like protein 3 (hu-antigen c) (huc) (paraneoplastic cerebellar degeneration-associated antigen) (paraneoplastic limbic encephalitis antigen 21). [source:swissprot;acc:q14576]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5891.28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5737.71\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02677\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
proline synthetase co-transcribed bacterial homolog protein. [source:swissprot;acc:o94903]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5233.86\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6022.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1507\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
436\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
alpha-nac protein. [source:sptrembl;acc:q9h009]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
147.221\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
151.122\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0265\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
arg/abl-interacting protein 2 isoform 2; arg binding protein 2. [source:refseq;acc:nm\_021069]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6230.94\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7168.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15042\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
437\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
protein cgi-140 (protein ptd008) (my006 protein). [source:swissprot;acc:q9y284]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
2331\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2390\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02531\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
suppressor of swi4 1 homolog (ssf-1) (peter pan homolog). [source:swissprot;acc:q9nq55]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3779.92\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4348.48\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15042\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
438\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
3-hydroxyisobutyryl-coenzyme a hydrolase. [source:refseq;acc:nm\_014362]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
2925.57\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
2853.65\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0252\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
swi/snf-related, matrix-associated, actin-dependent regulator of chromatin subfamily f member 1 (swi-snf complex protein p270) (b120). [source:swissprot;acc:o14497]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6252.58\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
7192.88\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.15039\vspace{3pt}}}\\\cline{1-2}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
439\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
programmed cell death protein 6 (probable calcium-binding protein alg- 2). [source:swissprot;acc:o75340]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein c20orf45 (cgi-107). [source:swissprot;acc:q9y3b1]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
532.667\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
546\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02503\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
440\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
calcium-dependent protease, small subunit (calpain regulatory subunit) (calcium-activated neutral proteinase) (canp). [source:swissprot;acc:p04632]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6251.91\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7192.08\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15038\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/