Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
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Value Type description Rank Gene Interaction Map Network Comparison Type Filtered green red network_comparison
Results: HTML CSV LaTeX
Showing element 830 to 879 of 3228 in total
Value Type: Measured
Interaction Map: High confidence
Network Comparison Type: Divided
Filtered: 1

\def\wcA{0.16666666666667\textwidth}
\def\wcB{0.16666666666667\textwidth}
\def\wcC{0.16666666666667\textwidth}
\def\wcD{0.16666666666667\textwidth}
\def\wcE{0.16666666666667\textwidth}
\begin{longtable}{|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna topoisomerase ii, alpha isozyme (ec 5.99.1.3). [source:swissprot;acc:p11388]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
794\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7154.55\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6441.17\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.11075\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna topoisomerase ii, beta isozyme (ec 5.99.1.3). [source:swissprot;acc:q02880]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
795\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7154.13\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6441.14\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.11069\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna topoisomerase iii alpha (ec 5.99.1.2). [source:swissprot;acc:q13472]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1433\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6131.71\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5692.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07719\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-(apurinic or apyrimidinic site) lyase (ec 4.2.99.18) (ap endonuclease 1) (apex nuclease) (apen) (ref-1 protein). [source:swissprot;acc:p27695]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1065\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6984.94\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6393.81\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09245\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-binding protein a (cold shock domain protein a) (single-strand dna binding protein nf-gmb). [source:swissprot;acc:p16989]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2095\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7051.02\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6682.05\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05522\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-binding protein rfxank (regulatory factor x subunit b) (rfx-b) (ankyrin repeat family a protein 1). [source:swissprot;acc:o14593]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2728\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5583.64\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5603.24\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00351\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-directed rna polymerase i 135 kda polypeptide (ec 2.7.7.6) (rna polymerase i subunit 2) (rpa135). [source:swissprot;acc:q9h9y6]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2533\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3759.28\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3847.84\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02356\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-directed rna polymerase i 16 kda polypeptide (ec 2.7.7.6) (rpa16). [source:swissprot;acc:q9y2s0]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2069\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4892.66\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4632.65\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05613\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-directed rna polymerase i 40 kda polypeptide (ec 2.7.7.6) (rpa40) (rpa39). [source:swissprot;acc:o15160]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2523\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3710.01\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3803.04\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02508\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-directed rna polymerase i largest subunit (ec 2.7.7.6) (rna polymerase i 194 kda subunit) (rpa194). [source:swissprot;acc:o95602]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2381\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3521.41\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3667.94\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04161\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 13.3 kda polypeptide (ec 2.7.7.6) (rpb11). [source:swissprot;acc:p52435]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2371\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4868.52\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4668.29\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04289\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 14.4 kda polypeptide (ec 2.7.7.6) (rpb6) (rpb14.4) (rpabc2). [source:swissprot;acc:p41584]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2629\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4649.17\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4582.38\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01458\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 14.5 kda polypeptide (ec 2.7.7.6) (rpb9) (rpb14.5). [source:swissprot;acc:p36954]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2546\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4868.66\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4763.99\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02197\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 140 kda polypeptide (ec 2.7.7.6) (rna polymerase ii subunit 2) (rpb2). [source:swissprot;acc:p30876]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2306\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3461.21\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3619.07\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04561\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 16 kda polypeptide (ec 2.7.7.6) (rpb4). [source:swissprot;acc:o15514]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2446\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4166.99\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4031.94\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0335\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 19 kda polypeptide (ec 2.7.7.6) (rpb7). [source:swissprot;acc:p52433]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2581\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4654.97\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4570.81\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01841\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 23 kda polypeptide (ec 2.7.7.6) (rpb25) (xap4) (rpb5) (rpabc1). [source:swissprot;acc:p19388]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2582\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3829.53\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3899.28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01821\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 33 kda polypeptide (ec 2.7.7.6) (rpb3) (rna polymerase ii subunit 3) (rpb33) (rpb31). [source:swissprot;acc:p19387]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2555\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3775.86\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3852.99\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02043\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 7.6 kda polypeptide (ec 2.7.7.6) (rpb10) (rpb7.6) (rpabc5). [source:swissprot;acc:p52436]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2667\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4099.01\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4071.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00666\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-directed rna polymerase ii largest subunit (ec 2.7.7.6) (rpb1). [source:swissprot;acc:p24928]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2163\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3392.22\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3569.06\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05213\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-directed rna polymerase iii largest subunit (ec 2.7.7.6) (rpc155) (rpc1). [source:swissprot;acc:o14802]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2374\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3520.86\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3669.57\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04224\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-directed rna polymerases i, ii, and iii 17.1 kda polypeptide (ec 2.7.7.6) (rpb17) (rpb8) (rpabc3). [source:swissprot;acc:p52434]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2740\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4210.94\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4200.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00246\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-directed rna polymerases iii 12.5 kda polypeptide (ec 2.7.7.6) (rna polymerase iii c11 subunit) (hsc11p) (hrpc11) (my010 protein). [source:swissprot;acc:q9y2y1]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1795\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5866.02\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5501.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0663\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-directed rna polymerases iii 39 kda polypeptide (ec 2.7.7.6) (rna polymerase iii c39 subunit). [source:swissprot;acc:q9h1d9]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2633\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3947.54\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4000.73\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01347\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-repair protein complementing xp-a cells (xeroderma pigmentosum group a complementing protein). [source:swissprot;acc:p23025]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2971\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
dna-repair protein complementing xp-f cell (xeroderma pigmentosum group f complementing protein) (dna excision repair protein ercc-4). [source:swissprot;acc:q92889]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2801\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-repair protein complementing xp-g cells (xeroderma pigmentosum group g complementing protein) (dna excision repair protein ercc-5). [source:swissprot;acc:p28715]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2641\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3411.47\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3377.01\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0102\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dna-repair protein xrcc3 (x-ray repair cross-complementing protein 3). [source:swissprot;acc:o43542]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1550\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6464.16\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6025.86\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07274\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dnaj homolog subfamily b member 1 (heat shock 40 kda protein 1) (heat shock protein 40) (hsp40) (dnaj protein homolog 1) (hdj-1). [source:swissprot;acc:p25685]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2620\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5683\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5599.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01485\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dnaj homolog subfamily b member 11 precursor (er-associated dnaj protein 3) (erj3) (er-associated hsp40 co-chaperone) (hdj9) (pwp1- interacting protein 4). [source:swissprot;acc:q9ubs4]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
845\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6934.8\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6276.97\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.1048\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dnaj homolog subfamily b member 4 (heat shock 40 kda protein 1 homolog) (heat shock protein 40 homolog) (hsp40 homolog). [source:swissprot;acc:q9udy4]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2617\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5683\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5599.85\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.01485\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
dnaj homolog subfamily b member 5 (heat shock protein hsp40-3) (heat shock protein cognate 40) (hsc40) (hsp40-2). [source:swissprot;acc:o75953]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2619\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
doc-1 related protein (doc-1r). [source:swissprot;acc:o75956]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
48\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
1390.33\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
779.167\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.78438\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
docking protein 1 (p62(dok)) (downstream of tyrosine kinase 1) (pp62). [source:swissprot;acc:q99704]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
410\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
7081.46\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6102.59\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.1604\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
docking protein 2 (p56(dok-2)) (downstream of tyrosine kinase 2). [source:swissprot;acc:o60496]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
409\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
dok-like protein. [source:refseq;acc:nm\_024872]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
408\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dolichol-phosphate mannosyltransferase (ec 2.4.1.83) (dolichol- phosphate mannose synthase) (dolichyl-phosphate beta-d- mannosyltransferase) (mannose-p-dolichol synthase) (mpd synthase) (dpm synthase). [source:swissprot;acc:o60762]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
549\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6671.23\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5865.79\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.13731\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kda subunit precursor (ec 2.4.1.119) (oligosaccharyl transferase 48 kda subunit) (ddost 48 kda subunit). [source:swissprot;acc:p39656]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
190\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5864.86\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4571.89\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.28281\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dopachrome tautomerase precursor (ec 5.3.3.12) (dt) (dct) (dopachrome delta-isomerase) (tyrosinase-related protein 2) (trp-2) (trp2). [source:swissprot;acc:p40126]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1228\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6509.65\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5998.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0852\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
double-strand break repair protein mre11a (mre11 homolog 1). [source:swissprot;acc:p49959]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1371\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
9487.34\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10231.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07847\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
double-stranded rna-binding zinc finger protein jaz. [source:refseq;acc:nm\_012279]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
3054\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
doublecortin (lissencephalin-x) (lis-x) (doublin). [source:swissprot;acc:o43602]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1748\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6724.63\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6301.03\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.06723\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
doublesex and mab-3 related transcription factor 3; testis-specific protein; dmrt-like family a3. [source:refseq;acc:nm\_021240]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
3187\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
down-regulated in metastasis. [source:refseq;acc:nm\_014503]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
747\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4557.68\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4086.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.11527\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dpy-30-like protein. [source:swissprot;acc:q9c005]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1448\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6031.05\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5602.01\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07659\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dr1-associated protein 1; negative cofactor 2 alpha; dr1-associated corepressor. [source:refseq;acc:nm\_006442]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2416\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7752.09\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8048.38\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.03822\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dual specificity mitogen-activated protein kinase kinase 1 (ec 2.7.1.-) (map kinase kinase 1) (mapkk 1) (erk activator kinase 1) (mapk/erk kinase 1) (mek1). [source:swissprot;acc:q02750]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1428\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
6334.71\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5880.37\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.07726\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
dual specificity mitogen-activated protein kinase kinase 2 (ec 2.7.1.-) (map kinase kinase 2) (mapkk 2) (erk activator kinase 2) (mapk/erk kinase 2) (mek2). [source:swissprot;acc:p36507]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1430\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dual specificity mitogen-activated protein kinase kinase 3 (ec 2.7.1.-) (map kinase kinase 3) (mapkk 3) (mapk/erk kinase 3). [source:swissprot;acc:p46734]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1352\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6586.48\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6104.11\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07902\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
dual specificity mitogen-activated protein kinase kinase 4 (ec 2.7.1.-) (map kinase kinase 4) (jnk activating kinase 1) (c-jun n- terminal kinase kinase 1) (jnkk) (sapk/erk kinase 1) (sek1). [source:swissprot;acc:p45985]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1813\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6245.4\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5866.19\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.06464\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/