Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 8264 to 8313 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2066\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
similar to glucosamine-phosphate n-acetyltransferase (hypothetical protein flj33258). [source:sptrembl;acc:q96ek6]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
5882.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6213.34\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05622\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2067\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s15 (rig protein). [source:swissprot;acc:p11174]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
3602.75\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
3411.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05616\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
adenylosuccinate lyase (ec 4.3.2.2) (adenylosuccinase) (asl) (asase). [source:swissprot;acc:p30566]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
193.226\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
191.639\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00828\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
conserved oligomeric golgi complex component 6. [source:swissprot;acc:q9y2v7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
66.6886\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
68.4366\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02621\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
similar to actin-related protein 3-beta. [source:sptrembl;acc:q96bt2]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
24225.6\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
26399\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.08972\vspace{3pt}}}\\\cline{1-2}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2068\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
arp2/3 complex 41 kda subunit (p41-arc) (actin-related protein 2/3 complex subunit 1b). [source:swissprot;acc:o15143]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
fas apoptotic inhibitory molecule. [source:refseq;acc:nm\_018147]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
220.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
222.61\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0082\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial ribosomal protein l2. [source:refseq;acc:nm\_015950]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3602.75\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
3411.17\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05616\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ring finger protein 40; 95 kda retinoblastoma protein binding protein; likely ortholog of rat staring. [source:refseq;acc:nm\_014771]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
59.5914\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
61.1533\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02621\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2069\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase i 16 kda polypeptide (ec 2.7.7.6) (rpa16). [source:swissprot;acc:q9y2s0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4632.65\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4892.66\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05613\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dual specificity mitogen-activated protein kinase kinase 1 (ec 2.7.1.-) (map kinase kinase 1) (mapkk 1) (erk activator kinase 1) (mapk/erk kinase 1) (mek1). [source:swissprot;acc:q02750]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.555\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215.807\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0081\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nin one binding protein; adenocarcinoma antigen recognized by t lymphocytes 4. [source:refseq;acc:nm\_014062]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.9946\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
57.4614\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0262\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 198 (fused in myeloproliferative disorders protein) (rearranged in atypical myeloproliferative disorder protein). [source:swissprot;acc:q9ubw7]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
24225.6\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
26399\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.08972\vspace{3pt}}}\\\cline{1-2}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2070\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
actin-like protein 3 (actin-related protein 3) (actin-2). [source:swissprot;acc:p32391]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
polybromo 1. [source:refseq;acc:nm\_018165]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
61.089\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
62.6862\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02615\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
rac gtpase activating protein 1; gtpase activating protein. [source:refseq;acc:nm\_013277]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
223.199\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
225.008\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0081\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
splicing factor, proline-and glutamine-rich (polypyrimidine tract- binding protein-associated splicing factor) (ptb-associated splicing factor) (psf) (dna-binding p52/p100 complex, 100 kda subunit). [source:swissprot;acc:p23246]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
10178.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9638.08\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05607\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2071\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
28s ribosomal protein s26, mitochondrial precursor (mrp-s26) (mrp- s13). [source:swissprot;acc:q9byn8]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6437.24\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6797.24\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05592\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
arp2/3 complex 21 kda subunit (p21-arc) (actin-related protein 2/3 complex subunit 3). [source:swissprot;acc:o15145]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24225.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26399\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08972\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
similar to kinase suppressor of ras (fragment). [source:sptrembl;acc:q8ivt5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.555\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215.807\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0081\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
swi/snf-related matrix-associated actin-dependent regulator of chromatin a5; sucrose nonfermenting-like 5. [source:refseq;acc:nm\_003601]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
61.089\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
62.6862\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02615\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2072\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dual specificity mitogen-activated protein kinase kinase 2 (ec 2.7.1.-) (map kinase kinase 2) (mapkk 2) (erk activator kinase 2) (mapk/erk kinase 2) (mek2). [source:swissprot;acc:p36507]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.555\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
215.807\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0081\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
enhancer of rudimentary homolog. [source:swissprot;acc:q14259]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6437.24\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6797.24\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05592\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nardilysin precursor (ec 3.4.24.61) (n-arginine dibasic convertase) (nrd convertase) (nrd-c). [source:swissprot;acc:o43847]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24225.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26399\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08972\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
possible global transcription activator snf2l4 (snf2-beta) (brg-1 protein) (mitotic growth and transcription activator) (brahma protein homolog 1). [source:swissprot;acc:p51532]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
61.089\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
62.6862\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02615\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2073\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
actin-related protein 2/3 complex subunit 1a (sop2-like protein). [source:swissprot;acc:q92747]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24225.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26399\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08972\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
peptidylprolyl isomerase-like 4; cyclophilin-type peptidyl-prolyl cis-trans isomerase; ppiase; serologically defined breast cancer antigen ny-br-18. [source:refseq;acc:nm\_139126]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6083.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6423.12\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05585\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
possible global transcription activator snf2l1. [source:swissprot;acc:p28370]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
61.089\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
62.6862\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02615\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
topoisomerase-related function protein 4-2. [source:refseq;acc:nm\_022447]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
229.267\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
227.433\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00806\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2074\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l14 (cag-isl 7). [source:swissprot;acc:p50914]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3614.91\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
3423.89\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05579\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dead-box protein abstrakt homolog. [source:swissprot;acc:q9ujv9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
34266.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
31445.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0897\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna polymerase gamma subunit 1 (ec 2.7.7.7) (mitochondrial dna polymerase catalytic subunit) (polg-alpha). [source:swissprot;acc:p54098]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.324\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
214.599\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00804\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tbp-associated factor 172 (taf-172) (taf(ii)170). [source:swissprot;acc:o14981]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
61.089\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
62.6862\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02615\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2075\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cd109; gov system alloantigens on platelets. [source:refseq;acc:nm\_133493]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
221.703\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
223.483\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00803\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
possible global transcription activator snf2l2 (snf2-alpha). [source:swissprot;acc:p51531]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
61.089\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
62.6862\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02615\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine racemase (ec 5.1.1.-). [source:swissprot;acc:q9gzt4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3614.91\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
3423.89\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05579\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
signal recognition particle 68 kda protein (srp68). [source:swissprot;acc:q9uhb9]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
26521.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
28897.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08959\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2076\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
adapter-related protein complex 1 sigma 1b subunit (sigma-adaptin 1b) (adaptor protein complex ap-1 sigma-1b subunit) (golgi adaptor ha1/ap1 adaptin sigma-1b subunit) (clathrin assembly protein complex 1 sigma- 1b small chain) (sigma 1b subunit of ap-1 clathrin) (dc22). [source:swissprot;acc:p56377]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
25481.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27764.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08957\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
af-6 protein. [source:swissprot;acc:p55196]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5746.65\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6067.27\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05579\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
peptidyl-prolyl cis-trans isomerase nima-interacting 1 (ec 5.2.1.8) (rotamase pin1) (ppiase pin1). [source:swissprot;acc:q13526]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
221.703\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
223.483\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00803\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
swi/snf-related matrix-associated actin-dependent regulator of chromatin c2 isoform a; mammalian chromatin remodeling complex brg1-associated factor 170; chromatin remodeling complex baf170 subunit; swi3-like protein; swi/snf complex 170 kda subunit. [source:refseq;acc:nm\_003075]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
61.0883\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
62.6822\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02609\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2077\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l34. [source:swissprot;acc:p49207]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3614.91\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
3423.89\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05579\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
adapter-related protein complex 1 sigma 1c subunit (sigma-adaptin 1c) (adaptor protein complex ap-1 sigma-1c subunit) (golgi adaptor ha1/ap1 adaptin sigma-1c subunit) (clathrin assembly protein complex 1 sigma- 1c small chain) (sigma 1c subunit of ap-1 clathrin). [source:swissprot;acc:q96pc3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
25481.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27764.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08957\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 14.4 kda polypeptide (ec 2.7.7.6) (rpb6) (rpb14.4) (rpabc2). [source:swissprot;acc:p41584]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.3465\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
53.9391\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02609\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
iroquois-class homeodomain protein irx-4 (iroquois homeobox protein 4). [source:swissprot;acc:p78413]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
221.703\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
223.483\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00803\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
2078\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
adapter-related protein complex 1 sigma 1a subunit (sigma-adaptin 1a) (adaptor protein complex ap-1 sigma-1a subunit) (golgi adaptor ha1/ap1 adaptin sigma-1a subunit) (clathrin assembly protein complex 1 sigma- 1a small chain) (clathrin coat assembly protein ap19) (ha1 19 kda subunit) (sigma 1a subunit of ap-1 clathrin). [source:swissprot;acc:q00382]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
25481.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27764.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08957\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
channel associated protein of synapse-110 (chapsyn-110) (discs, large homolog 2). [source:swissprot;acc:q15700]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.3035\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
63.9253\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02603\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
fidgetin-like 1. [source:refseq;acc:nm\_022116]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.511\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
213.814\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.00794\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein transport protein sec61 alpha subunit isoform 2 (sec61 alpha- 2). [source:swissprot;acc:q9y2r3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3614.91\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
3423.89\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05579\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
2079\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
adapter-related protein complex 1 beta 1 subunit (beta-adaptin 1) (adaptor protein complex ap-1 beta-1 subunit) (golgi adaptor ha1/ap1 adaptin beta subunit) (clathrin assembly protein complex 1 beta large chain). [source:swissprot;acc:q10567]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
25451.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27731.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08957\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/