Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 5708 to 5757 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1427\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein zic 3 (zinc finger protein of the cerebellum 3). [source:swissprot;acc:o60481]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5658.55\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6095.85\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07728\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1428\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
collagen alpha 5(iv) chain precursor. [source:swissprot;acc:p29400]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
61.2937\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
63.6976\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna directed rna polymerase ii polypeptide j-related gene isoform 3; rpb11b1alpha protein; rpb11b1beta; dna-directed rna polymerase ii subunit 11. [source:refseq;acc:nm\_032959]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
18753.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
21003.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11999\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dual specificity mitogen-activated protein kinase kinase 1 (ec 2.7.1.-) (map kinase kinase 1) (mapkk 1) (erk activator kinase 1) (mapk/erk kinase 1) (mek1). [source:swissprot;acc:q02750]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5880.37\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6334.71\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07726\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sodium/potassium-transporting atpase alpha-2 chain precursor (ec 3.6.3.9) (sodium pump 2) (na+/k+ atpase 2). [source:swissprot;acc:p50993]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
214.717\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
219.157\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02068\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1429\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial ribosomal protein l24. [source:refseq;acc:nm\_024540]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
61.2938\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
63.6979\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
serologically defined colon cancer antigen 16. [source:refseq;acc:nm\_006649]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
30308.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
33930.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11949\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
similar to kinase suppressor of ras (fragment). [source:sptrembl;acc:q8ivt5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5880.37\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6334.71\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07726\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
wd repeat domain 26. [source:refseq;acc:nm\_025160]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
213.351\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
217.74\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02057\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1430\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
65 kda yes-associated protein (yap65). [source:swissprot;acc:p46937]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
61.2938\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
63.6979\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial precursor (ec 3.6.1.23) (dutpase) (dutp pyrophosphatase). [source:swissprot;acc:p33316]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
187.114\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
190.925\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02037\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dual specificity mitogen-activated protein kinase kinase 2 (ec 2.7.1.-) (map kinase kinase 2) (mapkk 2) (erk activator kinase 2) (mapk/erk kinase 2) (mek2). [source:swissprot;acc:p36507]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5880.37\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6334.71\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07726\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
histone h4. [source:swissprot;acc:p02304]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
33111\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
29578.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11942\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1431\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
9 kda protein. [source:swissprot;acc:p13994]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
61.2938\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
63.6979\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
limkain beta 2. [source:refseq;acc:nm\_025140]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5796.03\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6243.78\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07725\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
syntaxin 7. [source:swissprot;acc:o15400]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24103.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26981.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11939\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
uv excision repair protein rad23 homolog a (hhr23a). [source:swissprot;acc:p54725]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
220.987\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
225.468\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.02028\vspace{3pt}}}\\\cline{1-2}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1432\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
26s proteasome non-atpase regulatory subunit 4 (26s proteasome regulatory subunit s5a) (rpn10) (multiubiquitin chain binding protein) (antisecretory factor-1) (af) (asf). [source:swissprot;acc:p55036]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
inhibitor of growth family, member 1; inhibitor of growth 1. [source:refseq;acc:nm\_005537]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
19672.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
22020.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11938\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcriptional co-activator with pdz-binding motif (taz). [source:refseq;acc:nm\_015472]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
61.2937\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
63.6977\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03922\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein zic 2 (zinc finger protein of the cerebellum 2). [source:swissprot;acc:o95409]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
5658.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6095.62\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07723\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1433\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna topoisomerase iii alpha (ec 5.99.1.2). [source:swissprot;acc:q13472]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
5692.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6131.71\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07719\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
gamma adducin (adducin-like protein 70). [source:swissprot;acc:q9uey8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.6322\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
63.0093\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03921\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
inositol polyphosphate 5-phosphatase ocrl-1 (ec 3.1.3.36) (lowe's oculocerebrorenal syndrome protein). [source:swissprot;acc:q01968]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
220.987\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
225.468\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02028\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleolar protein nop56 (nucleolar protein 5a). [source:swissprot;acc:o00567]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
14819.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
16587\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11929\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1434\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
inhibitor of growth family, member 1-like; inhibitor of growth 1-like. [source:refseq;acc:nm\_001564]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
19608.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
21947.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11927\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin viia. [source:swissprot;acc:q13402]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5759.68\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6203.63\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07708\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
solute carrier family 4 (anion exchanger), member 1, adaptor protein; kidney anion exchanger adaptor protein; kanadaptin; lung cancer oncogene 3. [source:refseq;acc:nm\_018158]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
86.1912\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
82.9401\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0392\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
uv excision repair protein rad23 homolog b (hhr23b) (xp-c repair complementing complex 58 kda protein) (p58). [source:swissprot;acc:p54727]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
220.987\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
225.468\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02028\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1435\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cyclin-dependent kinases regulatory subunit 2 (cks-2). [source:swissprot;acc:p33552]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
86.1912\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
82.9401\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0392\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial translational release factor 1-like. [source:refseq;acc:nm\_019041]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
21786.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
24380.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11907\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin vi. [source:swissprot;acc:q9um54]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
220.987\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
225.468\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02028\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin-conjugating enzyme e2 b (ec 6.3.2.19) (ubiquitin-protein ligase b) (ubiquitin carrier protein b) (hr6b) (hhr6b) (e2-17 kda). [source:swissprot;acc:p23567]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5759.68\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6203.63\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07708\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1436\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
catenin (cadherin-associated protein), alpha-like 1; alpha-catulin. [source:refseq;acc:nm\_003798]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
86.1912\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
82.9401\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0392\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mannose-p-dolichol utilization defect 1 protein (suppressor of lec15 and lec35 glycosylation mutation homolog) (sl15). [source:swissprot;acc:o75352]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
21782\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
24375.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11906\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
similar to ecotropic viral integration site 5; neuroblastoma stage 4s gene. [source:refseq;acc:nm\_145245]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.829\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
214.493\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02022\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin-conjugating enzyme e2 a (ec 6.3.2.19) (ubiquitin-protein ligase a) (ubiquitin carrier protein a) (hr6a) (hhr6a). [source:swissprot;acc:p49459]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5759.68\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6203.63\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07708\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1437\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ecotropic viral integration site 5; neuroblastoma stage 4s gene. [source:refseq;acc:nm\_005665]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.829\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
214.493\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02022\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glycerol-3-phosphate dehydrogenase, mitochondrial precursor (ec 1.1.99.5) (gpd-m) (gpdh-m). [source:swissprot;acc:p43304]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6089.43\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6558.02\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07695\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
peptide chain release factor 1, mitochondrial precursor (mrf-1). [source:swissprot;acc:o75570]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
21776.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
24369.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11905\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zasp protein (fragment). [source:sptrembl;acc:q9y4z3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
61.2913\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
63.6935\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03919\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1438\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
exocyst complex component sec10 (hsec10). [source:swissprot;acc:o00471]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6721.25\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7238.34\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07693\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
geranylgeranyl transferase type i beta subunit (ec 2.5.1.-) (type i protein geranyl-geranyltransferase beta subunit) (ggtase-i-beta). [source:swissprot;acc:p53609]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
225.039\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
229.573\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02015\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
putative eukaryotic translation initiation factor 3 subunit (eif-3) (fragment). [source:swissprot;acc:o75153]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.0677\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
62.4214\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03918\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
uv excision repair protein rad23 homolog a (hhr23a). [source:swissprot;acc:p54725]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
23913\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
26757.8\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.11896\vspace{3pt}}}\\\cline{1-2}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1439\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
26s proteasome non-atpase regulatory subunit 4 (26s proteasome regulatory subunit s5a) (rpn10) (multiubiquitin chain binding protein) (antisecretory factor-1) (af) (asf). [source:swissprot;acc:p55036]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
camp response element-binding protein cre-bpa. [source:refseq;acc:nm\_004904]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5658.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6093.56\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07683\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
fatty acid desaturase 3; linoleoyl-coa desaturase (delta-6-desaturase)-like 3; delta-6 fatty acid desaturase. [source:refseq;acc:nm\_021727]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
225.039\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
229.573\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02015\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
megf11 protein. [source:refseq;acc:nm\_032445]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.599\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
62.9716\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03915\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1440\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
inositol polyphosphate 5-phosphatase ocrl-1 (ec 3.1.3.36) (lowe's oculocerebrorenal syndrome protein). [source:swissprot;acc:q01968]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
23913\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26757.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11896\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/