Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Value Type Interaction Map description Rank Network Comparison Type Gene red Filtered green network_comparison
Results: HTML CSV LaTeX Showing element 544 to 593 of 3228 in total 
Value Type: Measured
Interaction Map: High confidence
Network Comparison Type: Divided
Filtered: 1

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\def\wcB{0.16666666666667\textwidth}
\def\wcC{0.16666666666667\textwidth}
\def\wcD{0.16666666666667\textwidth}
\def\wcE{0.16666666666667\textwidth}
\begin{longtable}{|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cell adhesion molecule with homology to l1cam precursor; neural cell adhesion molecule; cell adhesion molecule l1-like; l1 cell adhesion molecule 2. [source:refseq;acc:nm\_006614]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1660\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7433.73\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7950.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.06953\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cell division control protein 2 homolog (ec 2.7.1.-) (p34 protein kinase) (cyclin-dependent kinase 1) (cdk1). [source:swissprot;acc:p06493]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
363\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
12780.7\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10876.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.17509\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cell division cycle protein 23; anaphase-promoting complex subunit 8. [source:refseq;acc:nm\_004661]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2387\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
8265.85\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7940.87\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04092\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cell division protein kinase 2 (ec 2.7.1.-) (p33 protein kinase). [source:swissprot;acc:p24941]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
361\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
12787.6\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10880.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.17528\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cell division protein kinase 3 (ec 2.7.1.-). [source:swissprot;acc:q00526]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
359\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
12798.9\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10887.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.17559\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cell division protein kinase 5 (ec 2.7.1.-) (tau protein kinase ii catalytic subunit) (tpkii catalytic subunit) (serine/threonine protein kinase pssalre). [source:swissprot;acc:q00535]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2850\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
cell division protein kinase 8 (ec 2.7.1.-) (protein kinase k35). [source:swissprot;acc:p49336]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2990\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
cell division protein kinase 9 (ec 2.7.1.-) (serine/threonine-protein kinase pitalre) (c-2k). [source:swissprot;acc:p50750]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2974\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cellular modulator of immune recognition. [source:refseq;acc:nm\_145021]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
739\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5768.32\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6434.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.11554\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cellular repressor of e1a-stimulated genes 2. [source:refseq;acc:nm\_153836]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
623\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
6228.39\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
7013.19\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.126\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
cellular repressor of e1a-stimulated genes. [source:refseq;acc:nm\_003851]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
629\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
centaurin beta 1 (cnt-b1). [source:swissprot;acc:q15027]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2123\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5977.03\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6301.76\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.05433\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
centaurin beta 2 (cnt-b2). [source:swissprot;acc:q15057]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2122\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
centaurin beta 5 (cnt-b5). [source:swissprot;acc:q96p50]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2121\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
centaurin gamma 1. [source:swissprot;acc:q99490]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2157\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5701.81\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6000.03\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.0523\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
centaurin gamma 2. [source:swissprot;acc:q9upq3]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2155\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
centaurin gamma 3. [source:swissprot;acc:q96p47]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2158\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
centromere protein j; centrosomal p4.1-associated protein; lyst-interacting protein lip1; lag-3-associated protein. [source:refseq;acc:nm\_018451]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2499\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
8186.02\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7971.27\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02694\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
centromere/kinetochore protein zw10 homolog. [source:swissprot;acc:o43264]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
3167\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cerebral cell adhesion molecule. [source:refseq;acc:nm\_016174]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1747\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
9596.59\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10241.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.06724\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cg9578-like; yeast ypr037w and worm c02c2.6 predicted proteins-like. [source:refseq;acc:nm\_152902]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
900\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4713.58\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4279.17\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10152\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cgi-142; hepatoma-derived growth factor 2. [source:refseq;acc:nm\_016073]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
384\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4533.74\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5279.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.16447\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cgthba protein (-14 gene protein). [source:swissprot;acc:q12980]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2562\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5291.65\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5187.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02002\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
channel associated protein of synapse-110 (chapsyn-110) (discs, large homolog 2). [source:swissprot;acc:q15700]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2085\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5835.4\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6159.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05552\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chaperone-activity of bc1 complex-like, mitochondrial precursor (chaperone-abc1-like). [source:swissprot;acc:q8ni60]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1173\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5799.35\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6305.95\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08735\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
choline dehydrogenase. [source:refseq;acc:nm\_018397]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1556\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5875.75\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6302.76\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07267\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
choline o-acetyltransferase (ec 2.3.1.6) (choactase) (choline acetylase) (chat). [source:swissprot;acc:p28329]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1139\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5790.66\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6303.95\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08864\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cholinephosphate cytidylyltransferase a (ec 2.7.7.15) (phosphorylcholine transferase a) (ctp:phosphocholine cytidylyltransferase a) (ct a) (cct a) (cct-alpha). [source:swissprot;acc:p49585]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1840\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
3591.95\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
3375.34\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.06417\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
cholinephosphate cytidylyltransferase b (ec 2.7.7.15) (phosphorylcholine transferase b) (ctp:phosphocholine cytidylyltransferase b) (ct b) (cct b) (cct-beta). [source:swissprot;acc:q9y5k3]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1846\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chromatin accessibility complex protein 1 (chrac-1) (chrac-15) (huchrac15) (dna polymerase epsilon subunit p15). [source:swissprot;acc:q9nrg0]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
271\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
2554.89\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3093.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.21092\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chromatin assembly factor 1 subunit c (caf-1 subunit c) (chromatin assembly factor i p48 subunit) (caf-i 48 kda subunit) (caf-ip48) (retinoblastoma binding protein p48) (retinoblastoma-binding protein 4) (rbbp-4) (msi1 protein homolog). [source:swissprot;acc:q09028]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
468\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4869.15\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5578.02\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.14558\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chromatin-specific transcription elongation factor large subunit. [source:refseq;acc:nm\_007192]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
958\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4483.26\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4917.77\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09692\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chromobox protein homolog 1 (heterochromatin protein 1 homolog beta) (hp1 beta) (modifier 1 protein) (m31) (heterochromatin protein p25). [source:swissprot;acc:p23197]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2598\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7538.48\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7417.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0163\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chromobox protein homolog 3 (heterochromatin protein 1 homolog gamma) (hp1 gamma) (modifier 2 protein) (hech). [source:swissprot;acc:q13185]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2591\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7550.12\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7422.01\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01726\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chromobox protein homolog 5 (heterochromatin protein 1 homolog alpha) (hp1 alpha) (antigen p25). [source:swissprot;acc:p45973]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2590\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7551.88\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7422.68\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01741\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chromodomain helicase dna binding protein 5. [source:refseq;acc:nm\_015557]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
52\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
779.167\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
1390.33\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.78438\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
chromodomain helicase-dna-binding protein 3 (chd-3) (mi-2 autoantigen 240 kda protein) (mi2-alpha). [source:swissprot;acc:q12873]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
47\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chromodomain protein, y chromosome-like isoform a; cdy-like, autosomal; testis-specific chromodomain y-like protein. [source:refseq;acc:nm\_004824]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1758\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7101.15\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7576.84\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.06699\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chromodomain y-like protein 2. [source:refseq;acc:nm\_152342]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1755\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7101.7\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7577.75\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.06703\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chromosome 11 open reading frame2; chromosome  11 open reading frame2. [source:refseq;acc:nm\_013265]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2214\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5910.12\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6199.28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04893\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chromosome 3p21.1 gene sequence. [source:refseq;acc:nm\_013286]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
274\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3119.98\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
2579.49\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.20953\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cirhin; testis expressed gene 292; cirrhosis, autosomal recessive 1a. [source:refseq;acc:nm\_032830]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
837\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4063.64\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4492.98\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10565\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cisplatin resistance related protein crr9p. [source:refseq;acc:nm\_030782]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
3197\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
clathrin coat assembly protein ap180 (clathrin coat associated protein ap180) (91 kda synaptosomal-associated protein). [source:swissprot;acc:o60641]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2291\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5783.71\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6048.89\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04585\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
clathrin coat assembly protein ap50 (clathrin coat associated protein ap50) (plasma membrane adaptor ap-2 50 kda protein) (ha2 50 kda subunit) (clathrin assembly protein complex 2 medium chain) (ap-2 mu 2 chain). [source:swissprot;acc:p20172]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2675\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7780.98\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7741.14\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00515\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
clathrin heavy chain 1 (clh-17). [source:swissprot;acc:q00610]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2189\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5285.03\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5033.55\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04996\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
clathrin heavy chain 2 (clh-22). [source:swissprot;acc:p53675]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2197\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5285.79\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5036.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04952\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cleavage and polyadenylation specific factor 4, 30kd subunit; cleavage-polyadenylation specificity factor, 30kd; no arches-like (zebrafish) zinc finger protein; cleavage-polyadenylation specificity factor. [source:refseq;acc:nm\_006693]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
262\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
24896.4\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
20431.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.21852\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cleavage and polyadenylation specific factor 5, 25 kd subunit; pre-mrna cleavage factor im (25kd); pre-mrna cleavage factor im, 25kd subunit. [source:refseq;acc:nm\_007006]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1678\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5763.25\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6162.98\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.06936\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cleavage and polyadenylation specific factor 6, 68 kd subunit; pre-mrna cleavage factor im (68kd); cleavage and polyadenylation specific factor 6, 68kd subunit; pre-mrna cleavage factor i, 68kd subunit. [source:refseq;acc:nm\_007007]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1551\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5732.83\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6149.86\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07274\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/