Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Value Type Interaction Map description Rank Network Comparison Type Gene Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 532 to 581 of 3228 in total 
Value Type: Measured
Interaction Map: High confidence
Network Comparison Type: Divided
Filtered: 1

\def\wcA{0.16666666666667\textwidth}
\def\wcB{0.16666666666667\textwidth}
\def\wcC{0.16666666666667\textwidth}
\def\wcD{0.16666666666667\textwidth}
\def\wcE{0.16666666666667\textwidth}
\begin{longtable}{|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
ccr4-not transcription complex, subunit 6-like. [source:refseq;acc:nm\_144571]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2958\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
ccr4-not transcription complex, subunit 7 (ccr4-associated factor 1) (caf1) (btg1 binding factor 1). [source:swissprot;acc:q9uiv1]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
3226\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
ccr4-not transcription complex, subunit 8 (caf1-like protein) (califp). [source:swissprot;acc:q9uff9]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2890\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cd109; gov system alloantigens on platelets. [source:refseq;acc:nm\_133493]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1445\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5117.85\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5510.45\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07671\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cd209 antigen-like; putative type ii membrane protein. [source:refseq;acc:nm\_014257]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2753\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
4521.42\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
4521.87\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.0001\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
cd209 antigen; dendritic cell-specific icam3-grabbing nonintegrin. [source:refseq;acc:nm\_021155]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2755\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cda11 protein. [source:refseq;acc:nm\_032026]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1174\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5874.11\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6387.23\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08735\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cdc42 guanine exchange factor 9; hpem-2 collybistin. [source:refseq;acc:nm\_015185]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1995\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6174.74\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6538.73\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05895\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cdc42-interacting protein 4 (thyroid receptor interacting protein 10) (trip-10). [source:swissprot;acc:q15642]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1611\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5497.73\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5132.35\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07119\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cdc5-like; cdc5 (cell division cycle 5, s. pombe, homolog)-like; cell division cycle 5, s. pombe, homolog-like; cdc5-related protein. [source:refseq;acc:nm\_001253]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
419\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5493.1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6350.19\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.15603\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cdk-activating kinase assembly factor mat1 (ring finger protein mat1) (menage a trois) (cdk7/cyclin h assembly factor) (p36) (p35) (cyclin g1 interacting protein). [source:swissprot;acc:p51948]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
3209\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cdp-diacylglycerol--inositol 3-phosphatidyltransferase (ec 2.7.8.11) (phosphatidylinositol synthase) (ptdins synthase) (pi synthase). [source:swissprot;acc:o14735]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
981\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6654.42\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7296.51\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09649\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cell adhesion molecule with homology to l1cam precursor; neural cell adhesion molecule; cell adhesion molecule l1-like; l1 cell adhesion molecule 2. [source:refseq;acc:nm\_006614]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1660\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7433.73\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7950.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.06953\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cell division control protein 2 homolog (ec 2.7.1.-) (p34 protein kinase) (cyclin-dependent kinase 1) (cdk1). [source:swissprot;acc:p06493]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
363\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
12780.7\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10876.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.17509\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cell division cycle protein 23; anaphase-promoting complex subunit 8. [source:refseq;acc:nm\_004661]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2387\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
8265.85\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7940.87\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04092\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cell division protein kinase 2 (ec 2.7.1.-) (p33 protein kinase). [source:swissprot;acc:p24941]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
361\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
12787.6\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10880.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.17528\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cell division protein kinase 3 (ec 2.7.1.-). [source:swissprot;acc:q00526]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
359\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
12798.9\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10887.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.17559\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cell division protein kinase 5 (ec 2.7.1.-) (tau protein kinase ii catalytic subunit) (tpkii catalytic subunit) (serine/threonine protein kinase pssalre). [source:swissprot;acc:q00535]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2850\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
cell division protein kinase 8 (ec 2.7.1.-) (protein kinase k35). [source:swissprot;acc:p49336]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2990\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
cell division protein kinase 9 (ec 2.7.1.-) (serine/threonine-protein kinase pitalre) (c-2k). [source:swissprot;acc:p50750]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2974\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cellular modulator of immune recognition. [source:refseq;acc:nm\_145021]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
739\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5768.32\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6434.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.11554\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cellular repressor of e1a-stimulated genes 2. [source:refseq;acc:nm\_153836]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
623\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
6228.39\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
7013.19\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.126\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
cellular repressor of e1a-stimulated genes. [source:refseq;acc:nm\_003851]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
629\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
centaurin beta 1 (cnt-b1). [source:swissprot;acc:q15027]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2123\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5977.03\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6301.76\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.05433\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
centaurin beta 2 (cnt-b2). [source:swissprot;acc:q15057]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2122\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
centaurin beta 5 (cnt-b5). [source:swissprot;acc:q96p50]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2121\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
centaurin gamma 1. [source:swissprot;acc:q99490]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2157\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5701.81\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6000.03\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.0523\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
centaurin gamma 2. [source:swissprot;acc:q9upq3]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2155\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
centaurin gamma 3. [source:swissprot;acc:q96p47]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2158\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
centromere protein j; centrosomal p4.1-associated protein; lyst-interacting protein lip1; lag-3-associated protein. [source:refseq;acc:nm\_018451]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2499\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
8186.02\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7971.27\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02694\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
centromere/kinetochore protein zw10 homolog. [source:swissprot;acc:o43264]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
3167\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cerebral cell adhesion molecule. [source:refseq;acc:nm\_016174]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1747\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
9596.59\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10241.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.06724\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cg9578-like; yeast ypr037w and worm c02c2.6 predicted proteins-like. [source:refseq;acc:nm\_152902]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
900\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4713.58\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4279.17\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10152\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cgi-142; hepatoma-derived growth factor 2. [source:refseq;acc:nm\_016073]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
384\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4533.74\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5279.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.16447\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cgthba protein (-14 gene protein). [source:swissprot;acc:q12980]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2562\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5291.65\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5187.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02002\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
channel associated protein of synapse-110 (chapsyn-110) (discs, large homolog 2). [source:swissprot;acc:q15700]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2085\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5835.4\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6159.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05552\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chaperone-activity of bc1 complex-like, mitochondrial precursor (chaperone-abc1-like). [source:swissprot;acc:q8ni60]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1173\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5799.35\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6305.95\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08735\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
choline dehydrogenase. [source:refseq;acc:nm\_018397]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1556\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5875.75\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6302.76\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07267\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
choline o-acetyltransferase (ec 2.3.1.6) (choactase) (choline acetylase) (chat). [source:swissprot;acc:p28329]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1139\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5790.66\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6303.95\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08864\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
cholinephosphate cytidylyltransferase a (ec 2.7.7.15) (phosphorylcholine transferase a) (ctp:phosphocholine cytidylyltransferase a) (ct a) (cct a) (cct-alpha). [source:swissprot;acc:p49585]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1840\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
3591.95\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
3375.34\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.06417\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
cholinephosphate cytidylyltransferase b (ec 2.7.7.15) (phosphorylcholine transferase b) (ctp:phosphocholine cytidylyltransferase b) (ct b) (cct b) (cct-beta). [source:swissprot;acc:q9y5k3]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1846\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chromatin accessibility complex protein 1 (chrac-1) (chrac-15) (huchrac15) (dna polymerase epsilon subunit p15). [source:swissprot;acc:q9nrg0]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
271\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
2554.89\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3093.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.21092\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chromatin assembly factor 1 subunit c (caf-1 subunit c) (chromatin assembly factor i p48 subunit) (caf-i 48 kda subunit) (caf-ip48) (retinoblastoma binding protein p48) (retinoblastoma-binding protein 4) (rbbp-4) (msi1 protein homolog). [source:swissprot;acc:q09028]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
468\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4869.15\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5578.02\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.14558\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chromatin-specific transcription elongation factor large subunit. [source:refseq;acc:nm\_007192]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
958\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4483.26\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4917.77\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09692\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chromobox protein homolog 1 (heterochromatin protein 1 homolog beta) (hp1 beta) (modifier 1 protein) (m31) (heterochromatin protein p25). [source:swissprot;acc:p23197]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2598\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7538.48\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7417.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0163\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chromobox protein homolog 3 (heterochromatin protein 1 homolog gamma) (hp1 gamma) (modifier 2 protein) (hech). [source:swissprot;acc:q13185]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2591\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7550.12\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7422.01\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01726\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chromobox protein homolog 5 (heterochromatin protein 1 homolog alpha) (hp1 alpha) (antigen p25). [source:swissprot;acc:p45973]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2590\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7551.88\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7422.68\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01741\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chromodomain helicase dna binding protein 5. [source:refseq;acc:nm\_015557]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
52\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
779.167\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
1390.33\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.78438\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
chromodomain helicase-dna-binding protein 3 (chd-3) (mi-2 autoantigen 240 kda protein) (mi2-alpha). [source:swissprot;acc:q12873]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
47\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
chromodomain protein, y chromosome-like isoform a; cdy-like, autosomal; testis-specific chromodomain y-like protein. [source:refseq;acc:nm\_004824]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1758\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7101.15\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7576.84\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.06699\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/