Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
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Rank Gene Hugo description Network Comparison Type Value Type Interaction Map Filtered red network_comparison green
Results: HTML CSV LaTeX
Showing element 530 to 579 of 33156 in total
Network Comparison Type: Divided
Filtered: 1

\def\wcA{0.11111111111111\textwidth}
\def\wcB{0.11111111111111\textwidth}
\def\wcC{0.11111111111111\textwidth}
\def\wcD{0.11111111111111\textwidth}
\def\wcE{0.11111111111111\textwidth}
\def\wcF{0.11111111111111\textwidth}
\def\wcG{0.11111111111111\textwidth}
\def\wcH{0.11111111111111\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
green\vspace{3pt}}\\
\hline
\hline
\multirow{7}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
67\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
GNAT2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(t), alpha-2 subunit (transducin alpha-2 chain). [source:swissprot;acc:p19087]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
267.14\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.25805\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
336.075\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAGEA8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
melanoma-associated antigen 8 (mage-8 antigen). [source:swissprot;acc:p43361]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
219048\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.68808\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
129762\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MYO15A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
myosin xv (unconventional myosin-15). [source:swissprot;acc:q9ukn7]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
63.8686\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.35128\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
47.2654\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
NFU1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
hira-interacting protein 5 (cgi-33). [source:swissprot;acc:q9ums0]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
12176.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.1318\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
13781.8\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SEPT6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
septin 6. [source:swissprot;acc:q14141]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
74378.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.25751\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
93531.9\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
T\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
brachyury protein (t protein). [source:swissprot;acc:o15178]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
61.687\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10559\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
68.2003\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
UBR4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
retinoblastoma-associated factor 600. [source:refseq;acc:nm\_020765]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
165.535\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10505\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
149.799\vspace{3pt}}\\\cline{1-3}\cline{6-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
68\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l37a. [source:swissprot;acc:p12751]\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
239.692\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10455\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
217.005\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ARRB1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
beta-arrestin 1 (arrestin, beta 1). [source:swissprot;acc:p49407]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
6475.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.59177\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10307.5\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
GNAZ\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(z), alpha subunit (g(x) alpha chain) (gz-alpha). [source:swissprot;acc:p19086]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
267.139\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.25805\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
336.075\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAGEC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
melanoma-associated antigen c1 (mage-c1 antigen) (cancer-testis antigen ct7). [source:swissprot;acc:o60732]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
219048\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.68808\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
129762\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PYGM\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
glycogen phosphorylase, muscle form (ec 2.4.1.1) (myophosphorylase). [source:swissprot;acc:p11217]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
63.8686\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.35128\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
47.2654\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
RASAL2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ras gtpase-activating protein ngap (ras protein activator like 1). [source:swissprot;acc:q9ujf2]\vspace{3pt}}&&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
55.9786\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10514\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
61.8641\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
UBAC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
putative glialblastoma cell differentiation-related; putative glialblastoma cell differentiation-related protein. [source:refseq;acc:nm\_016172]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
19498.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.12932\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
17265.4\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
UBR4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
retinoblastoma-associated factor 600. [source:refseq;acc:nm\_020765]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
27909.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.25653\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
35068.7\vspace{3pt}}\\\cline{1-3}\cline{6-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
69\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ALDH4A1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial precursor (ec 1.5.1.12) (p5c dehydrogenase). [source:swissprot;acc:p30038]\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
80538.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.25465\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
64191.7\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
APBA1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
amyloid beta a4 precursor protein-binding family a member 1 (neuron- specific x11 protein) (neuronal munc18-1-interacting protein 1) (mint-1) (adapter protein x11alpha). [source:swissprot;acc:q02410]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
60.7884\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10405\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
67.1136\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
GNAT1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(t), alpha-1 subunit (transducin alpha-1 chain). [source:swissprot;acc:p11488]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
267.14\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.25805\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
336.075\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAGEA4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
melanoma-associated antigen 12 (mage-12 antigen) (mage12f). [source:swissprot;acc:p43365]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
219048\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.68808\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
129762\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
NEUROD2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
neurogenic differentiation factor 2 (neurod2). [source:swissprot;acc:q15784]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
27.9136\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.33581\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
37.2872\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SLC7A13\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
amino acid transporter xat2; likely ortholog of mouse aspartate/glutamate transporter 1 (agt1). [source:refseq;acc:nm\_138817]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6991.78\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.12253\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7848.45\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SPATA6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
spermatogenesis associated 6. [source:refseq;acc:nm\_019073]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
6475.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.59177\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10307.5\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
TEX28P2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
testis-specific protein tex28. [source:swissprot;acc:o15482]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
259.517\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10425\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
235.017\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
70\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
melanoma-associated antigen 1 (mage-1 antigen) (antigen mz2-e). [source:swissprot;acc:p43355]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
219048\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.68808\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
129762\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
AMPD2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
amp deaminase 2 (ec 3.5.4.6) (amp deaminase isoform l). [source:swissprot;acc:q01433]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
6475.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.59177\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10307.5\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CHD3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
chromodomain helicase-dna-binding protein 3 (chd-3) (mi-2 autoantigen 240 kda protein) (mi2-alpha). [source:swissprot;acc:q12873]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
27.9136\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.33581\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
37.2872\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
GNAI2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i), alpha-2 subunit (adenylate cyclase-inhibiting g alpha protein). [source:swissprot;acc:p04899]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
267.142\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.25804\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
336.074\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
GOSR2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
27 kda golgi snare protein (golgi snap receptor complex member 2) (membrin). [source:swissprot;acc:o14653]\vspace{3pt}}&&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
259.517\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10425\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
235.017\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PLAA\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
phospholipase a-2-activating protein (plap) (pla2p). [source:swissprot;acc:q9y263]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
80538.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.25465\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
64191.7\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SLC7A7\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
y+l amino acid transporter 1 (y(+)l-type amino acid transporter 1) (y+lat-1) (y+lat1) (monocyte amino acid permease 2) (mop-2). [source:swissprot;acc:q9um01]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
6991.78\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.12253\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7848.45\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
TFDP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
transcription factor dp-2 (e2f dimerization partner 2). [source:swissprot;acc:q14188]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
61.9982\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10058\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
68.2337\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
71\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
cysteine-rich protein 1 (cysteine-rich intestinal protein) (crip) (cysteine-rich heart protein) (hcrhp). [source:swissprot;acc:p50238]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
230.944\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10421\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
209.149\vspace{3pt}}\\\cline{3-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 55 kda regulatory subunit b, alpha isoform (pp2a, subunit b, b-alpha isoform) (pp2a, subunit b, b55-alpha isoform) (pp2a, subunit b, pr55-alpha isoform) (pp2a, subunit b, r2-alpha isoform). [source:swissprot;acc:q00007]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
4556.78\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.54716\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2945.26\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ARAF\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
a-raf proto-oncogene serine/threonine-protein kinase (ec 2.7.1.-) (a-raf-1) (proto-oncogene pks). [source:swissprot;acc:p10398]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
63411.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24169\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
51068.8\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
CDK2AP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
doc-1 related protein (doc-1r). [source:swissprot;acc:o75956]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
27.9136\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.33581\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
37.2872\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
GNAI1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(i), alpha-1 subunit (adenylate cyclase-inhibiting g alpha protein). [source:swissprot;acc:p04898]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
267.144\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.25802\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
336.073\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAGEA10\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
melanoma-associated antigen 10 (mage-10 antigen). [source:swissprot;acc:p43363]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
219048\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.68808\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
129762\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SLC7A11\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
cystine/glutamate transporter (amino acid transport system xc-) (xct) (calcium channel blocker resistance protein ccbr1). [source:swissprot;acc:q9upy5]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
6991.78\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.12253\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7848.45\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
TAF2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tbp-associated factor 2; taf2 rna polymerase ii, tata box binding protein (tbp)-associated factor, 150 kd; tata box binding protein (tbp)-associated factor, rna polymerase ii, b, 150kd; cofactor of initiator function, 150kd subunit. [source:refseq;acc:nm\_003184]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
59.6397\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10048\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
65.6325\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
72\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
GNAI3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
guanine nucleotide-binding protein g(k), alpha subunit (g(i) alpha-3). [source:swissprot;acc:p08754]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
267.144\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.25802\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
336.073\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAGEB4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
melanoma-associated antigen b1 (mage-b1 antigen) (mage-xp antigen) (dss-ahc critical interval mage superfamily 10) (dam10). [source:swissprot;acc:p43366]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
219048\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.68808\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
129762\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MTUS1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mitochondrial tumor suppressor gene 1; transcription factor mtsg1; at2 receptor-interacting protein 1; erythroid differentiation-related gene. [source:refseq;acc:nm\_020749]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
63.1259\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09987\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
69.4305\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
NEUROD6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
neurogenic differentiation factor 6 (neurod6) (my051 protein). [source:swissprot;acc:q96nk8]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
27.9136\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.33581\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
37.2872\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PPP2R2D\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
uncharacterized hematopoietic stem/progenitor cells protein mds026. [source:sptrembl;acc:q9nz48]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
4556.79\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.54715\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2945.28\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
RAF1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
raf proto-oncogene serine/threonine-protein kinase (ec 2.7.1.-) (raf-1) (c-raf). [source:swissprot;acc:p04049]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
63404.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24163\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
51065.9\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SLC7A6\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
solute carrier family 7 (cationic amino acid transporter, y+ system), member 6. [source:refseq;acc:nm\_003983]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
6991.78\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.12253\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7848.45\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SMYD2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
set and mynd domain containing 2; hskm-b protein; zinc finger, mynd domain containing 14. [source:refseq;acc:nm\_020197]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
230.944\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10421\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
209.149\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{3}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
73\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
CPN2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
carboxypeptidase n 83 kda chain (carboxypeptidase n regulatory subunit) (fragment). [source:swissprot;acc:p22792]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
63279.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.24046\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
51013.1\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
EIF4B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 4b (eif-4b). [source:swissprot;acc:p23588]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
6991.78\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.12253\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7848.45\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
JPH3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
junctophilin 3 (junctophilin type 3) (jp-3). [source:swissprot;acc:q8wxh2]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
288\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.25694\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
362\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/