Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Gene Rank description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 51 to 100 of 29840 in total 
Interaction Map: High confidence

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\def\wcB{0.11111111111111\textwidth}
\def\wcC{0.11111111111111\textwidth}
\def\wcD{0.11111111111111\textwidth}
\def\wcE{0.11111111111111\textwidth}
\def\wcF{0.11111111111111\textwidth}
\def\wcG{0.11111111111111\textwidth}
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\begin{longtable}{|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Filtered\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{14}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
4\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytohesin 4. [source:swissprot;acc:q9uia0]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
41482.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
33356.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
8126\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8}
&\multirow{4}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
hbs1-like. [source:refseq;acc:nm\_006620]\vspace{3pt}}}&&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
2597.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
698.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3.71868\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
1596.92\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
115.48\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
13.8285\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
50.9657\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcG}{\vspace{3pt}\noindent
26.4292\vspace{3pt}}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.92839\vspace{3pt}}\\\cline{4-4}\cline{8-8}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&&&\parbox{\wcH}{\vspace{3pt}\noindent
24.5365\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-c4 (hox-3e) (cp19). [source:swissprot;acc:p09017]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
89\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
8900000\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial 28s ribosomal protein s32 (s32mt) (mrp-s32) (ptd007) (hspc204). [source:swissprot;acc:q9y6g3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
8906\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
21883\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.45711\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
mln 64 protein (star-related lipid transfer protein 3) (stard3) (start domain-containing protein 3) (cab1 protein). [source:swissprot;acc:q14849]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
29.3087\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7.61577\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
21.6929\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear receptor co-repressor/hdac3 complex subunit tblr1 (tbl1- related protein 1). [source:swissprot;acc:q9bzk7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
11525\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
21888\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10363\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
pyridoxine 5'-phosphate oxidase. [source:refseq;acc:nm\_018129]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
2.81207\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
281207\vspace{3pt}}\\\cline{3-3}\cline{7-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&&\parbox{\wcG}{\vspace{3pt}\noindent
10.4403\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1044030\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
rho-related btb domain-containing protein 2 (deleted in breast cancer 2 gene protein) (p83). [source:swissprot;acc:q9byz6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
337\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
232\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
105\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
similar to zinc finger protein 277. [source:sptrembl;acc:q8wwa6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
75446.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
105900\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
30453.3\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein e (snrnp-e) (sm protein e) (sm-e) (sme). [source:swissprot;acc:p08578]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
18704\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
21730\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3026\vspace{3pt}}\\\cline{1-3}\cline{5-8}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
5\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
28s ribosomal protein s17, mitochondrial precursor (mrp-s17) (hspc011). [source:swissprot;acc:q9y2r5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
145.551\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
168.796\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
23.245\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
cytohesin 3 (arf nucleotide-binding site opener 3) (arno3 protein) (general receptor of phosphoinositides 1) (grp1). [source:swissprot;acc:o43739]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
41482.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
33356.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
8126\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
cytohesin 4. [source:swissprot;acc:q9uia0]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
28\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}\\\cline{3-4}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
407289\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
263351\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
143938\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
histone h4. [source:swissprot;acc:p02304]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
21773.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
24446.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2673.2\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-c4 (hox-3e) (cp19). [source:swissprot;acc:p09017]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.87479\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
187479\vspace{3pt}}\\\cline{3-3}\cline{7-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&&\parbox{\wcG}{\vspace{3pt}\noindent
9.43398\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
943398\vspace{3pt}}\\\cline{2-3}\cline{7-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-c6 (hox-3c) (hho.c8) (cp25). [source:swissprot;acc:p09630]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&&&\parbox{\wcG}{\vspace{3pt}\noindent
89\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
8900000\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
junctophilin 3 (junctophilin type 3) (jp-3). [source:swissprot;acc:q8wxh2]\vspace{3pt}}}&&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
339.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
314.926\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
27.2805\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
11.544\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
33.9632\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
18.4255\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.84327\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial 28s ribosomal protein s32 (s32mt) (mrp-s32) (ptd007) (hspc204). [source:swissprot;acc:q9y6g3]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
19.0788\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
19.0788\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
transducin beta-like 1y protein (transducin-beta-like 1, y-linked). [source:swissprot;acc:q9bq87]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
11525\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
21888\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10363\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin-like protein smt3b (sentrin 2) (hsmt3). [source:swissprot;acc:p55855]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
5510.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
11965.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.17144\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
xpa binding protein 1; mbd2 interactor protein; putative atp(gtp)-binding protein. [source:refseq;acc:nm\_007266]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
212\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
309\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
97\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 277. [source:swissprot;acc:q9nrm2]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
75446.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
105900\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
30453.3\vspace{3pt}}\\\cline{1-2}\cline{6-8}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
6\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ataxin 2; olivopontocerebellar ataxia 2, autosomal dominant. [source:refseq;acc:nm\_002973]\vspace{3pt}}&&&&\parbox{\wcF}{\vspace{3pt}\noindent
73080.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
102814\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
29733.2\vspace{3pt}}\\\cline{2-8}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
cytohesin 3 (arf nucleotide-binding site opener 3) (arno3 protein) (general receptor of phosphoinositides 1) (grp1). [source:swissprot;acc:o43739]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
15\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
28\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.86667\vspace{3pt}}\\\cline{3-4}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
407289\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
263351\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
143938\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-a4 (hox-1d) (hox-1.4). [source:swissprot;acc:q00056]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
89\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
8900000\vspace{3pt}}\\\cline{2-3}\cline{7-8}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-c6 (hox-3c) (hho.c8) (cp25). [source:swissprot;acc:p09630]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&&&\parbox{\wcG}{\vspace{3pt}\noindent
1.87479\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
187479\vspace{3pt}}\\\cline{3-3}\cline{7-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&&\parbox{\wcG}{\vspace{3pt}\noindent
9.43398\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
943398\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
junctophilin 2 (junctophilin type 2) (jp-2). [source:swissprot;acc:q9br39]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
1153.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
339.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3.39764\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
314.926\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
27.2805\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
11.544\vspace{3pt}}\\\cline{3-3}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
33.9632\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
18.4255\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.84327\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
mln 64 protein (star-related lipid transfer protein 3) (stard3) (start domain-containing protein 3) (cab1 protein). [source:swissprot;acc:q14849]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
5865\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
14977\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
9112\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
pantothenate kinase 1 (ec 2.7.1.33) (pantothenic acid kinase 1) (hpank1) (hpank). [source:swissprot;acc:q8te04]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
145.551\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
168.796\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
23.245\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
potential phospholipid-transporting atpase iia (ec 3.6.1.-). [source:swissprot;acc:o75110]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
12.1655\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
27.8029\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
15.6374\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein x 0004. [source:refseq;acc:nm\_016301]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
212\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
309\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
97\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
putative glialblastoma cell differentiation-related; putative glialblastoma cell differentiation-related protein. [source:refseq;acc:nm\_016172]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
44490.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
36927.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7563\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
similar to zinc finger protein 277. [source:sptrembl;acc:q8wwa6]\vspace{3pt}}&&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
13174.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
15605.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2430.4\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin protein ligase. [source:refseq;acc:nm\_130466]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
7523\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
15339.2\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.03897\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
7\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
28s ribosomal protein s17, mitochondrial precursor (mrp-s17) (hspc011). [source:swissprot;acc:q9y2r5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
21185\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
28492\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7307\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
cab2. [source:refseq;acc:nm\_033419]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
21866\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10950\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.99689\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hlx1 (homeobox protein hb24). [source:swissprot;acc:q14774]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
215\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
322\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.49767\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein hox-a4 (hox-1d) (hox-1.4). [source:swissprot;acc:q00056]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.87479\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
187479\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/