Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
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Rank Gene Hugo Value Type description Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX
Showing element 4941 to 4990 of 66312 in total
Filtered: 1

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\def\wcB{0.1\textwidth}
\def\wcC{0.1\textwidth}
\def\wcD{0.1\textwidth}
\def\wcE{0.1\textwidth}
\def\wcF{0.1\textwidth}
\def\wcG{0.1\textwidth}
\def\wcH{0.1\textwidth}
\def\wcI{0.1\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
309\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
RAB26\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
ras-related protein rab-26. [source:swissprot;acc:q9ulw5]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10765.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10174.7\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.05803\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
SEC61A2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
protein transport protein sec61 alpha subunit isoform 2 (sec61 alpha- 2). [source:swissprot;acc:q9y2r3]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
242.153\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
266.673\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.10126\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
SMOC2\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
secreted modular calcium-binding protein 2; smooth muscle associated protein 2. [source:refseq;acc:nm\_022138]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
70.2592\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
74.0161\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
3.7569\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
SOAT2\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
sterol o-acyltransferase 2 (ec 2.3.1.26) (cholesterol acyltransferase 2) (acyl coenzyme a:cholesterol acyltransferase 2) (acat-2). [source:swissprot;acc:o75908]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
69.5565\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
73.2539\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.05316\vspace{3pt}}\\\hline
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
310\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
1-acyl-sn-glycerol-3-phosphate acyltransferase alpha (ec 2.3.1.51) (1- agp acyltransferase 1) (1-agpat 1) (lysophosphatidic acid acyltransferase-alpha) (lpaat-alpha) (1-acylglycerol-3-phosphate o- acyltransferase 1) (g15 protein). [source:swissprot;acc:q99943]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
7551.8\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
8630.06\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1078.26\vspace{3pt}}\\\cline{3-5}\cline{7-9}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
myosin heavy chain, cardiac muscle alpha isoform (myhc-alpha). [source:swissprot;acc:p13533]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
C15orf15\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
ribosomal protein l24-like; 60s ribosomal protein l30 isolog; my024 protein; homolog of yeast ribosomal like protein 24. [source:refseq;acc:nm\_016304]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
30651.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
38253.3\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
7602\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
CHDH\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
choline dehydrogenase. [source:refseq;acc:nm\_018397]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
70.2592\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
74.0161\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
3.7569\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
CPEB4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
cytoplasmic polyadenylation element binding protein 4. [source:refseq;acc:nm\_030627]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
4630.13\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5102.14\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
472.01\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
CUTL2\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
homeobox protein cux-2 (cut-like 2) (fragment). [source:swissprot;acc:o14529]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
28901.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
36762.1\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.27198\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
DPM1\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
dolichol-phosphate mannosyltransferase (ec 2.4.1.83) (dolichol- phosphate mannose synthase) (dolichyl-phosphate beta-d- mannosyltransferase) (mannose-p-dolichol synthase) (mpd synthase) (dpm synthase). [source:swissprot;acc:o60762]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
49517.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
45817.4\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
3699.9\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
HTRA1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
serine protease htra1 precursor (ec 3.4.21.-) (l56). [source:swissprot;acc:q92743]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
72.0177\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
75.8419\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.0531\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
HTRA2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
serine protease htra2, mitochondrial precursor (ec 3.4.21.-) (high temperature requirement protein a2) (htra2) (omi stress-regulated endoprotease) (serine proteinase omi). [source:swissprot;acc:o43464]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
7945.12\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
8406.1\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.05802\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAGEF1\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
melanoma-associated antigen f1 (mage-f1 antigen). [source:swissprot;acc:q9hay2]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
88.2482\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
110.265\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
22.0168\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
NDUFA9\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
nadh-ubiquinone oxidoreductase 39 kda subunit, mitochondrial precursor (ec 1.6.5.3) (ec 1.6.99.3) (complex i-39kd) (ci-39kd). [source:swissprot;acc:q16795]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
205.75\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
197.484\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.04186\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
SART1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
squamous cell carcinoma antigen recognized by t cells 1; u4/u6.u5 tri-snrnp-associated 110 kda protein; ige autoantigen; sart1(259) protein; sart1(800) protein. [source:refseq;acc:nm\_005146]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
4909.79\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5878.79\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.19736\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
SEC61A1\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
protein transport protein sec61 alpha subunit isoform 1 (sec61 alpha- 1). [source:swissprot;acc:p38378]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
242.153\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
266.673\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.10126\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
SNRPF\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein f (snrnp-f) (sm protein f) (sm-f) (smf). [source:swissprot;acc:q15356]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
202.122\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
193.867\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
8.255\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
TXNL4A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
spliceosomal u5 snrnp-specific 15 kda protein (dim1 protein homolog) (thioredoxin-like u5 snrnp protein u5-15kd). [source:swissprot;acc:o14834]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
56.9506\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
64.7888\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
7.8382\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
UBE2I\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
ubiquitin-like protein sumo-1 conjugating enzyme (ec 6.3.2.19) (sumo- 1-protein ligase) (ubiquitin carrier protein) (ubiquitin-conjugating enzyme ubce2a) (p18). [source:swissprot;acc:p50550]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
59360.2\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
64250.6\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.08239\vspace{3pt}}\\\cline{1-5}\cline{7-9}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
311\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
transcription factor dp-1 (e2f dimerization partner 1) (drtf1- polypeptide-1) (drtf1). [source:swissprot;acc:q14186]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
6557.13\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7028.46\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
471.33\vspace{3pt}}\\\cline{3-4}\cline{6-9}
&&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
40s ribosomal protein s28. [source:swissprot;acc:p25112]\vspace{3pt}}&&\multirow{5}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
30682.9\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
38183.6\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
7500.7\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
AGPAT4\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
1-acyl-sn-glycerol-3-phosphate acyltransferase delta (ec 2.3.1.51) (1- agp acyltransferase 4) (1-agpat 4) (lysophosphatidic acid acyltransferase-delta) (lpaat-delta) (1-acylglycerol-3-phosphate o- acyltransferase 4). [source:swissprot;acc:q9nrz5]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
30566.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
38866.5\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.27154\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
APBA1\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
amyloid beta a4 precursor protein-binding family a member 1 (neuron- specific x11 protein) (neuronal munc18-1-interacting protein 1) (mint-1) (adapter protein x11alpha). [source:swissprot;acc:q02410]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
2820.51\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3897.1\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1076.59\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
DVL3\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
segment polarity protein dishevelled homolog dvl-3 (dishevelled-3) (dsh homolog 3). [source:swissprot;acc:q92997]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
4981.52\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5964.58\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.19734\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
EIF1B\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
protein translation factor sui1 homolog gc20. [source:swissprot;acc:o60739]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
242.627\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
267.151\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.10108\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
EXOC7\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
exocyst complex component exo70. [source:swissprot;acc:q9upt5]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
204.124\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
212.339\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
8.215\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAGEB6B\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
melanoma antigen, family b, 6. [source:refseq;acc:nm\_173523]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
88.2482\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
110.265\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
22.0168\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
MYH4\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
myosin heavy chain, skeletal muscle, fetal (myosin heavy chain iib) (myhc-iib). [source:swissprot;acc:q9y623]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
NFYA\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
ccaat-binding transcription factor subunit b (cbf-b) (nf-y protein chain a) (nf-ya) (caat-box dna binding protein subunit a). [source:swissprot;acc:p23511]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
67.8224\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
71.5783\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
3.7559\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
NUBP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
nucleotide-binding protein 1 (nbp 1). [source:swissprot;acc:p53384]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
7398.26\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7826.48\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.05788\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
RRM2B\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
ribonucleotide reductase m2 b (tp53 inducible); p53-inducible ribonucleotide reductase small subunit 2 homolog. [source:refseq;acc:nm\_015713]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
62.3337\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
70.0738\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
7.7401\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
SOAT1\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
sterol o-acyltransferase 1 (ec 2.3.1.26) (cholesterol acyltransferase 1) (acyl coenzyme a:cholesterol acyltransferase 1) (acat-1). [source:swissprot;acc:p35610]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
69.568\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
73.2622\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.0531\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
TH\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
tyrosine 3-monooxygenase (ec 1.14.16.2) (tyrosine 3-hydroxylase) (th). [source:swissprot;acc:p07101]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
50786.2\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
47088.3\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
3697.9\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
UBE1C\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
ubiquitin-activating enzyme e1c (uba3 homolog, yeast); ubiquitin-activating enzyme e1c (homologous to yeast uba3). [source:refseq;acc:nm\_003968]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
192.088\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
184.374\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.04184\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
WDR68\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
wd-repeat protein an11 homolog. [source:swissprot;acc:o15491]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
49674.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
45895.5\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.08234\vspace{3pt}}\\\cline{1-4}\cline{6-9}
\multirow{14}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
312\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
u6 snrna-associated sm-like protein lsm7. [source:swissprot;acc:q9uk45]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
4598.21\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5500.48\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.19622\vspace{3pt}}\\\cline{3-5}\cline{7-9}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
melanoma-associated antigen 4 (mage-4 antigen) (mage-x2) (mage-41). [source:swissprot;acc:p43358]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
88.2482\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
110.265\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
22.0168\vspace{3pt}}\\\cline{3-5}\cline{7-9}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
methyltransferase like 2. [source:refseq;acc:nm\_018396]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
71576.8\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
56326.7\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.27074\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
BACH1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
transcription regulator protein bach1 (btb and cnc homolog 1) (ha2303). [source:swissprot;acc:o14867]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
172.647\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
164.44\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
8.207\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
BICD2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
coiled-coil protein bicd2; homolog of drosophila bicaudal d. [source:refseq;acc:nm\_015250]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
7696.96\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
8141.6\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.05777\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
DNALI1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
axonemal dynein light intermediate polypeptide 1 (inner dynein arm light chain, axonemal) (hp28). [source:swissprot;acc:o14645]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
33044.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
40524.8\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
7480.5\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
FBXO9\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
f-box only protein 9. [source:swissprot;acc:q9uk97]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
9028.53\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
9499.15\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
470.62\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
FTSJ3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
ftsj homolog 3; likely ortholog of mouse ectoplacental cone, invasive trophoblast giant cells, extraembryonic ectoderm and chorion sequence 3. [source:refseq;acc:nm\_017647]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
50189.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
46383.9\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.08204\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAX\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
max protein. [source:swissprot;acc:p25912]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
4640.26\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5704.87\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1064.61\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
MYH8\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
myosin heavy chain, skeletal muscle, perinatal (myhc-perinatal). [source:swissprot;acc:p13535]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
NFYC\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
nuclear transcription factor y subunit gamma (nf-y protein chain c) (nuclear factor yc) (nf-yc) (ccaat-binding transcription factor subunit c) (cbf-c) (transactivator hsm-1/2). [source:swissprot;acc:q13952]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
68.4997\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
72.2554\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
3.7557\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
NOSTRIN\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
nostrin. [source:refseq;acc:nm\_052946]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
59.6399\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
51.9242\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
7.7157\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
RNF10\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
ring finger protein 10. [source:refseq;acc:nm\_014868]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
69.5675\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
73.2618\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.0531\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
RPL3L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
60s ribosomal protein l3-like. [source:swissprot;acc:q92901]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
242.195\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
266.663\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.10103\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/