Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 4914 to 4963 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{3}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1229\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
atp-dependent rna helicase ddx24 (dead-box protein 24). [source:swissprot;acc:q9gzr7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
12847.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
14588.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13551\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
beta-centractin (actin-related protein 1b) (arp1b). [source:swissprot;acc:p42025]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
59.226\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
61.9163\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04542\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glutamate--cysteine ligase catalytic subunit (ec 6.3.2.2) (gamma- glutamylcysteine synthetase) (gamma-ecs) (gcs heavy chain). [source:swissprot;acc:p48506]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
213.079\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
218.325\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02462\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1230\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dynactin complex 50 kda subunit (50 kda dynein-associated polypeptide) (dynamitin) (dctn-50) (dynactin 2). [source:swissprot;acc:q13561]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
59.2026\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
61.8861\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04533\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dystrobrevin binding protein 1; dysbindin. [source:refseq;acc:nm\_032122]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5678.02\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6161.65\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08518\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2 (ec 2.6.1.16) (hexosephosphate aminotransferase 2) (d-fructose-6- phosphate amidotransferase 2) (gfat 2) (gfat2). [source:swissprot;acc:o94808]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
22782.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
25865.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13531\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
interleukin-4 induced protein 1 precursor (fig-1 protein). [source:swissprot;acc:q96rq9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.55\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
214.288\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02456\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1231\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
adp,atp carrier protein, liver isoform t2 (adp/atp translocase 3) (adenine nucleotide translocator 3) (ant 3). [source:swissprot;acc:p12236]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
59.2026\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
61.8861\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04533\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
isocitrate dehydrogenase [nad] subunit alpha, mitochondrial precursor (ec 1.1.1.41) (isocitric dehydrogenase) (nad+-specific icdh). [source:swissprot;acc:p50213]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
22798.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
25881\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13519\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
probable dimethyladenosine transferase (ec 2.1.1.-) (s- adenosylmethionine-6-n',n'-adenosyl(rrna) dimethyltransferase) (18s rrna dimethylase). [source:swissprot;acc:q9unq2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5132.68\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5569.54\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08511\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
putative phosphoglycerate mutase 3 (ec 5.4.2.1) (ec 5.4.2.4) (ec 3.1.3.13). [source:swissprot;acc:q8n0y7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212.724\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
207.637\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0245\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1232\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
adp,atp carrier protein, heart/skeletal muscle isoform t1 (adp/atp translocase 1) (adenine nucleotide translocator 1) (ant 1). [source:swissprot;acc:p12235]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
59.2026\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
61.8861\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04533\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
isocitrate dehydrogenase [nad] subunit beta, mitochondrial precursor (ec 1.1.1.41) (isocitric dehydrogenase) (nad+-specific icdh). [source:swissprot;acc:o43837]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
22798.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
25881\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13519\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear factor, interleukin 3 regulated. [source:refseq;acc:nm\_005384]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5869.24\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6367.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08494\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
pyrroline-5-carboxylate reductase (ec 1.5.1.2) (p5cr) (p5c reductase). [source:swissprot;acc:p32322]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
172.543\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
168.417\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0245\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1233\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
adp,atp carrier protein, fibroblast isoform (adp/atp translocase 2) (adenine nucleotide translocator 2) (ant 2). [source:swissprot;acc:p05141]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
59.2026\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
61.8861\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04533\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
isocitrate dehydrogenase [nad] subunit gamma, mitochondrial precursor (ec 1.1.1.41) (isocitric dehydrogenase) (nad+-specific icdh). [source:swissprot;acc:p51553]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
22798.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
25881\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13519\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
phosphoglycerate mutase 1 (ec 5.4.2.1) (ec 5.4.2.4) (ec 3.1.3.13) (phosphoglycerate mutase isozyme b) (pgam-b) (bpg-dependent pgam 1). [source:swissprot;acc:p18669]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212.724\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
207.637\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0245\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tyrosinase precursor (ec 1.14.18.1) (monophenol monooxygenase) (tumor rejection antigen ab) (sk29-ab) (lb24-ab). [source:swissprot;acc:p14679]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6004.54\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6514.24\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08489\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1234\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
bloom's syndrome protein (ec 3.6.1.-) (recq protein-like 3) (dna helicase, recq-like, type 2). [source:swissprot;acc:p54132]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.5512\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
65.3862\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04532\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cerebral cell adhesion molecule. [source:refseq;acc:nm\_016174]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62198.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
70599.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13507\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
phosphoglycerate mutase 2 (ec 5.4.2.1) (ec 5.4.2.4) (ec 3.1.3.13) (phosphoglycerate mutase isozyme m) (pgam-m) (bpg-dependent pgam 2) (muscle-specific phosphoglycerate mutase). [source:swissprot;acc:p15259]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212.724\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
207.637\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0245\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
similar to ecotropic viral integration site 5; neuroblastoma stage 4s gene. [source:refseq;acc:nm\_145245]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5807.83\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
6300.47\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.08482\vspace{3pt}}}\\\cline{1-2}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1235\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ecotropic viral integration site 5; neuroblastoma stage 4s gene. [source:refseq;acc:nm\_005665]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1 (ec 2.6.1.16) (hexosephosphate aminotransferase 1) (d-fructose-6- phosphate amidotransferase 1) (gfat 1) (gfat1). [source:swissprot;acc:q06210]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
22816.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
25898.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13505\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
keratin associated protein 9-4; keratin associated protein 9.4. [source:refseq;acc:nm\_033191]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.356\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
224.723\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02447\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein c20orf4 (protein cgi-23) (pro0225). [source:swissprot;acc:q9y312]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
61.5382\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64.3268\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04531\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1236\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
keratin associated protein 4-10; keratin associated protein 4.10. [source:refseq;acc:nm\_033060]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.354\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
224.699\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02437\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
kinesin family member c3. [source:refseq;acc:nm\_005550]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26958\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
30597.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13499\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
p10-binding protein. [source:refseq;acc:nm\_024491]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5594.18\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6067.49\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08461\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
trehalase precursor (ec 3.2.1.28) (alpha,alpha-trehalase) (alpha,alpha-trehalose glucohydrolase). [source:swissprot;acc:o43280]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
64.9834\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.9275\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04531\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1237\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
keratin associated protein 4-2; keratin associated protein 4.2. [source:refseq;acc:nm\_033062]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.354\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
224.699\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02437\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
myelin gene expression factor 2. [source:refseq;acc:nm\_016132]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26039.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
29551.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13486\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tsc22-related inducible leucine zipper protein 2 (tsc-22-like protein thg-1). [source:swissprot;acc:q9y3q8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5873.56\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6370.31\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08457\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
[pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial precursor (ec 2.7.1.99) (pyruvate dehydrogenase kinase isoform 1). [source:swissprot;acc:q15118]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.6895\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
65.5272\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04527\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1238\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60 kda heat shock protein, mitochondrial precursor (hsp60) (60 kda chaperonin) (cpn60) (heat shock protein 60) (hsp-60) (mitochondrial matrix protein p1) (p60 lymphocyte protein) (hucha60). [source:swissprot;acc:p10809]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
23538.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26712.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13485\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
keratin associated protein 4.3 (fragment). [source:sptrembl;acc:q9byr4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.354\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
224.699\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02437\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sphingolipid delta 4 desaturase; membrane fatty acid (lipid) desaturase; dihydroceramide desaturase. [source:refseq;acc:nm\_003676]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5873.56\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6370.31\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08457\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
[pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial precursor (ec 2.7.1.99) (pyruvate dehydrogenase kinase isoform 2). [source:swissprot;acc:q15119]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.6896\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
65.5272\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04526\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1239\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
daz associated protein 1 isoform b; deleted in azoospermia associated protein 1. [source:refseq;acc:nm\_018959]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5654.53\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6132.76\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08457\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
fuse-binding protein-interacting repressor isoform b; siah binding protein 1; pyrimidine tract binding splicing factor; ro ribonucleoprotein-binding protein 1; poly-u binding splicing factor puf60. [source:refseq;acc:nm\_014281]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26127.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
29648.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13474\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
keratin associated protein 2-4; keratin associated protein 2.4. [source:refseq;acc:nm\_033184]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.354\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
224.699\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02437\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
rho guanine nucleotide exchange factor 7 (pak-interacting exchange factor beta) (beta-pix) (cool-1) (p85). [source:swissprot;acc:q14155]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.3671\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
57.7552\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04522\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1240\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome c oxidase assembly protein cox11, mitochondrial precursor. [source:swissprot;acc:q9y6n1]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
62.6939\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
65.5285\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04521\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
keratin associated protein 4-14; keratin associated protein 4.14. [source:refseq;acc:nm\_033059]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.354\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
224.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02437\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
multisynthetase complex auxiliary component p38 (jtv-1 protein) (pro0992). [source:swissprot;acc:q13155]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26127.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
29648.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.13474\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
retinoic acid induced 17; pias-like protein hzimp10. [source:refseq;acc:nm\_020338]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
5654.54\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6132.69\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08456\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{3}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1241\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
26s proteasome non-atpase regulatory subunit 2 (26s proteasome regulatory subunit s2) (26s proteasome subunit p97) (tumor necrosis factor type 1 receptor associated protein 2) (55.11 protein). [source:swissprot;acc:q13200]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6436.19\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6980.13\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08451\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
keratin associated protein 4.9 (fragment). [source:sptrembl;acc:q9byq8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
219.354\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
224.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.02437\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
surfeit locus protein 1. [source:swissprot;acc:q15526]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.6939\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
65.5285\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04521\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/