Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 397 to 446 of 3228 in total 
Value Type: Ranked
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.16666666666667\textwidth}
\def\wcB{0.16666666666667\textwidth}
\def\wcC{0.16666666666667\textwidth}
\def\wcD{0.16666666666667\textwidth}
\def\wcE{0.16666666666667\textwidth}
\begin{longtable}{|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
397\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
t-complex protein 1, gamma subunit (tcp-1-gamma) (cct-gamma). [source:swissprot;acc:p49368]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
110.689\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
101.613\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08932\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
398\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
muscle-specific beta 1 integrin binding protein. [source:refseq;acc:nm\_014446]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
218.818\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
238.358\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0893\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
399\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
clathrin heavy chain 1 (clh-17). [source:swissprot;acc:q00610]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
207.889\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
226.226\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08821\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
400\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
phosducin-like protein (phlp). [source:swissprot;acc:q13371]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
207.908\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
226.218\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08807\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
401\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
replication protein a 70 kda dna-binding subunit (rp-a) (rf-a) (replication factor-a protein 1) (single-stranded dna-binding protein). [source:swissprot;acc:p27694]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
402\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
replication protein a 32 kda subunit (rp-a) (rf-a) (replication factor-a protein 2). [source:swissprot;acc:p15927]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
403\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
phosducin (phd) (33 kda phototransducing protein) (meka protein). [source:swissprot;acc:p20941]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
404\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna repair protein rad52 homolog. [source:swissprot;acc:p43351]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
405\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
clathrin heavy chain 2 (clh-22). [source:swissprot;acc:p53675]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
207.931\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
226.209\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0879\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
406\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor dp-1 (e2f dimerization partner 1) (drtf1- polypeptide-1) (drtf1). [source:swissprot;acc:q14186]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
265.634\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
244.304\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08731\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
407\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
28s ribosomal protein s9, mitochondrial precursor (mrp-s9). [source:swissprot;acc:p82933]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
239.75\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
260.544\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08673\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
408\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ccaat-box-binding transcription factor (ccaat-binding factor) (cbf). [source:swissprot;acc:q03701]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
255.112\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
234.804\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08649\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
409\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
rna polymerase i associated factor 53. [source:refseq;acc:nm\_022490]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
241.045\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
261.874\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08641\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
410\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
tfiih basal transcription factor complex p44 subunit (basic transcription factor 2 44 kda subunit) (btf2-p44) (general transcription factor iih polypeptide 2). [source:swissprot;acc:q13888]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
233.376\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
253.539\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.0864\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
411\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
tfiih basal transcription factor complex p62 subunit (basic transcription factor 62 kda subunit) (btf2-p62) (general transcription factor iih polypeptide 1). [source:swissprot;acc:p32780]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
412\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (ec 1.10.2.2) (rieske iron-sulfur protein) (risp). [source:swissprot;acc:p47985]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
240.788\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
261.416\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08567\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
413\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase i 40 kda polypeptide (ec 2.7.7.6) (rpa40) (rpa39). [source:swissprot;acc:o15160]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
240.913\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
261.45\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08525\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
414\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
katanin p60 subunit a 1. [source:refseq;acc:nm\_007044]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
232.431\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
252.238\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08522\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
415\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
katanin p80 subunit b 1; katanin (80 kda); katanin p80 (wd40-containing) subunit b 1. [source:refseq;acc:nm\_005886]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
232.382\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
252.166\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08514\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
416\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase i 135 kda polypeptide (ec 2.7.7.6) (rna polymerase i subunit 2) (rpa135). [source:swissprot;acc:q9h9y6]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
240.6\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
261.041\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08496\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
417\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
set domain and mariner transposase fusion gene. [source:refseq;acc:nm\_006515]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
233.539\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
253.197\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08417\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
418\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cd209 antigen-like; putative type ii membrane protein. [source:refseq;acc:nm\_014257]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
419\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
low affinity immunoglobulin epsilon fc receptor (lymphocyte ige receptor) (fc-epsilon-rii) (cd23) (blast-2) (immunoglobulin e-binding factor). [source:swissprot;acc:p06734]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
420\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cd209 antigen; dendritic cell-specific icam3-grabbing nonintegrin. [source:refseq;acc:nm\_021155]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
421\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
tuftelin-interacting protein 11 (hspc006). [source:swissprot;acc:q9ubb9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
223.202\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
205.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08403\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
422\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ras-related protein rab-37. [source:swissprot;acc:q96ax2]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
240.287\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
260.193\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08284\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
423\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ras-related protein rab-26. [source:swissprot;acc:q9ulw5]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
424\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 33 kda polypeptide (ec 2.7.7.6) (rpb3) (rna polymerase ii subunit 3) (rpb33) (rpb31). [source:swissprot;acc:p19387]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
425\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
max protein. [source:swissprot;acc:p25912]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
227.828\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
210.561\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.082\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
426\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dynactin 4. [source:refseq;acc:nm\_032486]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
233.142\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
252.253\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08197\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
427\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 23 kda polypeptide (ec 2.7.7.6) (rpb25) (xap4) (rpb5) (rpabc1). [source:swissprot;acc:p19388]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
239.977\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
259.525\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08146\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
428\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
atp-dependent rna helicase mgc2835; atp-dependent rna helicase; apoptosis related protein apr-5; dead box helicase 97 kda. [source:refseq;acc:nm\_024072]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
253.852\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
234.808\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0811\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
429\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
polymerase (rna) iii (dna directed) (32kd). [source:refseq;acc:nm\_006467]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
239.709\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
259.038\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08064\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
430\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
u6 snrna-associated sm-like protein lsm5. [source:swissprot;acc:q9y4y9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
227.748\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
210.888\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07995\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
431\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
trub pseudouridine (psi) synthase homolog 1. [source:refseq;acc:nm\_139169]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
236.245\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
255.113\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07987\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
432\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
endonuclease g, mitochondrial precursor (ec 3.1.30.-) (endo g). [source:swissprot;acc:q14249]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
212.547\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
229.411\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.07934\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
433\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
programmed cell death protein 8, mitochondrial precursor (ec 1.-.-.-) (apoptosis-inducing factor). [source:swissprot;acc:o95831]\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
434\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
t-box transcription factor tbx6 (t-box protein 6). [source:swissprot;acc:o95947]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
435\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
polymerase (dna directed) iota; rad30 (s. cerevisiae) homolog b; polymerase (dna-directed), iota. [source:refseq;acc:nm\_007195]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
221.522\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
205.286\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.07909\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
436\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
paxillin. [source:swissprot;acc:p49023]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
437\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
cdc42-interacting protein 4 (thyroid receptor interacting protein 10) (trip-10). [source:swissprot;acc:q15642]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
209.921\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
226.459\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07878\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
438\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
n-terminal acetyltransferase complex ard1 subunit homolog (ec 2.3.1.-). [source:swissprot;acc:p41227]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
233.723\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.674\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07869\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
439\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s9. [source:swissprot;acc:p46781]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
238.986\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
257.784\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07866\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
440\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
highly expressed in cancer, rich in leucine heptad repeats. [source:refseq;acc:nm\_006101]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
231.802\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
249.983\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07843\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
441\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
grb2-related adaptor protein. [source:swissprot;acc:q13588]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
223.457\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.222\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07835\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
442\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
e2a-pbx1-associated protein; putative 47 kda protein. [source:refseq;acc:nm\_020140]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
223.802\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.55\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.0783\vspace{3pt}}}\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
443\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
neuron navigator 2 isoform l; retinoic acid inducible in neuroblastoma; pore membrane and/or filament interacting like protein 2; helicase helad1. [source:refseq;acc:nm\_145117]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
223.79\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.539\vspace{3pt}}&\\\cline{1-4}
\parbox{\wcA}{\vspace{3pt}\noindent
444\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
neuron navigator 1; neuron navigator-1; pore membrane and/or filament interacting like protein 3. [source:refseq;acc:nm\_020443]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
223.801\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
207.549\vspace{3pt}}}&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
445\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
neuron navigator 3; pore membrane and/or filament interacting like protein 1; steerin 3. [source:refseq;acc:nm\_014903]\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
446\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
growth factor receptor-bound protein 2 (grb2 adapter protein) (sh2/sh3 adapter grb2) (ash protein). [source:swissprot;acc:p29354]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
224.049\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
207.785\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07827\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/