Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 3562 to 3611 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{3}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
891\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
polyamine oxidase isoform 1; polyamine oxidase; flavin-containing spermine oxidase; putative cyclin g1 interacting protein; flavin containing amine oxidase. [source:refseq;acc:nm\_019025]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
56.7818\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
60.2369\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06085\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
rw1 protein (fragment). [source:swissprot;acc:q92545]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
18178.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
21081.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15974\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
small gtp-binding tumor suppressor 1. [source:refseq;acc:nm\_145173]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212.028\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
204.055\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03907\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
892\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome c-type heme lyase (ec 4.4.1.17) (cchl) (holocytochrome c- type synthase). [source:swissprot;acc:p53701]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
56.7817\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
60.2369\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06085\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cytoplasmic protein nck1 (nck adaptor protein 1) (sh2/sh3 adaptor protein nck-alpha). [source:swissprot;acc:p16333]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6784.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7475.48\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10182\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
di-ras2. [source:refseq;acc:nm\_017594]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
212.028\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
204.055\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03907\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tsc22-related inducible leucine zipper protein 2 (tsc-22-like protein thg-1). [source:swissprot;acc:q9y3q8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26312\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
30514.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1597\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
893\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
e-1 enzyme. [source:refseq;acc:nm\_021204]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6603.09\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7274.72\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10171\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glutathione s-transferase theta 1 (ec 2.5.1.18) (gst class-theta) (glutathione transferase t1-1). [source:swissprot;acc:p30711]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
56.781\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
60.2344\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06082\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
myc proto-oncogene protein (c-myc). [source:swissprot;acc:p01106]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.585\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
219.037\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03903\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sphingolipid delta 4 desaturase; membrane fatty acid (lipid) desaturase; dihydroceramide desaturase. [source:refseq;acc:nm\_003676]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
26312\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
30514.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1597\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
894\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
parafibromin. [source:refseq;acc:nm\_024529]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4331.17\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4771.22\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1016\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
phenylalanyl-trna synthetase alpha chain (ec 6.1.1.20) (phenylalanine- -trna ligase alpha chain) (phers) (cml33). [source:swissprot;acc:q9y285]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.491\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
209.323\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03902\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
segment polarity protein dishevelled homolog dvl-3 (dishevelled-3) (dsh homolog 3). [source:swissprot;acc:q92997]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
20322.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23567.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15966\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription initiation factor iib (general transcription factor tfiib) (s300-ii). [source:swissprot;acc:q00403]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
56.2142\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
59.6282\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.06073\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
895\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
exocyst complex component sec8. [source:swissprot;acc:q96a65]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
63.2983\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.1422\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
heterogeneous nuclear ribonucleoprotein l (hnrnp l). [source:swissprot;acc:p14866]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10247.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11289\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1016\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
leucyl-trna synthetase. [source:refseq;acc:nm\_020117]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
21830.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
25308.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15931\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
phenylalanine-trna synthetase. [source:refseq;acc:nm\_006567]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.491\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
209.323\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03902\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
896\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna-directed rna polymerase ii 13.3 kda polypeptide (ec 2.7.7.6) (rpb11). [source:swissprot;acc:p52435]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
230.811\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
239.785\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03888\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
probable leucyl-trna synthetase, mitochondrial precursor (ec 6.1.1.4) (leucine--trna ligase) (leurs). [source:swissprot;acc:q15031]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
21830.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
25308.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15931\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
signal recognition particle receptor alpha subunit (sr-alpha) (docking protein alpha) (dp-alpha). [source:swissprot;acc:p08240]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5208.27\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5737.17\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10155\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
thyroid receptor interacting protein 3 (trip-3) (fragment). [source:swissprot;acc:q15649]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
56.2142\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
59.6282\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06073\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
897\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
3-phosphoinositide dependent protein kinase-1 (ec 2.7.1.37) (hpdk1). [source:swissprot;acc:o15530]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
272.878\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
283.472\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03882\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glucose-6-phosphate isomerase (ec 5.3.1.9) (gpi) (phosphoglucose isomerase) (pgi) (phosphohexose isomerase) (phi) (neuroleukin) (nlk) (sperm antigen-36) (sa-36). [source:swissprot;acc:p06744]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
29924.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
34690.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15929\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
histone deacetylase 2 (hd2). [source:swissprot;acc:q92769]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5929.48\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6531.48\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10153\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nhp2-like protein 1 (high mobility group-like nuclear protein 2 homolog 1) ([u4/u6.u5] tri-snrnp 15.5 kda protein) (otk27). [source:swissprot;acc:p55769]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
56.2142\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
59.6282\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06073\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
898\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s acidic ribosomal protein p1. [source:swissprot;acc:p05386]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
229.171\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
238.048\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03874\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
multiple coagulation factor deficiency 2; neural stem cell derived neuronal survival protein; multiple coagulation factor deficiency protein 2. [source:refseq;acc:nm\_139279]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5929.55\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6531.52\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10152\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear fragile x mental retardation protein interacting protein 1; nuclear fragile x mental retardation intercating protein 1; nuclear fragile x mental retardation protein-interacting protein 1. [source:refseq;acc:nm\_012345]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
56.2142\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
59.6282\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06073\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
pleiotropic regulator 1 (prl1homolog, arabidopsis); pleiotropic regulator 1 (prl1, arabidopsis homolog). [source:refseq;acc:nm\_002669]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
21156.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
24524.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1592\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
899\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
6-phosphogluconolactonase (ec 3.1.1.31) (6pgl). [source:swissprot;acc:o95336]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
29345.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
34004.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.15875\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
c439a6.1 (novel protein similar to heparan sulfate (glucosamine) 3-o- sulfotransferases) (fragment). [source:sptrembl;acc:q96qi5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
66.5785\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
70.6139\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06061\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dj153g14.2 (possible ca binding protein similar to nefa) (fragment). [source:sptrembl;acc:q9ujn8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5929.55\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6531.52\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10152\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
thioredoxin domain-containing 2; sperm-specific thioredoxin; thioredoxin domain-containing 2 (spermatozoa). [source:refseq;acc:nm\_032243]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
229.171\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
238.048\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03874\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
900\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cg9578-like; yeast ypr037w and worm c02c2.6 predicted proteins-like. [source:refseq;acc:nm\_152902]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4713.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4279.17\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10152\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
heparan sulfate d-glucosaminyl 3-o-sulfotransferase 3a1; heparin-glucosamine 3-o-sulfotransferase. [source:refseq;acc:nm\_006042]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
66.5785\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
70.6139\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06061\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
thioredoxin (atl-derived factor) (adf) (surface associated sulphydryl protein) (sasp). [source:swissprot;acc:p10599]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
229.171\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
238.048\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03874\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
topoisomerase (dna) ii binding protein. [source:refseq;acc:nm\_007027]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
28068.5\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
32522.9\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.1587\vspace{3pt}}}\\\cline{1-2}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
901\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
acyl-coenzyme a oxidase 1, peroxisomal (ec 1.3.3.6) (palmitoyl-coa oxidase) (aox). [source:swissprot;acc:q15067]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
heparan sulfate d-glucosaminyl 3-o-sulfotransferase 3b1. [source:refseq;acc:nm\_006041]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
66.5785\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
70.6139\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06061\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
histone deacetylase 1 (hd1). [source:swissprot;acc:q13547]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5929.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6531.55\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10151\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
structure-specific recognition protein 1 (ssrp1) (recombination signal sequence recognition protein) (t160) (chromatin-specific transcription elongation factor 80 kda subunit) (fact 80 kda subunit). [source:swissprot;acc:q08945]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
237.62\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
228.762\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03872\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
902\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
atp synthase f chain, mitochondrial (ec 3.6.3.14). [source:swissprot;acc:p56134]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
28068.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32522.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1587\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
chromatin-specific transcription elongation factor large subunit. [source:refseq;acc:nm\_007192]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
237.62\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
228.762\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03872\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
estrogen-related receptor gamma (estrogen receptor related protein 3) (err gamma-2). [source:swissprot;acc:o75454]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10246.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11285.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10147\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
heparan sulfate d-glucosaminyl  3-o-sulfotransferase 2; heparin-glucosamine 3-o-sulfotransferase. [source:refseq;acc:nm\_006043]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
66.5785\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
70.6139\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06061\vspace{3pt}}\\\hline
\multirow{3}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
903\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 3 subunit 4 (eif-3 delta) (eif3 p44) (eif-3 rna-binding subunit) (eif3 p42) (eif3g). [source:swissprot;acc:o75821]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
246.354\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
237.223\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03849\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mrna decapping enzyme; histidine triad protein member 5; heat shock-like protein 1. [source:refseq;acc:nm\_014026]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
66.5785\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
70.6139\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06061\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
probable atp-dependent helicase ddx35 (deah-box protein 35). [source:swissprot;acc:q9h5z1]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
28068.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32522.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1587\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/