Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 3408 to 3457 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
852\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
ras-gtpase-activating protein binding protein 1 (gap sh3-domain binding protein 1) (g3bp-1). [source:swissprot;acc:q13283]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
31100.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36086.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16033\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
853\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
apoptosis antagonizing transcription factor. [source:refseq;acc:nm\_012138]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4078.45\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4502.32\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10393\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ras-gtpase-activating protein binding protein 2 (gap sh3-domain binding protein 2) (g3bp-2). [source:swissprot;acc:q9un86]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
31100.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36086.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16033\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
target of egr1, member 1 (nuclear); target of egr1, member 1. [source:refseq;acc:nm\_025077]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
64.0287\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
68.0566\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06291\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
wd-repeat protein wdc146. [source:swissprot;acc:q9c0j8]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
108.289\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
112.772\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.0414\vspace{3pt}}}\\\cline{1-2}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
854\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cleavage and polyadenylation specificity factor, 160 kda subunit (cpsf 160 kda subunit). [source:swissprot;acc:q10570]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
importin alpha-3 subunit (karyopherin alpha-3 subunit) (srp1-gamma). [source:swissprot;acc:o00505]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
64.0316\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
68.0597\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06291\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
keratin associated protein 1-3; keratin associated protein 1.3. [source:refseq;acc:nm\_030966]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
31100.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36086.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16033\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
uba/ubx 33.3 kda protein. [source:swissprot;acc:q04323]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6562.98\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
7242.37\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.10352\vspace{3pt}}}\\\cline{1-2}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
855\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ero1-like. [source:refseq;acc:nm\_014584]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
espin. [source:refseq;acc:nm\_031475]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
31100.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36086.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16033\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
importin alpha-4 subunit (karyopherin alpha-4 subunit) (qip1 protein). [source:swissprot;acc:o00629]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
64.0262\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
68.0537\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0629\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tetranectin precursor (tn) (plasminogen-kringle 4 binding protein). [source:swissprot;acc:p05452]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
178.514\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
171.42\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04138\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
856\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome p450 2d6 (ec 1.14.14.1) (cypiid6) (p450-db1) (debrisoquine 4-hydroxylase). [source:swissprot;acc:p10635]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
31100.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36086.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16033\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
heparin sulfate n-deacetylase/n-sulfotransferase (ec 2.8.2.-) (n- hsst) (n-heparin sulfate sulfotransferase) (glucosaminyl n- deacetylase/n-sulfotransferase). [source:swissprot;acc:p52849]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5210.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5749.33\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1034\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mannose-p-dolichol utilization defect 1 protein (suppressor of lec15 and lec35 glycosylation mutation homolog) (sl15). [source:swissprot;acc:o75352]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
58.5944\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
62.2766\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06284\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
xenotropic and polytropic retrovirus receptor. [source:refseq;acc:nm\_004736]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
215.028\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
206.623\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04068\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
857\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial translational release factor 1-like. [source:refseq;acc:nm\_019041]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
58.6002\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
62.2793\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06278\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
n-deacetylase/n-sulfotransferase (heparan glucosaminyl) 3. [source:refseq;acc:nm\_004784]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5210.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5749.33\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1034\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
pleckstrin homology domain containing, family c (with ferm domain) member 1; mitogen inducible 2; kindlin 2. [source:refseq;acc:nm\_006832]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
31100.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36086.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16033\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
putatative 28 kda protein. [source:refseq;acc:nm\_020143]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
227.241\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
236.467\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0406\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
858\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
calcium-transporting atpase type 2c, member 1 (ec 3.6.3.8) (atpase 2c1) (atp-dependent ca(2+) pump pmr1) (hussy-28). [source:swissprot;acc:p98194]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
65.1843\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
69.2736\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06273\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
lim and senescent cell antigen-like domains 2; ilk-binding protein. [source:refseq;acc:nm\_017980]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
31100.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36086.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16033\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
n-deacetylase/n-sulfotransferase 4. [source:refseq;acc:nm\_022569]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5210.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5749.33\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1034\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
syntaxin 12. [source:refseq;acc:nm\_177424]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.446\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
208.997\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04043\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
859\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l39. [source:swissprot;acc:p02404]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
234.025\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
224.958\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04031\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
d(4) dopamine receptor (d(2c) dopamine receptor). [source:swissprot;acc:p21917]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
31100.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36086.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16033\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
heparan sulfate n-deacetylase/n-sulfotransferase (ec 2.8.2.8) (n-hsst) (hsnst) ([heparan sulfate]-glucosamine n-sulfotransferase) (n-heparan sulfate sulfotransferase) (glucosaminyl n-deacetylase/n- sulfotransferase). [source:swissprot;acc:p52848]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5210.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5749.33\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1034\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
trub pseudouridine (psi) synthase homolog 1. [source:refseq;acc:nm\_139169]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
53.3429\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
50.2017\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06257\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
860\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l18a. [source:swissprot;acc:q02543]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
234.025\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
224.958\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04031\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
neurotrypsin precursor (ec 3.4.21.-) (motopsin) (leydin). [source:swissprot;acc:p56730]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24242.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
28127.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16025\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein cdc27hs (cell division cycle protein 27 homolog) (h-nuc). [source:swissprot;acc:p30260]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5210.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5749.33\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1034\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
werner helicase interacting protein isoform 1; putative helicase ruvbl; werner helicase interacting protein. [source:refseq;acc:nm\_020135]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.6929\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64.4864\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0625\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
861\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s19. [source:swissprot;acc:p39019]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
234.025\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
224.958\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04031\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
apoptosis antagonizing transcription factor. [source:refseq;acc:nm\_012138]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
51.8245\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
55.0559\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06235\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
bloom's syndrome protein (ec 3.6.1.-) (recq protein-like 3) (dna helicase, recq-like, type 2). [source:swissprot;acc:p54132]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5734.15\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6326.41\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10329\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ring finger protein 44. [source:refseq;acc:nm\_014901]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24242.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
28127.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16025\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
862\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l31. [source:swissprot;acc:p12947]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
234.025\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
224.958\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04031\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
adrenodoxin, mitochondrial precursor (adrenal ferredoxin) (hepatoredoxin) (ferredoxin 1). [source:swissprot;acc:p10109]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
76.0455\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
80.7777\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06223\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
phosphatidylinositol 3-kinase regulatory alpha subunit (pi3-kinase p85-alpha subunit) (ptdins-3-kinase p85-alpha) (pi3k). [source:swissprot;acc:p27986]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24242.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
28127.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16025\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
probable ribosome biogenesis protein nep1 (c2f protein). [source:swissprot;acc:q92979]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4076.72\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4497.74\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10327\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
863\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
casein kinase ii, alpha chain (ck ii) (ec 2.7.1.37). [source:swissprot;acc:p19138]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
240.194\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
230.957\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03999\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
hcv ns3-transactivated protein 1. [source:refseq;acc:nm\_019048]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
62.7551\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
66.6474\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06202\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
neurotrypsin precursor (ec 3.4.21.-) (motopsin) (leydin). [source:swissprot;acc:p56730]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5595.65\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6173.23\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10322\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ring finger protein 38. [source:refseq;acc:nm\_022781]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24242.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
28127.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16025\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
864\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
casein kinase ii, alpha' chain (ck ii) (ec 2.7.1.37). [source:swissprot;acc:p19784]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
240.194\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
230.957\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03999\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
phosphatidylinositol 3-kinase regulatory gamma subunit (pi3-kinase p85-gamma subunit) (ptdins-3-kinase p85-gamma) (p55pik). [source:swissprot;acc:q92569]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24242.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
28127.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16025\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ring finger protein 44. [source:refseq;acc:nm\_014901]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5595.65\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6173.23\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.10322\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vacuolar atp synthase catalytic subunit a, ubiquitous isoform (ec 3.6.3.14) (v-atpase a subunit 1) (vacuolar proton pump alpha subunit 1) (v-atpase 69 kda subunit 1) (isoform va68). [source:swissprot;acc:p38606]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
62.7551\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
66.6474\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.06202\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
865\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
asparagine synthetase [glutamine-hydrolyzing] (ec 6.3.5.4) (glutamine- dependent asparagine synthetase) (ts11 cell cycle control protein). [source:swissprot;acc:p08243]\vspace{3pt}}&&&&\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/