Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Value Type description Interaction Map Network Comparison Type Rank red Gene Filtered green network_comparison
Results: HTML CSV LaTeX Showing element 332 to 381 of 3228 in total 
Value Type: Measured
Interaction Map: High confidence
Network Comparison Type: Divided
Filtered: 1

\def\wcA{0.16666666666667\textwidth}
\def\wcB{0.16666666666667\textwidth}
\def\wcC{0.16666666666667\textwidth}
\def\wcD{0.16666666666667\textwidth}
\def\wcE{0.16666666666667\textwidth}
\begin{longtable}{|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
ataxin-1 ubiquitin-like interacting protein. [source:refseq;acc:nm\_020131]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2645\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
9128.19\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9218.44\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00989\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atlastin; guanylate-binding protein 3. [source:refseq;acc:nm\_015915]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
206\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5720.25\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4577.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.24965\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp synthase alpha chain, mitochondrial precursor (ec 3.6.3.14). [source:swissprot;acc:p25705]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
834\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5623.18\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6218.77\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10592\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp synthase b chain, mitochondrial precursor (ec 3.6.3.14). [source:swissprot;acc:p24539]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1970\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4374.32\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4126.96\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05994\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp synthase beta chain, mitochondrial precursor (ec 3.6.3.14). [source:swissprot;acc:p06576]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
869\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5595.65\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6173.23\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10322\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp synthase coupling factor 6, mitochondrial precursor (ec 3.6.3.14) (f6). [source:swissprot;acc:p18859]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2893\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp synthase coupling factor b, mitochondrial precursor. [source:swissprot;acc:q99766]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1507\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6152.78\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6610.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07439\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp synthase delta chain, mitochondrial precursor (ec 3.6.3.14). [source:swissprot;acc:p30049]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
811\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6000.07\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6655.11\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10917\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp synthase f chain, mitochondrial (ec 3.6.3.14). [source:swissprot;acc:p56134]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2036\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6920.71\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7315.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05706\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp synthase g chain, mitochondrial (ec 3.6.3.14) (atpase subunit g). [source:swissprot;acc:o75964]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2834\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp synthase gamma chain, mitochondrial precursor (ec 3.6.3.14). [source:swissprot;acc:p36542]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
824\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5657.53\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6263.02\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10702\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp synthase mitochondrial f1 complex assembly factor 2. [source:refseq;acc:nm\_145691]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1657\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5488.7\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5131.89\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.06953\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp synthase oligomycin sensitivity conferral protein, mitochondrial precursor (ec 3.6.3.14) (oscp). [source:swissprot;acc:p48047]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
825\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5657.53\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6263.02\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10702\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp-binding cassette, sub-family c, member 10; multidrug resistance-associated protein 7. [source:refseq;acc:nm\_033450]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2676\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7780.98\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7741.14\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00515\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp-binding cassette, sub-family d, member 3 (70 kda peroxisomal membrane protein) (pmp70). [source:swissprot;acc:p28288]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1380\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6079.46\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6555.41\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07829\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp-citrate synthase (ec 2.3.3.8) (atp-citrate (pro-s-)-lyase) (citrate cleavage enzyme). [source:swissprot;acc:p53396]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2005\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6064.92\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6421.65\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05882\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp-dependent clp protease atp-binding subunit clpx-like, mitochondrial precursor. [source:swissprot;acc:o76031]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1574\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5106.13\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5472.96\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07184\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp-dependent dna helicase ii, 70 kda subunit (lupus ku autoantigen protein p70) (ku70) (70 kda subunit of ku antigen) (thyroid-lupus autoantigen) (tlaa) (ctc box binding factor 75 kda subunit) (ctcbf) (ctc75). [source:swissprot;acc:p12956]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1838\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5739.49\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6108.72\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.06433\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
atp-dependent dna helicase ii, 80 kda subunit (lupus ku autoantigen protein p86) (ku86) (ku80) (86 kda subunit of ku antigen) (thyroid- lupus autoantigen) (tlaa) (ctc box binding factor 85 kda subunit) (ctcbf) (ctc85) (nuclear factor iv) (dna-repair protein xrcc5). [source:swissprot;acc:p13010]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1839\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp-dependent dna helicase q5 (recq protein-like 5) (recq5). [source:swissprot;acc:o94762]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1552\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6025.86\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6464.16\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07274\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp-dependent rna helicase ddx18 (dead-box protein 18) (myc-regulated dead-box protein) (mrdb). [source:swissprot;acc:q9nvp1]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
463\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3720.18\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4264.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.1463\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp-dependent rna helicase ddx24 (dead-box protein 24). [source:swissprot;acc:q9gzr7]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
326\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3432.96\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4081.21\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.18883\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp-dependent rna helicase mgc2835; atp-dependent rna helicase; apoptosis related protein apr-5; dead box helicase 97 kda. [source:refseq;acc:nm\_024072]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
392\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3641.89\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4236.95\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.16339\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atp-dependent rna helicase rok1; atp-dependent rna helicase. [source:refseq;acc:nm\_007010]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
836\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4049\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4477.43\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10581\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atpase inhibitor, mitochondrial precursor. [source:swissprot;acc:q9uii2]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
642\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4810.85\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5414.23\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.12542\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atpase, h+ transporting, lysosomal 38kda, v0 subunit d isoform 2. [source:refseq;acc:nm\_152565]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
760\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5870.2\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6533.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.11298\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atpase, h+ transporting, lysosomal v0 subunit a isoform 4; vacuolar proton pump 116 kda accessory subunit; vacuolar proton pump, subunit 2; h(+)-transporting two-sector atpase, noncatalytic accessory protein 1b; atpase, h+ transporting, lysosomal (vacuolar proton pump) non-catalytic accessory protein 1b; renal tubular acidosis; atpase, h+ transporting, lysosomal (vacuolar proton pump) non-catalytic accessory protein 2 (38kd). [source:refseq;acc:nm\_020632]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
789\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5890.59\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6547.99\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.1116\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atrophin-1 (dentatorubral-pallidoluysian atrophy protein). [source:swissprot;acc:p54259]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2283\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5783.7\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6048.88\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04585\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
atrophin-1 interacting protein 1; activin receptor interacting protein 1; likely ortholog of mouse activin receptor interacting protein 1; atrophin-1 interacting protein a; membrane associated guanylate kinase 2; activin receptor interacting p. [source:refseq;acc:nm\_012301]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2355\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5262.6\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5492.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0437\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
au rna-binding protein/enoyl-coenzyme a hydratase precursor; au rna-binding protein/enoyl-coenzyme a hydratase; 3-methylglutaconyl-coa hydratase; mga type i. [source:refseq;acc:nm\_001698]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2913\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
autoantigen ngp-1. [source:swissprot;acc:q13823]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
566\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3766.14\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4274.79\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.13506\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
autophagy protein 12-like (apg12-like). [source:swissprot;acc:o94817]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
203\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
11757.8\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9352.11\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.25723\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
autophagy protein 5-like (apg5-like) (apoptosis-specific protein). [source:swissprot;acc:q9h1y0]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
414\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6744.05\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5815.13\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.15974\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
axonemal dynein light intermediate polypeptide 1 (inner dynein arm light chain, axonemal) (hp28). [source:swissprot;acc:o14645]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
792\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6772.75\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7526.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.11125\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
b-cell cll/lymphoma 6, member b (zinc finger protein); zinc finger protein 62. [source:refseq;acc:nm\_181844]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1633\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
9899.79\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9251.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07011\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
b-cell lymphoma 3-encoded protein (bcl-3 protein). [source:swissprot;acc:p20749]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2658\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
8278.73\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8211.05\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00824\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
b-cell lymphoma 6 protein (bcl-6) (zinc finger protein 51) (laz-3 protein) (bcl-5). [source:swissprot;acc:p41182]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1635\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
9899.73\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
9251.16\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07011\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
b-raf proto-oncogene serine/threonine-protein kinase (ec 2.7.1.-) (p94) (v-raf murine sarcoma viral oncogene homolog b1). [source:swissprot;acc:p15056]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
198\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
17710.9\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
13977.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.26708\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
b9 protein; likely ortholog of mouse endothelial precursor protein b9. [source:refseq;acc:nm\_015681]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
609\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3886.62\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3438.82\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.13022\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
ba127l20.1 (novel glutathione-s-transferase). [source:sptrembl;acc:q9h4y5]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1973\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4374.32\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4126.96\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05994\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
ba138e2.1.2 (formin-binding protein 17 (fbp17), isoform 2). [source:sptrembl;acc:q96lh6]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1728\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5475.44\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5127.66\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.06782\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
ba203i16.1 (hypothetical protein kiaa0970). [source:sptrembl;acc:q9h1w1]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
3117\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
ba207c16.2 (fragment). [source:sptrembl;acc:q9nql7]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2636\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7017.82\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7108.89\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.01298\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
ba271b5.1 (similar to ribosomal protein s7). [source:sptrembl;acc:q9h1s9]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1641\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5782.92\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6186.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.06977\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
ba304i5.1 (novel lipase) (fragment). [source:sptrembl;acc:q96lg2]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1000\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5680.76\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6220.45\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.095\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
ba305p22.3 (breast carcinoma amplified sequence 4). [source:sptrembl;acc:q8ndy6]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
907\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
11852.9\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10773.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10019\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
ba395l14.12 (novel protein similar to small nuclear ribonucleoprotein polypeptide a' (snrpa1)). [source:sptrembl;acc:q9nu36]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
299\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4914.27\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5907.12\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.20203\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
ba508n22.1 (hspc025) (fragment). [source:sptrembl;acc:q9hcw5]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2130\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5328.73\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5616.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05402\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
ba528a10.3.2 (novel protein similar to kiaa0161, isoform 2) (fragment). [source:sptrembl;acc:q9bx39]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2968\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
bactericidal permeability-increasing protein precursor (bpi) (cap 57). [source:swissprot;acc:p17213]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2338\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5123.89\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5350.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04428\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/