Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Interaction Map Network Comparison Type Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 3151 to 3200 of 29840 in total 
Interaction Map: High confidence

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\def\wcB{0.11111111111111\textwidth}
\def\wcC{0.11111111111111\textwidth}
\def\wcD{0.11111111111111\textwidth}
\def\wcE{0.11111111111111\textwidth}
\def\wcF{0.11111111111111\textwidth}
\def\wcG{0.11111111111111\textwidth}
\def\wcH{0.11111111111111\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Filtered\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
197\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial precursor (cybs) (succinate-ubiquinone reductase membrane anchor subunit) (qps2) (cii-4) (succinate dehydrogenase complex subunit d) (succinate-ubiquinone oxidoreductase cytochrome b small subunit). [source:swissprot;acc:o14521]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71062.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
95488.9\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.34373\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein-like 1; zinc-finger protein in men1 region. [source:refseq;acc:nm\_006782]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8730\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7516\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1214\vspace{3pt}}\\\cline{1-2}\cline{5-8}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
198\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s29. [source:swissprot;acc:p30054]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
241.849\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
267.642\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
25.793\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l23a. [source:swissprot;acc:p29316]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
11844.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10636.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1208.6\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
aquaporin-cd (aqp-cd) (water channel protein for renal collecting duct) (adh water channel) (aquaporin 2) (collecting duct water channel protein) (wch-cd). [source:swissprot;acc:p41181]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
10639.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
12117.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1477.5\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
b-raf proto-oncogene serine/threonine-protein kinase (ec 2.7.1.-) (p94) (v-raf murine sarcoma viral oncogene homolog b1). [source:swissprot;acc:p15056]\vspace{3pt}}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
17710.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
13977.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.26708\vspace{3pt}}\\\cline{3-4}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
116.576\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
105.948\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10.628\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
forkhead box protein p3 (zinc finger protein jm2) (scurfin). [source:swissprot;acc:q9bzs1]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
263.191\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
231.394\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.13741\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
glutamate decarboxylase, 67 kda isoform (ec 4.1.1.15) (gad-67) (67 kda glutamic acid decarboxylase). [source:swissprot;acc:q99259]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
59.6399\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
51.9242\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.1486\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
glutamine synthetase (ec 6.3.1.2) (glutamate--ammonia ligase). [source:swissprot;acc:p15104]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
1679.15\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1177.18\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.42642\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
keratin, ultra high-sulfur matrix protein a (uhs keratin a) (uhs kera). [source:swissprot;acc:p26371]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
23.8722\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
20.9331\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.1404\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
lipocalin-interacting membrane receptor. [source:refseq;acc:nm\_018113]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
734.025\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
574.372\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
159.653\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
mto1 protein homolog (cgi-02). [source:swissprot;acc:q9y2z2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
25.4117\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
22.5968\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.8149\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein-tyrosine phosphatase beta precursor (ec 3.1.3.48) (r-ptp- beta). [source:swissprot;acc:p23467]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71062.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
95488.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.34373\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ribosomal protein l10-like protein. [source:refseq;acc:nm\_080746]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
11781.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10545.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.11723\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
secreted modular calcium-binding protein 1. [source:refseq;acc:nm\_022137]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
247.333\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
206\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.20065\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
star-related lipid transfer protein 8 (stard8) (start domain- containing protein 8). [source:swissprot;acc:q92502]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
42411.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
55802.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
13390.5\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
vacuolar atp synthase subunit g 2 (ec 3.6.3.14) (v-atpase g subunit 2) (vacuolar proton pump g subunit 2) (v-atpase 13 kda subunit 2). [source:swissprot;acc:o95670]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
451.156\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
817.981\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
366.825\vspace{3pt}}\\\cline{1-3}\cline{5-8}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
199\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s11. [source:swissprot;acc:p04643]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
241.399\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
267.088\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
25.689\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l10 (qm protein) (tumor suppressor qm) (laminin receptor homolog). [source:swissprot;acc:p27635]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
11781.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10545.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.11721\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
c367g8.3 (novel protein similar to rpl23a (60s ribosomal protein l23a)) (60s ribosomal protein l23a like). [source:sptrembl;acc:q9br02]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
11846.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
10638.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1207.9\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
glutamine synthetase (ec 6.3.1.2) (glutamate--ammonia ligase). [source:swissprot;acc:p15104]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
1230.54\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1026.18\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.19915\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
keratin associated protein 1-3; keratin associated protein 1.3. [source:refseq;acc:nm\_030966]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
23.8722\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
20.9331\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.1404\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
lens fiber major intrinsic protein (mip26) (mp26) (aquaporin 0). [source:swissprot;acc:p30301]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
10639.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
12117.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1477.5\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
luc7-like; sarcoplasmic reticulum protein luc7b1. [source:refseq;acc:nm\_018032]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
55.297\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
65.9236\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10.6266\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
microtubule-interacting protein that associates with traf3; interleukin 13 receptor alpha 1-binding protein-1. [source:refseq;acc:nm\_015650]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
21.8736\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
31.1879\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.42582\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
neuronal acetylcholine receptor protein, alpha-2 chain precursor. [source:swissprot;acc:q15822]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
42411.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
55802.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
13390.5\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
palmitoyl-protein thioesterase 2 precursor (ec 3.1.2.22) (palmitoyl- protein hydrolase 2) (ppt-2) (g14). [source:swissprot;acc:q9umr5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
242.735\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
276.059\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.13729\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, catalytic subunit, alpha isoform (ec 3.1.3.16) (pp2a-alpha) (replication protein c) (rp-c). [source:swissprot;acc:p05323]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
4916.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
3888.18\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.26455\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
source of immunodominant mhc-associated peptides; homolog of yeast stt3 gene. [source:refseq;acc:nm\_178862]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
61.2893\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
70.3856\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.14842\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
splicing factor 3b subunit 3 (spliceosome associated protein 130) (sap 130) (sf3b130) (pre-mrna splicing factor sf3b 130 kda subunit). [source:swissprot;acc:q15393]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
799.337\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
432.882\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
366.455\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
thymus-specific serine protease precursor (ec 3.4.-.-). [source:swissprot;acc:q9nqe7]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71062.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
95488.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.34373\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
tyrosinase-related gene segment, exon 5 (fragment). [source:sptrembl;acc:q15677]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
10.9527\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8.13999\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.81271\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein-like 1; zinc-finger protein in men1 region. [source:refseq;acc:nm\_006782]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
385\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
543\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
158\vspace{3pt}}\\\cline{1-3}\cline{5-8}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
200\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l17 (l23). [source:swissprot;acc:p18621]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
241.808\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
267.335\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
25.527\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
aquaporin-chip (water channel protein for red blood cells and kidney proximal tubule) (aquaporin 1) (aqp-1) (urine water channel). [source:swissprot;acc:p29972]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
10635.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
12111.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1476.1\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
crk-associated substrate (p130cas) (breast cancer anti-estrogen resistance 1 protein). [source:swissprot;acc:p56945]\vspace{3pt}}&&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
4808.79\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
6074.21\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.26315\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
dihydropyrimidine dehydrogenase [nadp+] precursor (ec 1.3.1.2) (dpd) (dhpdhase) (dihydrouracil dehydrogenase) (dihydrothymine dehydrogenase). [source:swissprot;acc:q12882]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
578.056\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
482.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.19755\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
egf-like-domain, multiple 7; neu1 protein. [source:refseq;acc:nm\_016215]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
242.718\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
276.018\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.1372\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
gk001 protein. [source:refseq;acc:nm\_020198]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
71062.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
95488.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.34373\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1 (ec 2.6.1.16) (hexosephosphate aminotransferase 1) (d-fructose-6- phosphate amidotransferase 1) (gfat 1) (gfat1). [source:swissprot;acc:q06210]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
1705.19\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1547.2\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
157.99\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
keratin associated protein 4-10; keratin associated protein 4.10. [source:refseq;acc:nm\_033060]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
23.8722\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
20.9333\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.14039\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitogen-activated protein kinase-activated protein kinase 3; mapkap kinase 3. [source:refseq;acc:nm\_004635]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
42411.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
55802.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
13390.5\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
muscle-specific beta 1 integrin binding protein. [source:refseq;acc:nm\_014446]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
129.158\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
488.851\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
359.693\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
oligosaccharyl transferase stt3 subunit homolog (b5) (integral membrane protein 1) (tmc). [source:swissprot;acc:p46977]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
61.2893\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
70.3856\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.14842\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
peptide chain release factor 1, mitochondrial precursor (mrf-1). [source:swissprot;acc:o75570]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
8786.74\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7870.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.11644\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, catalytic subunit, alpha isoform (ec 3.1.3.16) (pp2a-alpha) (replication protein c) (rp-c). [source:swissprot;acc:p05323]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
63.5827\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
53.0856\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10.4971\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
syntaxin 1a (neuron-specific antigen hpc-1). [source:swissprot;acc:q16623]\vspace{3pt}}&&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
11.5003\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
8.68906\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.81124\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor btf3 homolog 3. [source:swissprot;acc:q13892]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
13483.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
14685.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1202.1\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor-like protein morf4 (mortality factor 4) (cellular senescence-related protein 1) (sen1). [source:swissprot;acc:q9y690]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
5317.39\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
3738.08\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.42249\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/