Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


Navigation/Query Panel:
Click on the attribute name to hide/unhide it. The green arrows can be used to shift columns left/right. Exact word match is written as =..., regular expressions can be matched with ~.... To select all values larger or equal than use >.... This would be <... for values smaller or equal than. To select all values within a specific range use [...,...].
Rank Gene description Value Type Interaction Map Network Comparison Type Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 3101 to 3150 of 29840 in total 
Interaction Map: High confidence

\def\wcA{0.11111111111111\textwidth}
\def\wcB{0.11111111111111\textwidth}
\def\wcC{0.11111111111111\textwidth}
\def\wcD{0.11111111111111\textwidth}
\def\wcE{0.11111111111111\textwidth}
\def\wcF{0.11111111111111\textwidth}
\def\wcG{0.11111111111111\textwidth}
\def\wcH{0.11111111111111\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Filtered\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
194\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
nadph-cytochrome p450 reductase (ec 1.6.2.4) (cpr) (p450r). [source:swissprot;acc:p16435]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
241.373\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
267.352\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
25.979\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear protein ukp68. [source:refseq;acc:nm\_024824]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
227.491\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
199.458\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.14055\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription elongation factor a protein 1 (transcription elongation factor s-ii protein 1) (transcription elongation factor tfiis.o). [source:swissprot;acc:p23193]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\multirow{6}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
125.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
103.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.21256\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
uridine kinase-like 1. [source:swissprot;acc:q9nwz5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
269.31\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
688.46\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
419.15\vspace{3pt}}\\\cline{1-3}\cline{6-8}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
195\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
40s ribosomal protein s28. [source:swissprot;acc:p25112]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
12967.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
14193.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1226.5\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
adp-ribosylation factor-like protein 7 (adp-ribosylation factor-like protein lak). [source:swissprot;acc:p56559]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
23\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.21053\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
aldehyde dehydrogenase 8 (ec 1.2.1.5). [source:swissprot;acc:p48448]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
1475.05\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1312.91\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
162.14\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
blood group rh(ce) polypeptide (rhesus c/e antigens) (rh30a) (rhixb) (rh polypeptide 1) (rhpi). [source:swissprot;acc:p18577]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
479.423\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
335.966\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.427\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
cholinephosphate cytidylyltransferase b (ec 2.7.7.15) (phosphorylcholine transferase b) (ctp:phosphocholine cytidylyltransferase b) (ct b) (cct b) (cct-beta). [source:swissprot;acc:q9y5k3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
241.373\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
267.352\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
25.979\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
cyclin g1 (cyclin g). [source:swissprot;acc:p51959]\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
17738.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
13995.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.26743\vspace{3pt}}\\\cline{3-4}\cline{6-8}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
116.707\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
106.044\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10.663\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
filamin a (alpha-filamin) (filamin 1) (endothelial actin-binding protein) (abp-280) (nonmuscle filamin). [source:swissprot;acc:p21333]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
608.191\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
190.865\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
417.326\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
huntingtin interacting protein c. [source:refseq;acc:nm\_012272]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
227.971\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
200.417\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.13748\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
keratin associated protein 2-4; keratin associated protein 2.4. [source:refseq;acc:nm\_033184]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
23.8722\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
20.933\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.14041\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
liv-1 protein, estrogen regulated. [source:refseq;acc:nm\_012319]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
59.6399\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
51.9242\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.1486\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial 28s ribosomal protein s22 (s22mt) (mrp-s22) (gk002). [source:swissprot;acc:p82650]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
13942.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
15586.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.11788\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
neuronal acetylcholine receptor protein, alpha-6 chain precursor. [source:swissprot;acc:q15825]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
42411.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
55802.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
13390.5\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
protein cgi-126 (protein hspc155). [source:swissprot;acc:q9y3c8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
3074.57\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
4567.51\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1492.94\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
t-complex protein 1, zeta subunit (tcp-1-zeta) (cct-zeta) (cct-zeta-1) (tcp20) (htr3). [source:swissprot;acc:p40227]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
16.3248\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
19.168\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.8432\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
translocon-associated protein, delta subunit precursor (trap-delta) (signal sequence receptor delta subunit) (ssr-delta). [source:swissprot;acc:p51571]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
71062.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
95488.9\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.34373\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
196\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
aquaporin 4 (wch4) (mercurial-insensitive water channel) (miwc). [source:swissprot;acc:p55087]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
10640.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
12117.8\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1477.6\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
blood group rh(d) polypeptide (rhesus d antigen) (rhxiii) (rh polypeptide 2) (rhpii). [source:swissprot;acc:q02161]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
479.099\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
335.74\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.42699\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
calsyntenin-1 precursor. [source:swissprot;acc:o94985]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71062.4\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
95488.9\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.34373\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
dna mismatch repair protein mlh1 (mutl protein homolog 1). [source:swissprot;acc:p40692]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
2758.07\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
3161.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
403.63\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
forkhead box p4; fork head-related protein like a; winged-helix repressor foxp4. [source:refseq;acc:nm\_138457]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
263.215\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
231.407\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.13745\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
glutamate decarboxylase, 65 kda isoform (ec 4.1.1.15) (gad-65) (65 kda glutamic acid decarboxylase). [source:swissprot;acc:q05329]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
59.6399\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
51.9242\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.1486\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
glycogenin-2 (ec 2.4.1.186) (gn-2) (gn2). [source:swissprot;acc:o15488]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
13653.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
14874\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1220.2\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
hpaii tiny  fragments locus 9c. [source:refseq;acc:nm\_022727]\vspace{3pt}}&&&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
272.781\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
246.892\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
25.889\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
keratin associated protein 4.3 (fragment). [source:sptrembl;acc:q9byr4]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
23.8722\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
20.9332\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.1404\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
my016 protein. [source:sptrembl;acc:q9h3k6]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
37.7009\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
34.862\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.8389\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
nitrogen fixation cluster-like. [source:refseq;acc:nm\_014301]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
42411.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
55802.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
13390.5\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 56 kda regulatory subunit, alpha isoform (pp2a, b subunit, b' alpha isoform) (pp2a, b subunit, b56 alpha isoform) (pp2a, b subunit, pr61 alpha isoform) (pp2a, b subunit, r5 alpha isoform). [source:swissprot;acc:q15172]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
116.707\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
106.044\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10.663\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 56 kda regulatory subunit, epsilon isoform (pp2a, b subunit, b' epsilon isoform) (pp2a, b subunit, b56 epsilon isoform) (pp2a, b subunit, pr61 epsilon isoform) (pp2a, b subunit, r5 epsilon isoform). [source:swissprot;acc:q16537]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
17738.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
13995.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.26742\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
suppressor of ty 5 homolog; suppressor of ty (s.cerevisiae) 5 homolog. [source:refseq;acc:nm\_003169]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
11064.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
9897.84\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.11784\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
t-complex protein 1, zeta subunit (tcp-1-zeta) (cct-zeta) (cct-zeta-1) (tcp20) (htr3). [source:swissprot;acc:p40227]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
465.37\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
562.085\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.20782\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
uncharacterized bone marrow protein bm033. [source:refseq;acc:nm\_018452]\vspace{3pt}}&&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
1475.05\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1312.91\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
162.14\vspace{3pt}}\\\cline{1-3}\cline{5-8}
\multirow{14}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
197\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
60s ribosomal protein l32. [source:swissprot;acc:p02433]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
241.13\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
266.969\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
25.839\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
aquaporin 5. [source:swissprot;acc:p55064]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
10640\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
12117.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1477.6\vspace{3pt}}\\\cline{2-2}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ba395l14.12 (novel protein similar to small nuclear ribonucleoprotein polypeptide a' (snrpa1)). [source:sptrembl;acc:q9nu36]\vspace{3pt}}&&&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
743.066\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
904.149\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
161.083\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
blood group rh(ce) polypeptide (rhesus c/e antigens) (rh30a) (rhixb) (rh polypeptide 1) (rhpi). [source:swissprot;acc:p18577]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
479.099\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
335.74\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.42699\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
cylindromatosis (turban tumor syndrome); cylindromatosis 1, turban tumor syndrome. [source:refseq;acc:nm\_015247]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
34.0153\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
31.1803\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
2.835\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
dipeptidyl aminopeptidase-like protein 6 (dipeptidylpeptidase vi) (dipeptidylpeptidase 6) (dipeptidyl peptidase iv like protein) (dipeptidyl aminopeptidase-related protein) (dppx). [source:swissprot;acc:p42658]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
2145.97\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1784.22\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.20275\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
forkhead box protein p1 (hspc215). [source:swissprot;acc:q9h334]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
263.215\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
231.407\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.13745\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
gamma-soluble nsf attachment protein (snap-gamma) (n-ethylmaleimide- sensitive factor attachment protein, gamma). [source:swissprot;acc:q99747]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
59.6399\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
51.9242\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.1486\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
glycine cleavage system h protein, mitochondrial precursor. [source:swissprot;acc:p23434]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
0\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
387.336\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
770.962\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
383.626\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
importin 4. [source:refseq;acc:nm\_024658]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
12337.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
13788.9\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.11763\vspace{3pt}}\\\cline{2-3}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
keratin associated protein 1.5. [source:refseq;acc:nm\_031957]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&&\parbox{\wcF}{\vspace{3pt}\noindent
23.8722\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
20.9331\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.1404\vspace{3pt}}\\\cline{2-2}\cline{4-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
luc7-like 2; cgi-74 protein; cgi-59 protein. [source:refseq;acc:nm\_016019]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
55.2859\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
65.9288\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10.6429\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 56 kda regulatory subunit, alpha isoform (pp2a, b subunit, b' alpha isoform) (pp2a, b subunit, b56 alpha isoform) (pp2a, b subunit, pr61 alpha isoform) (pp2a, b subunit, r5 alpha isoform). [source:swissprot;acc:q15172]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
17738.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
13995.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
1.26742\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
star-related lipid transfer protein 13 (stard13) (start domain- containing protein 13) (46h23.2). [source:swissprot;acc:q9y3m8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
42411.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
55802.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
13390.5\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/