Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
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Value Type Interaction Map description Network Comparison Type Rank Gene Filtered red green network_comparison
Results: HTML CSV LaTeX
Showing element 32 to 81 of 3228 in total
Value Type: Measured
Interaction Map: High confidence
Network Comparison Type: Divided
Filtered: 1

\def\wcA{0.16666666666667\textwidth}
\def\wcB{0.16666666666667\textwidth}
\def\wcC{0.16666666666667\textwidth}
\def\wcD{0.16666666666667\textwidth}
\def\wcE{0.16666666666667\textwidth}
\begin{longtable}{|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
26s proteasome non-atpase regulatory subunit 13 (26s proteasome regulatory subunit s11) (26s proteasome regulatory subunit p40.5). [source:swissprot;acc:q9unm6]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1585\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5858.48\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6278.32\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07166\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
26s proteasome non-atpase regulatory subunit 2 (26s proteasome regulatory subunit s2) (26s proteasome subunit p97) (tumor necrosis factor type 1 receptor associated protein 2) (55.11 protein). [source:swissprot;acc:q13200]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1241\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6436.19\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6980.13\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08451\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
26s proteasome non-atpase regulatory subunit 3 (26s proteasome regulatory subunit s3) (proteasome subunit p58). [source:swissprot;acc:o43242]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1546\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5819.39\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6244.37\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07303\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
26s proteasome non-atpase regulatory subunit 4 (26s proteasome regulatory subunit s5a) (rpn10) (multiubiquitin chain binding protein) (antisecretory factor-1) (af) (asf). [source:swissprot;acc:p55036]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1979\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5475.74\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5800.97\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05939\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
26s proteasome non-atpase regulatory subunit 6 (26s proteasome regulatory subunit s10) (p42a) (proteasome regulatory particle subunit p44s10). [source:swissprot;acc:q15008]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1472\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5984.47\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6435.42\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07535\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
26s proteasome non-atpase regulatory subunit 7 (26s proteasome regulatory subunit s12) (proteasome subunit p40) (mov34 protein homolog). [source:swissprot;acc:p51665]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1571\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5851.64\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6273.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07208\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
26s proteasome non-atpase regulatory subunit 8 (26s proteasome regulatory subunit s14) (p31). [source:swissprot;acc:p48556]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1536\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5916.05\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6350.53\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07344\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
26s proteasome non-atpase regulatory subunit 9 (26s proteasome regulatory subunit p27). [source:swissprot;acc:o00233]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1517\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5996.14\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6439.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07393\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
26s proteasome-associated pad1 homolog. [source:refseq;acc:nm\_005805]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1643\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5782.92\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6186.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.06977\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
27 kda golgi snare protein (golgi snap receptor complex member 2) (membrin). [source:swissprot;acc:o14653]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2720\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5603.24\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5583.64\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00351\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
28s ribosomal protein s12, mitochondrial precursor (mpr-s12) (mt- rps12). [source:swissprot;acc:o15235]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2153\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3560.63\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3381.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05302\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
28s ribosomal protein s16, mitochondrial precursor (mrp-s16) (cgi- 132). [source:swissprot;acc:q9y3d3]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1955\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5195.3\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5510.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0607\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
28s ribosomal protein s17, mitochondrial precursor (mrp-s17) (hspc011). [source:swissprot;acc:q9y2r5]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
115\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
21185\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
28492\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.34491\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
28s ribosomal protein s18a, mitochondrial precursor (mrp-s18-a) (mrps18a) (mrp-s18-3). [source:swissprot;acc:q9nvs2]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
835\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5623.18\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6218.77\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.10592\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
28s ribosomal protein s26, mitochondrial precursor (mrp-s26) (mrp- s13). [source:swissprot;acc:q9byn8]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2071\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6437.24\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6797.24\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05592\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
28s ribosomal protein s9, mitochondrial precursor (mrp-s9). [source:swissprot;acc:p82933]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2530\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3880.5\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3788.42\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02431\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
3 beta-hydroxy-delta 5-c27-steroid oxidoreductase. [source:refseq;acc:nm\_025193]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
3147\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
3 beta-hydroxysteroid dehydrogenase (fragments). [source:sptrembl;acc:q9udk8]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2756\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
3 beta-hydroxysteroid dehydrogenase/delta 5-->4-isomerase type i (3beta-hsd i) (trophoblast antigen fdo161g) [includes: 3-beta-hydroxy- delta(5)-steroid dehydrogenase (ec 1.1.1.145) (3-beta-hydroxy-5-ene steroid dehydrogenase) (progesterone reductase); steroid delta- isomerase (ec 5.3.3.1) (delta-5-3-ketosteroid isomerase)]. [source:swissprot;acc:p14060]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2802\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
3-hydroxy-3-methylglutaryl-coenzyme a reductase (ec 1.1.1.34) (hmg-coa reductase). [source:swissprot;acc:p04035]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2302\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6946.6\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7263.68\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04565\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
3-hydroxyacyl-coa dehydrogenase type ii (ec 1.1.1.35) (type ii hadh) (endoplasmic reticulum-associated amyloid beta-peptide binding protein) (short-chain type dehydrogenase/reductase xh98g2). [source:swissprot;acc:q99714]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
3180\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
3-hydroxyanthranilate 3,4-dioxygenase (ec 1.13.11.6) (3-hao) (3-hydroxyanthranilic acid dioxygenase) (3-hydroxyanthranilate oxygenase). [source:swissprot;acc:p46952]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2105\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6916.14\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7295.24\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05481\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
3-hydroxyisobutyryl-coenzyme a hydrolase. [source:refseq;acc:nm\_014362]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1898\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6885.11\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7317.48\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0628\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
3-ketoacyl-coa thiolase, peroxisomal precursor (ec 2.3.1.16) (beta- ketothiolase) (acetyl-coa acyltransferase) (peroxisomal 3-oxoacyl- coa thiolase). [source:swissprot;acc:p09110]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2305\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6946.82\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7263.87\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04564\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
3-mercaptopyruvate sulfurtransferase (ec 2.8.1.2) (mst). [source:swissprot;acc:p25325]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
563\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5480.24\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6222.04\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.13536\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
3-oxo-5-alpha-steroid 4-dehydrogenase 1 (ec 1.3.99.5) (steroid 5-alpha-reductase 1) (sr type 1) (s5ar). [source:swissprot;acc:p18405]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1274\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5885\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6371.14\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.08261\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
3-oxo-5-alpha-steroid 4-dehydrogenase 2 (ec 1.3.99.5) (steroid 5-alpha-reductase 2) (sr type 2) (5 alpha-sr2). [source:swissprot;acc:p31213]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1275\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
3-phosphoinositide dependent protein kinase-1 (ec 2.7.1.37) (hpdk1). [source:swissprot;acc:o15530]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2547\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3370.46\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3444.18\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02187\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
38 kda fk-506 binding protein homolog (fkbpr38) (fk506-binding protein 8). [source:swissprot;acc:q14318]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2261\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6486.84\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6786.23\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04615\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
4-aminobutyrate aminotransferase, mitochondrial precursor (ec 2.6.1.19) (gamma-amino-n-butyrate transaminase) (gaba transaminase) (gaba aminotransferase) (gaba-at) (gaba-t). [source:swissprot;acc:p80404]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1469\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5473.09\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5887.45\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07571\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s11. [source:swissprot;acc:p04643]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1873\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3618.46\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3402.09\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0636\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s13. [source:swissprot;acc:q02546]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1498\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5414.98\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5818.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07456\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s14 (pro2640). [source:swissprot;acc:p06366]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2436\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3708.67\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3584.47\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.03465\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s15 (rig protein). [source:swissprot;acc:p11174]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2067\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3602.75\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3411.18\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05616\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s15a. [source:swissprot;acc:p39027]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2008\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3637.47\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3435.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05876\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s16. [source:swissprot;acc:p17008]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2448\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3730.53\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3611.05\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.03309\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s18 (ke-3) (ke3). [source:swissprot;acc:p25232]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2437\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3708.67\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3584.47\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.03465\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s19. [source:swissprot;acc:p39019]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
807\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4708.61\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5226.71\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.11003\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s2 (s4) (llrep3 protein). [source:swissprot;acc:p15880]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2242\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3670.45\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3504.91\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04723\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s20. [source:swissprot;acc:p17075]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2211\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3590.56\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3422.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04907\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s21. [source:swissprot;acc:p35265]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2403\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5078.5\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5275.76\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.03884\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s23. [source:swissprot;acc:p39028]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2152\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3560.63\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3381.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05302\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s24 (s19). [source:swissprot;acc:p16632]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1599\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5184.45\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5554.97\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07147\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s26. [source:swissprot;acc:p02383]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1655\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5488.7\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5131.89\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.06953\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s27 (metallopan-stimulin 1) (mps-1). [source:swissprot;acc:p42677]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2126\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4806.33\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5066.92\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05422\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s28. [source:swissprot;acc:p25112]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
700\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7161.14\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8015.92\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.11936\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s29. [source:swissprot;acc:p30054]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1756\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3582.57\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3357.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.067\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s3. [source:swissprot;acc:p23396]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2235\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3674.29\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3508.13\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04736\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s30. [source:swissprot;acc:q05472]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1145\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5893.97\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6416.07\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08858\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
40s ribosomal protein s3a. [source:swissprot;acc:p49241]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2263\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4918.64\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5145.39\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0461\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/