Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 3012 to 3061 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
753\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
myosin light chain 1, slow-twitch muscle a isoform (mlc1sa) (alkali). [source:swissprot;acc:p14649]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4565.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5085.92\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11403\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
754\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, gamma-3 subunit (ampk gamma-3 chain) (ampk gamma3). [source:swissprot;acc:q9ugi9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
66.9737\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71.4637\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06704\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
branched-chain amino acid aminotransferase, cytosolic (ec 2.6.1.42) (bcat(c)) (eca39 protein). [source:swissprot;acc:p54687]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
23958.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27945.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16639\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
microsomal signal peptidase 25 kda subunit (ec 3.4.-.-) (spase 25 kda subunit) (spc25). [source:swissprot;acc:q15005]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.434\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
235.583\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04968\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin light chain 1, embryonic muscle/atrial isoform (pro1957). [source:swissprot;acc:p12829]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4565.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5085.92\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11403\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
755\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, beta-1 subunit (ampk beta-1 chain) (ampkb). [source:swissprot;acc:q9y478]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
66.9737\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71.4637\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06704\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
branched-chain amino acid aminotransferase, mitochondrial precursor (ec 2.6.1.42) (bcat(m)) (placental protein 18) (pp18). [source:swissprot;acc:o15382]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
23966.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27952.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16631\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleolar rna-associated protein alpha isoform. [source:refseq;acc:nm\_022917]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4079.81\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4545.01\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11402\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
uridine 5'-monophosphate synthase (ump synthase) [includes: orotate phosphoribosyltransferase (ec 2.4.2.10) (oprtase); orotidine 5'- phosphate decarboxylase (ec 4.1.1.23) (ompdecase)]. [source:swissprot;acc:p11172]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.434\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
235.583\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04968\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
756\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, gamma-2 subunit (ampk gamma-2 chain) (ampk gamma2) (h91620p). [source:swissprot;acc:q9ugj0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
66.9737\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71.4637\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06704\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cleft lip and palate associated transmembrane protein 1. [source:refseq;acc:nm\_001294]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.434\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
235.583\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04968\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
topoisomerase-related function protein 4-2. [source:refseq;acc:nm\_022447]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4725.28\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5261.06\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11339\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transducin-like enhancer protein 4. [source:swissprot;acc:q04727]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
31298\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36502\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16627\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
757\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
bactericidal permeability-increasing protein precursor (bpi) (cap 57). [source:swissprot;acc:p17213]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.434\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
235.583\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04968\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
signal recognition particle 68 kda protein (srp68). [source:swissprot;acc:q9uhb9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5622.89\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6260.02\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11331\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
splicing factor 3a subunit 2 (spliceosome associated protein 62) (sap 62) (sf3a66). [source:swissprot;acc:q15428]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
20248.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23608.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16591\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquinol-cytochrome c reductase complex core protein i, mitochondrial precursor (ec 1.10.2.2). [source:swissprot;acc:p31930]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.4457\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64.4918\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06694\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
758\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna polymerase epsilon subunit b (ec 2.7.7.7) (dna polymerase ii subunit b). [source:swissprot;acc:p56282]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3760.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4185.82\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11316\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
krueppel-like factor 5 (intestinal-enriched krueppel-like factor) (colon krueppel-like factor) (transcription factor bteb2) (basic transcription element binding protein 2) (bte-binding protein 2) (gc box binding protein 2). [source:swissprot;acc:q13887]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
20248.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23608.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16591\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
phospholipid transfer protein precursor (lipid transfer protein ii). [source:swissprot;acc:p55058]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.434\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
235.583\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04968\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase (ec 2.1.1.61). [source:swissprot;acc:o75648]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
96.6463\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
103.103\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06681\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
759\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
6-phosphofructokinase, type c (ec 2.7.1.11) (phosphofructokinase 1) (phosphohexokinase) (phosphofructo-1-kinase isozyme c) (pfk-c) (6-phosphofructokinase, platelet type). [source:swissprot;acc:q01813]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4254.62\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4736.03\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11315\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
coatomer alpha subunit (alpha-coat protein) (alpha-cop) (hepcop) (hep-cop) [contains: xenin (xenopsin-related peptide); proxenin]. [source:swissprot;acc:p53621]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
49280.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
42272.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16578\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nascent-polypeptide-associated complex alpha polypeptide. [source:refseq;acc:nm\_005594]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
66.9416\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71.4055\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06668\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
osteoclast stimulating factor 1. [source:swissprot;acc:q92882]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
231.809\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
243.289\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04952\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
760\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
atpase, h+ transporting, lysosomal 38kda, v0 subunit d isoform 2. [source:refseq;acc:nm\_152565]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5870.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6533.39\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11298\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
c18b11 homolog (44.9kd). [source:refseq;acc:nm\_152260]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
21186.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
24698.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16576\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
small gtp-binding tumor suppressor 1. [source:refseq;acc:nm\_145173]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
66.9397\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71.4023\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06667\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
upf0202 protein kiaa1709. [source:swissprot;acc:q9h0a0]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
246.055\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
234.458\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04946\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
761\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
alpha-nac protein. [source:sptrembl;acc:q9h009]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
66.9404\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71.4035\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06667\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
signal transduction protein cbl-b (sh3-binding protein cbl-b). [source:swissprot;acc:q13191]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
213.325\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
203.303\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0493\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
translation initiation factor if-2. [source:swissprot;acc:o60841]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5811.51\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6467.62\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1129\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
z-protein (protein cgi-119) (s1r protein). [source:swissprot;acc:q9hc24]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
21186.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
24698.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16576\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
762\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cbl e3 ubiquitin protein ligase (ec 6.3.2.-) (signal transduction protein cbl) (proto-oncogene c-cbl). [source:swissprot;acc:p22681]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
213.256\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
203.237\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0493\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
di-ras2. [source:refseq;acc:nm\_017594]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
66.9397\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71.4022\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06666\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
pms1 protein homolog 2 (dna mismatch repair protein pms2). [source:swissprot;acc:p54278]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6231.31\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6933.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11275\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
pp1201 protein. [source:refseq;acc:nm\_022152]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
21186.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
24698.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16576\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
763\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
6-phosphofructokinase, muscle type (ec 2.7.1.11) (phosphofructokinase 1) (phosphohexokinase) (phosphofructo-1-kinase isozyme a) (pfk-a) (phosphofructokinase-m). [source:swissprot;acc:p08237]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4250.54\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4729.67\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11272\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
lifeguard; kiaa0950 protein. [source:refseq;acc:nm\_012306]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
21186.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
24698.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16576\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
putative n6-dna-methyltransferase (ec 2.1.1.-) (protein pred28) (m.hsahemk2p). [source:swissprot;acc:q9y5n5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
228.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
218.091\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04901\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
tata-binding protein-associated phosphoprotein (down-regulator of transcription 1) (dr1 protein). [source:swissprot;acc:q01658]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.3269\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64.3387\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0665\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
764\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
6-phosphofructokinase, liver type (ec 2.7.1.11) (phosphofructokinase 1) (phosphohexokinase) (phosphofructo-1-kinase isozyme b) (pfk-b). [source:swissprot;acc:p17858]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4250.18\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4729.12\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11269\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cystathionine beta-synthase (ec 4.2.1.22) (serine sulfhydrase) (beta-thionase). [source:swissprot;acc:p35520]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
63.5181\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.7402\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06647\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sterol regulatory element binding protein-2 (srebp-2) (sterol regulatory element-binding transcription factor 2). [source:swissprot;acc:q12772]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
21186.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
24698.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16576\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
u4/u6-associated rna splicing factor. [source:refseq;acc:nm\_004698]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
222.082\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
211.707\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.04901\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
765\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
hemk protein homolog (ec 2.1.1.-) (m.hsahemkp). [source:swissprot;acc:q9y5r4]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
229.045\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
218.343\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
polymerase (dna directed) sigma; topoisomerase-related function protein 4-1; polymerase (dna-directed) sigma. [source:refseq;acc:nm\_006999]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4726.38\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5258.95\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11268\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sterol regulatory element binding protein-1 (srebp-1) (sterol regulatory element-binding transcription factor 1). [source:swissprot;acc:p36956]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
21186.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
24698.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16576\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transforming protein rhoc (h9). [source:swissprot;acc:p08134]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
63.5181\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
67.7402\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06647\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
766\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
atp synthase gamma chain, mitochondrial precursor (ec 3.6.3.14). [source:swissprot;acc:p36542]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24509.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
28571.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16574\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/