Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2964 to 3013 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
741\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear protein skip (ski-interacting protein) (snw1 protein) (nuclear receptor coactivator ncoa-62). [source:swissprot;acc:q13573]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
23894.7\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27894.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16739\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
742\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
brain protein 44. [source:swissprot;acc:o95563]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
126.215\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
120.078\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05111\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 3 subunit 4 (eif-3 delta) (eif3 p44) (eif-3 rna-binding subunit) (eif3 p42) (eif3g). [source:swissprot;acc:o75821]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4131.04\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4607.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11543\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
homeobox protein engrailed-2 (hu-en-2). [source:swissprot;acc:p19622]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
31406.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36662.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16736\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor btf3 (rna polymerase b transcription factor 3). [source:swissprot;acc:p20290]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
67.0234\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71.5506\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06755\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
743\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cpg binding protein (protein containing phd finger and cxxc domain 1). [source:swissprot;acc:q9p0u4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
31406.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36662.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16736\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 3 subunit 10 (eif-3 theta) (eif3 p167) (eif3 p180) (eif3 p185) (eif3a). [source:swissprot;acc:q14152]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4131.04\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4607.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11543\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
katanin p60 subunit a 1. [source:refseq;acc:nm\_007044]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
54.4988\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
51.0573\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0674\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
septin 7 (cdc10 protein homolog). [source:swissprot;acc:q16181]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
126.215\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
120.078\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05111\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
744\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
activator of basal transcription 1; tata-binding protein-binding protein; basal transcriptional activator. [source:refseq;acc:nm\_013375]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
31406.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36662.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16736\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cytidine triphosphate synthase ii; ctp synthetase type 2; utp-ammonia ligase; ctp synthetase isoform; cytidine 5'-triphosphate synthetase 2. [source:refseq;acc:nm\_019857]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
12515.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11221.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11535\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dynactin 4. [source:refseq;acc:nm\_032486]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
55.2242\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
51.7372\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0674\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
septin 6. [source:swissprot;acc:q14141]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
126.604\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
120.463\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05098\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
745\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cytokine-like nuclear factor n-pac. [source:refseq;acc:nm\_032569]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
31406.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36662.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16736\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
neuroepithelial cell transforming gene 1; guanine nucleotide regulatory protein (oncogene); rho guanine nucleotide exchange factor (gef) 8. [source:refseq;acc:nm\_005863]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4086.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4557.68\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11527\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
solute carrier family 35, member b1; udp-galactose transporter related. [source:refseq;acc:nm\_005827]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
214.679\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
225.568\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05072\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor btf3 homolog 3. [source:swissprot;acc:q13892]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
67.0475\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71.5566\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06725\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
746\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 3 subunit 2 (eif-3 beta) (eif3 p36) (eif3i) (tgf-beta receptor interacting protein 1) (trip-1). [source:swissprot;acc:q13347]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
250.465\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
238.38\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0507\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
hect type e3 ubiquitin ligase. [source:refseq;acc:nm\_015052]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
31406.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36662.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16736\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
katanin p80 subunit b 1; katanin (80 kda); katanin p80 (wd40-containing) subunit b 1. [source:refseq;acc:nm\_005886]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
54.5195\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
51.084\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06725\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
rho guanine nucleotide exchange factor 3; rhogef protein; 59.8 kda protein; exchange factor found in platelets and leukemic and neuronal tissues, xpln. [source:refseq;acc:nm\_019555]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
4086.6\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
4557.68\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.11527\vspace{3pt}}}\\\cline{1-2}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
747\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
down-regulated in metastasis. [source:refseq;acc:nm\_014503]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sr rich protein. [source:refseq;acc:nm\_032870]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
61.4809\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
65.6088\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06714\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transducin-like enhancer protein 3 (esg3). [source:swissprot;acc:q04726]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
31401.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
36655.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16731\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
trinucleotide repeat containing 15. [source:refseq;acc:nm\_015575]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
250.465\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
238.38\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0507\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
748\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
breast carcinoma amplified sequence 2; spliceosome associated protein, amplified in breast cancer. [source:refseq;acc:nm\_005872]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
23148.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27021.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1673\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ctp synthase (ec 6.3.4.2) (utp--ammonia ligase) (ctp synthetase). [source:swissprot;acc:p17812]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
12503.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
11212\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11517\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
fibrillarin (34 kda nucleolar scleroderma antigen). [source:swissprot;acc:p22087]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
245.246\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
233.483\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05038\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial processing peptidase beta subunit, mitochondrial precursor (ec 3.4.24.64) (beta-mpp) (p-52). [source:swissprot;acc:o75439]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.4376\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64.4898\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06705\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
749\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, gamma-1 subunit (ampk gamma-1 chain) (ampkg). [source:swissprot;acc:p54619]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
66.9737\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71.4637\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06704\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cdc5-like; cdc5 (cell division cycle 5, s. pombe, homolog)-like; cell division cycle 5, s. pombe, homolog-like; cdc5-related protein. [source:refseq;acc:nm\_001253]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
23148.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
27021.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.1673\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ethanolamine-phosphate cytidylyltransferase (ec 2.7.7.14) (phosphorylethanolamine transferase) (ctp:phosphoethanolamine cytidylyltransferase). [source:swissprot;acc:q99447]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4565.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5085.92\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11403\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
exocyst complex component sec15b. [source:swissprot;acc:q9y2d4]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
221.968\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
211.326\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05036\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
750\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
exocyst complex component sec15a. [source:swissprot;acc:q8tag9]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
222.138\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
211.503\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05028\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial processing peptidase alpha subunit, mitochondrial precursor (ec 3.4.24.64) (alpha-mpp) (p-55) (ha1523). [source:swissprot;acc:q10713]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.4385\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64.49\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06704\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin light chain 1, skeletal muscle isoform (mlc1f) (a1 catalytic) (alkali). [source:swissprot;acc:p05976]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4565.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5085.92\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11403\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
n-acetyltransferase 5 (ec 2.3.1.-). [source:swissprot;acc:q9y6d2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
21678.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
25303.3\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16721\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
751\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, catalytic alpha-2 chain (ec 2.7.1.-) (ampk alpha-2 chain). [source:swissprot;acc:p54646]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
66.9738\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71.4638\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06704\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ba395l14.12 (novel protein similar to small nuclear ribonucleoprotein polypeptide a' (snrpa1)). [source:sptrembl;acc:q9nu36]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
20305.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23689.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16663\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin light chain 1, slow-twitch muscle b/ventricular isoform (mlc1sb) (alkali). [source:swissprot;acc:p08590]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4565.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5085.92\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11403\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
u2 small nuclear ribonucleoprotein auxiliary factor 35 kda subunit related-protein 1. [source:swissprot;acc:q15695]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
223.463\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212.875\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04974\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
752\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, catalytic alpha-1 chain (ec 2.7.1.-) (ampk alpha-1 chain). [source:swissprot;acc:q13131]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
66.9736\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71.4636\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06704\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nadh-ubiquinone oxidoreductase 13 kda-a subunit, mitochondrial precursor (ec 1.6.5.3) (ec 1.6.99.3) (complex i-13kd-a) (ci-13kd-a). [source:swissprot;acc:o75380]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4565.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5085.92\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11403\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
step ii splicing factor slu7. [source:refseq;acc:nm\_006425]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
223.463\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
212.875\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04974\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
u2 small nuclear ribonucleoprotein a' (u2 snrnp-a'). [source:swissprot;acc:p09661]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
20305.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
23689.4\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16663\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
753\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, beta-2 subunit (ampk beta-2 chain). [source:swissprot;acc:o43741]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
66.9737\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71.4637\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06704\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
biotin--protein ligase (ec 6.3.4.-) (biotin apo-protein ligase) [includes: biotin--[methylmalonyl-coa-carboxyltransferase] ligase (ec 6.3.4.9); biotin--[propionyl-coa-carboxylase [atp-hydrolyzing]] ligase (ec 6.3.4.10) (holocarboxylase synthetase) (hcs); biotin--[methylcrotonoyl-coa-carboxylase] ligase (ec 6.3.4.11); biotin--[acetyl-coa-carboxylase] ligase (ec 6.3.4.15)]. [source:swissprot;acc:p50747]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
24183.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
28211.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.16654\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
lipopolysaccharide-binding protein precursor (lbp). [source:swissprot;acc:p18428]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
224.434\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
235.583\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.04968\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
myosin light chain 1, slow-twitch muscle a isoform (mlc1sa) (alkali). [source:swissprot;acc:p14649]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4565.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5085.92\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.11403\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
754\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, gamma-3 subunit (ampk gamma-3 chain) (ampk gamma3). [source:swissprot;acc:q9ugi9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
66.9737\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
71.4637\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.06704\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/