Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
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Rank Gene Hugo Network Comparison Type description Value Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX
Showing element 2951 to 3000 of 66312 in total
Filtered: 1

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\def\wcB{0.1\textwidth}
\def\wcC{0.1\textwidth}
\def\wcD{0.1\textwidth}
\def\wcE{0.1\textwidth}
\def\wcF{0.1\textwidth}
\def\wcG{0.1\textwidth}
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\begin{longtable}{|c|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{10}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
185\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
FCN2\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
ficolin 2 precursor (collagen/fibrinogen domain-containing protein 2) (ficolin-b) (ficolin b) (serum lectin p35) (ebp-37) (hucolin) (l- ficolin). [source:swissprot;acc:q15485]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
5334.13\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5933.4\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
599.27\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
HGS\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
hepatocyte growth factor-regulated tyrosine kinase substrate; human growth factor-regulated tyrosine kinase substrate. [source:refseq;acc:nm\_004712]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
70830.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
56822\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
14008.5\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
HNRNPR\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
heterogeneous nuclear ribonucleoprotein r (hnrnp r). [source:swissprot;acc:o43390]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
4069.83\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5252.17\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.29051\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
HS3ST6\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
c439a6.1 (novel protein similar to heparan sulfate (glucosamine) 3-o- sulfotransferases) (fragment). [source:sptrembl;acc:q96qi5]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
41502.9\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
30836.8\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.34589\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAP1LC3B\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
microtubule-associated proteins 1a/1b light chain 3b (map1a/map1b lc3 b) (map1a/1b light chain 3 b). [source:swissprot;acc:q9gzq8]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
153.578\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
133.176\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.1532\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
PPP2R1B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 65 kda regulatory subunit a, beta isoform (pp2a, subunit a, pr65-beta isoform) (pp2a, subunit a, r1-beta isoform). [source:swissprot;acc:p30154]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
4599.26\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3058.57\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1540.69\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
PRKAG3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5'-amp-activated protein kinase, gamma-3 subunit (ampk gamma-3 chain) (ampk gamma3). [source:swissprot;acc:q9ugi9]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
54659.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
49230.2\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.11029\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
RGS20\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
regulator of g-protein signaling 20 (rgs20) (regulator of gz- selective protein signaling 1) (gz-selective gtpase-activating protein) (g(z)gap). [source:swissprot;acc:o76081]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
47.6504\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
36.9304\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
10.72\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
TMEM33\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
db83 protein. [source:swissprot;acc:p57088]\vspace{3pt}}&&\multirow{5}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
57.5193\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
53.0965\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
4.4228\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
TPM3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
tropomyosin alpha 3 chain (tropomyosin 3) (tropomyosin gamma). [source:swissprot;acc:p06753]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
70.7318\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
75.1524\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.0625\vspace{3pt}}\\\cline{1-5}\cline{7-9}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
186\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
protein phosphatase 1, regulatory (inhibitor) subunit 14c; serologically defined breast cancer antigen ny-br-81; pkc-potentiated pp1 inhibitory protein. [source:refseq;acc:nm\_030949]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
5334.13\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5933.4\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
599.27\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
AADAT\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
alpha-aminoadipate aminotransferase; l-kynurenine/alpha-aminoadipate aminotransferase; kynurenine aminotransferase ii. [source:refseq;acc:nm\_016228]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
59947\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
66549.6\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.11014\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
COG5\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
conserved oligomeric golgi complex subunit 5 (13s golgi transport complex 90 kda subunit) (gtc-90) (golgi transport complex 1). [source:swissprot;acc:q9up83]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
215.723\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
205.046\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
10.677\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
COG7\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
conserved oligomeric golgi complex component 7. [source:swissprot;acc:p83436]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
70830.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
56822\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
14008.5\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
DNAJC12\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
j domain containing protein 1. [source:swissprot;acc:q9ukb3]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
227.357\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
254.15\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
26.793\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
EIF4G1\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 4 gamma (eif-4-gamma) (eif- 4g) (eif4g) (p220). [source:swissprot;acc:q04637]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
4071.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5251.75\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.29001\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
FLNB\vspace{3pt}}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
filamin b, beta (actin binding protein 278); beta filamin; filamin 1 (actin-binding protein-280)-like; filamin b, beta (actin-binding protein-278); filamin b, beta. [source:refseq;acc:nm\_001457]\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
226.582\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
198.444\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.14179\vspace{3pt}}\\\cline{3-3}\cline{5-5}\cline{7-9}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
4366.44\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5899.76\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1533.32\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
HPRT1\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
hypoxanthine-guanine phosphoribosyltransferase (ec 2.4.2.8) (hgprt) (hgprtase). [source:swissprot;acc:p00492]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
9896.39\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10650.5\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.0762\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
HS3ST3A1\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
heparan sulfate d-glucosaminyl 3-o-sulfotransferase 3a1; heparin-glucosamine 3-o-sulfotransferase. [source:refseq;acc:nm\_006042]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
41502.9\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
30836.8\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.34589\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
LBX1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
transcription factor lbx1. [source:swissprot;acc:p52954]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
47.6504\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
36.9304\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
10.72\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAP1LC3A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
microtubule-associated proteins 1a/1b light chain 3a (map1a/map1b lc3 a) (map1a/1b light chain 3 a). [source:swissprot;acc:q9h492]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
153.578\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
133.176\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.1532\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
RABEPK\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
rab9 effector p40. [source:refseq;acc:nm\_005833]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
51594.2\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
46458.9\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
5135.3\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
SNRPB2\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
u2 small nuclear ribonucleoprotein b". [source:swissprot;acc:p08579]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
70.6712\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
75.0934\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
4.4222\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
STAMBP\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
associated molecule with the sh3 domain of stam. [source:refseq;acc:nm\_006463]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
196.381\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
206.921\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.05367\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
TPM1\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
tropomyosin 1 alpha chain (alpha-tropomyosin). [source:swissprot;acc:p09493]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
70.7466\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
75.1547\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.06231\vspace{3pt}}\\\cline{1-2}\cline{4-5}\cline{7-9}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
187\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
ribosomal protein s6 kinase-like 1. [source:refseq;acc:nm\_031464]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
189.373\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
179.829\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.05307\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
ALG1\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
beta-1,4 mannosyltransferase. [source:refseq;acc:nm\_019109]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
9012.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
8376.35\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.0759\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
ATG4B\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
cysteine endopeptidase aut-like isoform b. [source:refseq;acc:nm\_178326]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
153.548\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
133.153\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.15317\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
ATP1B2\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
sodium/potassium-transporting atpase beta-2 chain (sodium/potassium- dependent atpase beta-2 subunit). [source:swissprot;acc:p14415]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
52543.2\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
47411.7\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
5131.5\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
CRYAB\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
alpha crystallin b chain (alpha(b)-crystallin) (rosenthal fiber component). [source:swissprot;acc:p02511]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
219.543\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
208.868\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
10.675\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
DAD1\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
defender against cell death 1 (dad-1). [source:swissprot;acc:p46966]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
6893.42\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7491.39\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
597.97\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
DUOX2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
dual oxidase 2 precursor; dual oxidase-like domains 2; nicotinamide adenine dinucleotide phosphate oxidase; flavoprotein nadph oxidase; nadph thyroid oxidase 2; nadh/nadph thyroid oxidase p138-tox; nadph oxidase/peroxidase duox2. [source:refseq;acc:nm\_014080]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
69.8853\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
74.201\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.06175\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
GPSM2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
mosaic protein lgn. [source:swissprot;acc:p81274]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
47.6504\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
36.9304\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
10.72\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
HS3ST3B1\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
heparan sulfate d-glucosaminyl 3-o-sulfotransferase 3b1. [source:refseq;acc:nm\_006041]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
41502.9\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
30836.8\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.34589\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAK\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
serine/threonine-protein kinase mak (ec 2.7.1.-) (male germ cell- associated kinase). [source:swissprot;acc:p20794]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
45399.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
50379.1\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.10969\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
NONO\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
54 kda nuclear rna- and dna-binding protein (p54(nrb)) (p54nrb) (55 kda nuclear protein) (nmt55) (non-pou domain-containing octamer- binding protein) (dna-binding p52/p100 complex, 52 kda subunit). [source:swissprot;acc:q15233]\vspace{3pt}}&&\multirow{5}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
71383\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
57399.3\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
13983.7\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
REV1\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
rev1-like; rev1 protein; rev1 (yeast homolog)- like. [source:refseq;acc:nm\_016316]\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
226.582\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
198.444\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.14179\vspace{3pt}}\\\cline{3-3}\cline{5-5}\cline{7-9}
&&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
4366.44\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5899.76\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1533.32\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
SNRPD3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein sm d3 (snrnp core protein d3) (sm-d3). [source:swissprot;acc:p43331]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
4569.48\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5885.79\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.28807\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
SNX13\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
sorting nexin 13 (rgs domain- and phox domain-containing protein) (rgs-px1). [source:swissprot;acc:q9y5w8]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
227.357\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
254.15\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
26.793\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
TPM3\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
tropomyosin alpha 3 chain (tropomyosin 3) (tropomyosin gamma). [source:swissprot;acc:p06753]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
70.7318\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
75.1524\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
4.4206\vspace{3pt}}\\\cline{1-5}\cline{7-9}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
188\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
AADAT\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
alpha-aminoadipate aminotransferase; l-kynurenine/alpha-aminoadipate aminotransferase; kynurenine aminotransferase ii. [source:refseq;acc:nm\_016228]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
9986.51\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10741.3\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.07558\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
ATP1B4\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
x/potassium-transporting atpase beta-m chain (x,k-atpase beta-m subunit). [source:swissprot;acc:q9un42]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
52525.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
47402.9\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
5122.2\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
CYC1\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
cytochrome c1, heme protein, mitochondrial precursor (cytochrome c-1). [source:swissprot;acc:p08574]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
208.591\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
219.23\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
10.639\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
DUOX1\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
dual oxidase 1 precursor; nadph thyroid oxidase 1; flavoprotein nadph oxidase; nicotinamide adenine dinucleotide phosphate oxidase. [source:refseq;acc:nm\_017434]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
69.8912\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
74.2044\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.06171\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
E2F1\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
transcription factor e2f1 (e2f-1) (retinoblastoma binding protein 3) (rbbp-3) (prb-binding protein e2f-1) (pbr3) (retinoblastoma-associated protein 1) (rbap-1). [source:swissprot;acc:q01094]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
46.0352\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
53.0192\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.15171\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
GSTO2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
ba127l20.1 (novel glutathione-s-transferase). [source:sptrembl;acc:q9h4y5]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
227.357\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
254.15\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
26.793\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
HS3ST2\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
heparan sulfate d-glucosaminyl  3-o-sulfotransferase 2; heparin-glucosamine 3-o-sulfotransferase. [source:refseq;acc:nm\_006043]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
41502.9\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
30836.8\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.34589\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
KRAS\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
transforming protein p21a (k-ras 2a) (ki-ras) (c-k-ras). [source:swissprot;acc:p01116]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
51551.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
46457.1\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.10966\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/