Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX
Showing element 2308 to 2357 of 8289 in total
Value Type: Measured
Network Comparison Type: Divided
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1154\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
tumor necrosis factor, alpha-induced protein 1, endothelial (b12 protein). [source:swissprot;acc:q13829]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5840.65\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6355.84\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08821\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1155\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
serine/threonine-protein kinase pak 2 (ec 2.7.1.-) (p21-activated kinase 2) (pak-2) (pak65) (gamma-pak) (s6/h4 kinase). [source:swissprot;acc:q13177]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8031.82\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8326.95\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03675\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transducin-like enhancer protein 4. [source:swissprot;acc:q04727]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6270.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6823.73\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0882\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1156\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cda11 protein. [source:refseq;acc:nm\_032026]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8257.17\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8560.41\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03672\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
polymerase delta-interacting protein 1; tnfaip1-like. [source:refseq;acc:nm\_178863]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
5840.77\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6355.89\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08819\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1157\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
serine hydroxymethyltransferase, cytosolic (ec 2.1.2.1) (serine methylase) (glycine hydroxymethyltransferase) (shmt). [source:swissprot;acc:p34896]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
5418.33\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5895.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08801\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
vacuolar atp synthase subunit b, kidney isoform (ec 3.6.3.14) (v- atpase b1 subunit) (vacuolar proton pump b isoform 1) (endomembrane proton pump 58 kda subunit). [source:swissprot;acc:p15313]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
8218.23\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8519.94\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03671\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1158\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
adapter-related protein complex 1 gamma 1 subunit (gamma-adaptin) (adaptor protein complex ap-1 gamma-1 subunit) (golgi adaptor ha1/ap1 adaptin gamma-1 subunit) (clathrin assembly protein complex 1 gamma-1 large chain). [source:swissprot;acc:o43747]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
7694.94\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7977.35\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0367\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
delta-aminolevulinic acid dehydratase (ec 4.2.1.24) (porphobilinogen synthase) (aladh). [source:swissprot;acc:p13716]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5489.18\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5972.09\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08797\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1159\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dead-box protein 3, y-chromosomal. [source:swissprot;acc:o15523]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8094.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8391.27\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03668\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
kccr13l. [source:refseq;acc:nm\_139179]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5538.8\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
6025.51\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.08787\vspace{3pt}}}\\\cline{1-2}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1160\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dna repair protein rad51 homolog 1 (hrad51) (hsrad51). [source:swissprot;acc:q06609]\vspace{3pt}}&&&&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
retinal rod rhodopsin-sensitive cgmp 3',5'-cyclic phosphodiesterase delta-subunit (ec 3.1.4.17) (gmp-pde delta) (p17 protein). [source:swissprot;acc:o43924]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
8114.93\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8412.5\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.03667\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1161\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
dead-box protein 3 (helicase-like protein 2) (hlp2) (dead-box, x isoform). [source:swissprot;acc:o00571]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
8094.55\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8391.39\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
n-acetyltransferase 5 (ec 2.3.1.-). [source:swissprot;acc:q9y6d2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5315.76\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5782.63\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08783\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1162\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
immature colon carcinoma transcript 1 (digestion substraction 1) (ds- 1). [source:swissprot;acc:q14197]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8052.92\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8348.1\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03666\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nemo-like kinase; likely ortholog of mouse nemo like kinase. [source:refseq;acc:nm\_016231]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5832.13\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6343.59\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0877\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1163\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
caax prenyl protease 1 homolog (ec 3.4.24.-) (prenyl protein-specific endoprotease 1) (farnesylated-proteins converting enzyme 1) (face-1) (zinc metalloproteinase ste24 homolog). [source:swissprot;acc:o75844]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7839.14\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8126.46\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03665\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
elks protein. [source:refseq;acc:nm\_015064]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5832.13\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6343.59\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0877\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1164\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
carboxypeptidase a4 precursor (ec 3.4.17.-) (carboxypeptidase a3). [source:swissprot;acc:q9ui42]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8475.56\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8786.06\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03663\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sodium/iodide cotransporter (na(+)/i(-) cotransporter) (sodium-iodide symporter) (na+/i-symporter). [source:swissprot;acc:q92911]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
6600.36\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7178.84\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08764\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1165\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
kidney and liver proline oxidase 1. [source:refseq;acc:nm\_021232]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6604.44\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7183.07\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08761\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
u2 small nuclear ribonucleoprotein auxiliary factor 35 kda subunit related-protein 1. [source:swissprot;acc:q15695]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
7907.87\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8197.14\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.03658\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1166\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
polypeptide n-acetylgalactosaminyltransferase 2; udp-galnac transferase 2. [source:refseq;acc:nm\_004481]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
7688.43\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7969.64\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
solute carrier family 5 (iodide transporter), member 8; apical iodide transporter. [source:refseq;acc:nm\_145913]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6606.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7185.01\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0876\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1167\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
similar to expressed sequence ai415388 (fragment). [source:sptrembl;acc:q8n428]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7688.43\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7969.64\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03658\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sodium-dependent multivitamin transporter (na(+)-dependent multivitamin transporter). [source:swissprot;acc:q9y289]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
6607.68\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7186.45\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08759\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1168\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
mitotic checkpoint protein bub3. [source:swissprot;acc:o43684]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
5470.44\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5949.49\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08757\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
splicing factor, arginine/serine-rich 3 (pre-mrna splicing factor srp20) (x16 protein). [source:swissprot;acc:p23152]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
7667.06\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7947.38\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.03656\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1169\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
nuclear fragile x mental retardation protein interacting protein 1; nuclear fragile x mental retardation intercating protein 1; nuclear fragile x mental retardation protein-interacting protein 1. [source:refseq;acc:nm\_012345]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
7900.36\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8189.22\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
zinc finger protein 207. [source:swissprot;acc:o43670]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5470.44\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5949.49\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08757\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1170\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
saccharomyces cerevisiae nip7p homolog. [source:refseq;acc:nm\_016101]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8354.87\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8660.21\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03655\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin-like protein smt3a. [source:swissprot;acc:p55854]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5826.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6335.98\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08747\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1171\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
twinkle; likely ortholog of mouse t7 gp4-like protein with intramitochondrial nucleoid localization. [source:refseq;acc:nm\_021830]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7602.97\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7880.63\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03652\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ubiquitin-like protein smt3b (sentrin 2) (hsmt3). [source:swissprot;acc:p55855]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
5826.29\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6335.93\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
1.08747\vspace{3pt}}}\\\cline{1-2}\cline{4-5}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1172\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
acrc protein; putative nuclear protein. [source:refseq;acc:nm\_052957]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
5826.32\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6335.95\vspace{3pt}}&\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
coatomer beta subunit (beta-coat protein) (beta-cop). [source:swissprot;acc:p53618]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8146.72\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8444.12\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03651\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1173\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
chaperone-activity of bc1 complex-like, mitochondrial precursor (chaperone-abc1-like). [source:swissprot;acc:q8ni60]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5799.35\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6305.95\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08735\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial ribosomal protein l23; l23 mitochondrial-related protein; ribosomal protein related to l23 (mitochondrial); ribosomal protein l23-like. [source:refseq;acc:nm\_021134]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8230.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8530.61\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0365\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1174\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
cda11 protein. [source:refseq;acc:nm\_032026]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5874.11\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6387.23\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08735\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleolin (protein c23). [source:swissprot;acc:p19338]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
10353.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9988.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03649\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1175\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
aarf domain containing kinase 2; putative ubiquinone biosynthesis protein aarf. [source:refseq;acc:nm\_052853]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5799.35\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6305.95\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08735\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
signal recognition particle 54 kda protein (srp54). [source:swissprot;acc:p13624]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8267.53\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8569.18\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03649\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1176\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
aarf domain containing kinase 4. [source:refseq;acc:nm\_024876]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5799.35\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6305.95\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08735\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial 39s ribosomal protein l39 (l39mt) (mrp-l39) (mrp-l5) (pred22 protein). [source:swissprot;acc:q9nyk5]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7562.94\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7838.78\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03647\vspace{3pt}}\\\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1177\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
aarf domain containing kinase 1. [source:refseq;acc:nm\_020421]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5799.35\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
6305.95\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08735\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
mitochondrial import receptor subunit tom22 homolog (translocase of outer membrane 22 kda subunit homolog) (htom22) (1c9-2). [source:swissprot;acc:q9ns69]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
7749.12\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8031.59\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03645\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
1178\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
epidermal growth factor receptor kinase substrate eps8. [source:swissprot;acc:q12929]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
7660.99\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7940.13\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03644\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
pepsin a precursor (ec 3.4.23.1). [source:swissprot;acc:p00790]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4392.63\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4776.19\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.08732\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
1179\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
epidermal growth factor receptor pathway substrate 8-like protein 1 isoform c; epidermal growth factor receptor pathway substrate 8-related protein 1; eps8-related protein 1. [source:refseq;acc:nm\_139204]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7660.66\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
7939.84\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.03644\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/