Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Value Type description Interaction Map Network Comparison Type Rank red Gene Filtered green network_comparison
Results: HTML CSV LaTeX Showing element 2575 to 2624 of 3228 in total 
Value Type: Measured
Interaction Map: High confidence
Network Comparison Type: Divided
Filtered: 1

\def\wcA{0.16666666666667\textwidth}
\def\wcB{0.16666666666667\textwidth}
\def\wcC{0.16666666666667\textwidth}
\def\wcD{0.16666666666667\textwidth}
\def\wcE{0.16666666666667\textwidth}
\begin{longtable}{|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
signal-induced proliferation-associated 1-like 1. [source:refseq;acc:nm\_015556]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1378\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6079.45\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6555.4\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07829\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
similar to actin-related protein 3-beta. [source:sptrembl;acc:q96bt2]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1780\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5386.37\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5744.89\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.06656\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
similar to cg5057 gene product. [source:sptrembl;acc:q9btt4]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2984\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
similar to cg7020 gene product (fragment). [source:sptrembl;acc:q96ib4]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2316\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6960.74\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7273.48\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04493\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
similar to ecotropic viral integration site 5; neuroblastoma stage 4s gene. [source:refseq;acc:nm\_145245]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1234\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5807.83\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6300.47\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08482\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
similar to expressed sequence aa415817. [source:sptrembl;acc:q8n4q9]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
590\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6739.85\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7644.63\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.13424\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
similar to expressed sequence ai415388 (fragment). [source:sptrembl;acc:q8n428]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2098\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6024.47\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6356.56\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05512\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
similar to glucosamine-phosphate n-acetyltransferase (hypothetical protein flj33258). [source:sptrembl;acc:q96ek6]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2066\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5882.61\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6213.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05622\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
similar to kinase suppressor of ras (fragment). [source:sptrembl;acc:q8ivt5]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1429\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5880.37\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6334.71\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07726\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
similar to lim domain only 7 (fragment). [source:sptrembl;acc:q8n6m2]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1042\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5887.52\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6434.32\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09287\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
similar to lysozyme c-1 (1,4-beta-n-acylmuramidase c, ec 3.2.1.17). [source:refseq;acc:nm\_032517]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
3032\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
similar to mob-lak. [source:refseq;acc:nm\_145279]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2937\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
similar to nuclear protein e3-3 orf1. [source:sptrembl;acc:q9bu61]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2710\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5603.24\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5583.64\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00351\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
similar to putative transmembrane protein; homolog of yeast golgi membrane protein yif1p (yip1p-interacting factor). [source:refseq;acc:nm\_033557]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1130\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5790.65\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6303.92\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08864\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
similar to ribosomal protein, large, p0. [source:sptrembl;acc:q96fq9]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2262\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5148.88\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5386.34\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04612\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
similar to trna synthetase class ii. [source:refseq;acc:nm\_152268]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1195\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5439.56\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5911.24\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08671\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
similar to zinc finger protein 277. [source:sptrembl;acc:q8wwa6]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1624\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4102.1\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4392.15\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.07071\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
sin3 associated polypeptide p18 (2hor0202). [source:swissprot;acc:o00422]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2518\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6204.15\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6360.27\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.02516\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
sin3 associated polypeptide p30; sin3-associated polypeptide, 30kd. [source:refseq;acc:nm\_003864]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2674\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
7780.98\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7741.14\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.00515\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
single-minded homolog 1. [source:swissprot;acc:p81133]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1008\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5707.73\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6249.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09485\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
sipl protein. [source:refseq;acc:nm\_018269]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
910\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6522.94\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7175.18\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09999\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
sirtuin 1; sir2-like 1; sirtuin type 1; sir2alpha; sirtuin silent mating type information regulation 2 homolog 1 (s. cerevisiae). [source:refseq;acc:nm\_012238]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2199\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6344.31\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6657.98\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04944\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
sirtuin 7; sir2-related protein type 7; sirtuin type 7; sirtuin (silent mating type information regulation 2, s.cerevisiae, homolog) 7; silent mating type information regulation 2, s.cerevisiae, homolog 7; sirtuin silent mating type information regulation 2 homolog 7 (s. cerevisiae). [source:refseq;acc:nm\_016538]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1244\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4835.55\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5243.23\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08431\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
skd1 protein (vacuolar sorting protein 4b). [source:swissprot;acc:o75351]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
3037\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
skeletal muscle and kidney enriched inositol phosphatase isoform 1; 43-kda form skeletal muscle and kidney enriched inositol phosphatase. [source:refseq;acc:nm\_016532]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2994\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
skeletal muscle lim-protein 2 (slim 2) (four and a half lim domains protein 3) (fhl-3). [source:swissprot;acc:q13643]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2443\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3634.59\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3756.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.03359\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
skeletal muscle lim-protein 3 (slim 3) (lim-domain protein dral) (four and a half lim domains protein 2) (fhl-2). [source:swissprot;acc:q14192]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2445\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3633.14\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3754.96\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.03353\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
skeletal muscle tropomodulin (sk-tmod) (tropomodulin 4). [source:swissprot;acc:q9nzq9]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1046\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4757.46\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5198.91\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09279\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
small edrk-rich factor 2. [source:refseq;acc:nm\_005770]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2947\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
small glutamine rich protein with tetratricopeptide repeats 2. [source:refseq;acc:nm\_019072]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
512\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
10807.4\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
12338.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.14167\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
small glutamine-rich tetratricopeptide repeat-containing protein (vpu-binding protein) (ubp). [source:swissprot;acc:o43765]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
565\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
10434.4\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
11846.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.1353\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
small gtp-binding tumor suppressor 1. [source:refseq;acc:nm\_145173]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
705\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6912.09\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7734.41\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.11897\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein associated protein n (snrnp-n) (sm protein n) (sm-n) (smn) (sm-d) (tissue-specific splicing protein). [source:swissprot;acc:p14648]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
3004\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein associated proteins b and b' (snrnp-b) (sm protein b/b') (sm-b/sm-b') (smb/smb'). [source:swissprot;acc:p14678]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
3012\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein e (snrnp-e) (sm protein e) (sm-e) (sme). [source:swissprot;acc:p08578]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
204\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
4512.19\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
5655.52\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.25339\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein f (snrnp-f) (sm protein f) (sm-f) (smf). [source:swissprot;acc:q15356]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
205\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein sm d1 (snrnp core protein d1) (sm-d1) (sm-d autoantigen). [source:swissprot;acc:p13641]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
82\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4172.91\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5954.48\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.42694\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein sm d2 (snrnp core protein d2) (sm-d2). [source:swissprot;acc:p43330]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
141\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4405.4\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5782.08\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.3125\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
small nuclear ribonucleoprotein sm d3 (snrnp core protein d3) (sm-d3). [source:swissprot;acc:p43331]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
187\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
4569.48\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5885.79\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.28807\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
small optic lobes homolog; small optic lobes, drosophila, homolog of. [source:refseq;acc:nm\_005632]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2172\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5825.61\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6126.74\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.05169\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
smooth muscle cell lim protein (cysteine-rich protein 2) (crp2) (lim-only protein 5). [source:swissprot;acc:q16527]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2378\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
3977.76\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
3818.09\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.04182\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
snare associated protein snapin. [source:refseq;acc:nm\_012437]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1198\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5721.19\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6217.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0867\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
snrna activating protein complex 50 kda subunit (snapc 50 kda subunit) (proximal sequence element-binding transcription factor beta subunit) (pse-binding factor beta subunit) (ptf beta subunit). [source:swissprot;acc:q92966]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2849\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
sodium-dependent multivitamin transporter (na(+)-dependent multivitamin transporter). [source:swissprot;acc:q9y289]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1167\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6607.68\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7186.45\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08759\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
sodium/iodide cotransporter (na(+)/i(-) cotransporter) (sodium-iodide symporter) (na+/i-symporter). [source:swissprot;acc:q92911]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1164\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6600.36\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7178.84\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.08764\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
sodium/potassium-transporting atpase alpha-1 chain precursor (ec 3.6.3.9) (sodium pump 1) (na+/k+ atpase 1). [source:swissprot;acc:p05023]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2236\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
5902.27\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
6181.21\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
1.04726\vspace{3pt}}}\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
sodium/potassium-transporting atpase alpha-2 chain precursor (ec 3.6.3.9) (sodium pump 2) (na+/k+ atpase 2). [source:swissprot;acc:p50993]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2240\vspace{3pt}}&&&\\\cline{1-2}
\parbox{\wcA}{\vspace{3pt}\noindent
sodium/potassium-transporting atpase alpha-3 chain (ec 3.6.3.9) (sodium pump 3) (na+/k+ atpase 3) (alpha(iii)). [source:swissprot;acc:p13637]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
2239\vspace{3pt}}&&&\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
soluble liver antigen/liver pancreas antigen. [source:refseq;acc:nm\_153825]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1475\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
5910.06\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6355.08\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.0753\vspace{3pt}}\\\hline
\parbox{\wcA}{\vspace{3pt}\noindent
solute carrier family 13, member 1 (renal sodium/sulfate cotransporter) (na(+)/sulfate cotransporter) (hnasi-1). [source:swissprot;acc:q9bzw2]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
1078\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
6439.63\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7032.19\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
1.09202\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/