Scientific

MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2551 to 2600 of 12912 in total 
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1

\def\wcA{0.14285714285714\textwidth}
\def\wcB{0.14285714285714\textwidth}
\def\wcC{0.14285714285714\textwidth}
\def\wcD{0.14285714285714\textwidth}
\def\wcE{0.14285714285714\textwidth}
\def\wcF{0.14285714285714\textwidth}
\begin{longtable}{|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
638\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
sorting nexin 17. [source:swissprot;acc:q15036]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
228.639\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
242.258\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05957\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
transcription factor hes-1 (hairy and enhancer of split 1) (hairy- like) (hhl) (hairy homolog). [source:swissprot;acc:q14469]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.0129\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64.7371\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07872\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
639\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
bag-family molecular chaperone regulator-3 (bcl-2 binding athanogene- 3) (bag-3) (bcl-2-binding protein bis) (docking protein cair-1). [source:swissprot;acc:o95817]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
17618.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
20776.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.17924\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
delta3,5-delta2,4-dienoyl-coa isomerase, mitochondrial precursor (ec 5.3.3.-). [source:swissprot;acc:q13011]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.0129\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64.7371\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07872\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleoporin-like protein rip (hiv-1 rev-binding protein) (rev interacting protein) (rev/rex activation domain-binding protein). [source:swissprot;acc:p52594]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
230.596\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05938\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nucleoside diphosphate kinase b (ec 2.7.4.6) (ndk b) (ndp kinase b) (nm23-h2) (c-myc purine-binding transcription factor puf). [source:swissprot;acc:p22392]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
7753.59\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
8728.13\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12569\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
640\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
actin-binding lim protein 1 isoform a; lim actin-binding protein 1; limatin; actin-binding lim protein. [source:refseq;acc:nm\_002313]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.0129\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64.7371\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07872\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
glutathione s-transferase theta 2 (ec 2.5.1.18) (gst class-theta). [source:swissprot;acc:p30712]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4811.02\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5414.64\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12547\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
intersectin 1 (sh3 domain-containing protein 1a) (sh3p17). [source:swissprot;acc:q15811]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
230.596\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05938\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nicotinate-nucleotide pyrophosphorylase [carboxylating] (ec 2.4.2.19) (quinolinate phosphoribosyltransferase [decarboxylating]) (qaprtase) (qprtase). [source:swissprot;acc:q15274]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
22848.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26941.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.17914\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
641\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
peroxisomal n1-acetyl-spermine/spermidine oxidase. [source:refseq;acc:nm\_152911]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4810.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5414.21\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12542\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
pram-1 protein; pml-rara target gene encoding an adaptor molecule-1. [source:refseq;acc:nm\_032152]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
230.596\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05938\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
synapsin i (brain protein 4.1). [source:swissprot;acc:p17600]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
60.0129\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
64.7371\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07872\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
u6 snrna-associated sm-like protein lsm7. [source:swissprot;acc:q9uk45]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
18364.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
21653.8\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.17909\vspace{3pt}}\\\cline{1-2}\cline{4-6}
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
642\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
6-phosphofructokinase, liver type (ec 2.7.1.11) (phosphofructokinase 1) (phosphohexokinase) (phosphofructo-1-kinase isozyme b) (pfk-b). [source:swissprot;acc:p17858]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
16123.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
19009.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.17898\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
atpase inhibitor, mitochondrial precursor. [source:swissprot;acc:q9uii2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4810.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5414.23\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12542\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
intersectin 2 (sh3 domain-containing protein 1b) (sh3p18) (sh3p18-like wasp associated protein). [source:swissprot;acc:q9nzm3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
230.596\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05938\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
ponsin; sh3-domain protein 5 (ponsin). [source:refseq;acc:nm\_015385]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
64.4857\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
69.5606\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.0787\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
643\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
6-phosphofructokinase, muscle type (ec 2.7.1.11) (phosphofructokinase 1) (phosphohexokinase) (phosphofructo-1-kinase isozyme a) (pfk-a) (phosphofructokinase-m). [source:swissprot;acc:p08237]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
16126.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
19012.6\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.17897\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
autophagy protein 12-like (apg12-like). [source:swissprot;acc:o94817]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
87.4586\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
81.0798\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07867\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
hiv-1 rev binding protein-like; rev/rex activation domain binding protein-related. [source:refseq;acc:nm\_006076]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
230.596\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05938\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
polyamine oxidase isoform 1; polyamine oxidase; flavin-containing spermine oxidase; putative cyclin g1 interacting protein; flavin containing amine oxidase. [source:refseq;acc:nm\_019025]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4810.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5414.23\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12542\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
644\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
6-phosphofructokinase, type c (ec 2.7.1.11) (phosphofructokinase 1) (phosphohexokinase) (phosphofructo-1-kinase isozyme c) (pfk-c) (6-phosphofructokinase, platelet type). [source:swissprot;acc:q01813]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
16156.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
19046\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.17886\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cgthba protein (-14 gene protein). [source:swissprot;acc:q12980]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
230.596\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05938\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cytochrome c-type heme lyase (ec 4.4.1.17) (cchl) (holocytochrome c- type synthase). [source:swissprot;acc:p53701]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4810.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5414.22\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12542\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
rna polymerase i associated factor 53. [source:refseq;acc:nm\_022490]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
51.1896\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
47.4617\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07855\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
645\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
glutathione s-transferase theta 1 (ec 2.5.1.18) (gst class-theta) (glutathione transferase t1-1). [source:swissprot;acc:p30711]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4810.71\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5413.89\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12538\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
hiv tat specific factor 1; cofactor required for tat activation of hiv-1 transcription. [source:refseq;acc:nm\_014500]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
217.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
230.596\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05938\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
nif3-like protein 1 (amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 1) (my018 protein) (mds015). [source:swissprot;acc:q9gzt8]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
22722.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
26786.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.17885\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
preimplantation protein 3; likely ortholog of preimplantation protein 3. [source:refseq;acc:nm\_015387]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
63.1463\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
68.1044\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07852\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
646\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
3-hydroxyisobutyryl-coenzyme a hydrolase. [source:refseq;acc:nm\_014362]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
27898\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
32866.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.17808\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dnaj homolog subfamily b member 11 precursor (er-associated dnaj protein 3) (erj3) (er-associated hsp40 co-chaperone) (hdj9) (pwp1- interacting protein 4). [source:swissprot;acc:q9ubs4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
63.1463\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
68.1044\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07852\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
fibrillarin (34 kda nucleolar scleroderma antigen). [source:swissprot;acc:p22087]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
4019.88\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4522.61\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12506\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
short coiled-coil protein; short coiled coil protein. [source:refseq;acc:nm\_032547]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.731\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
229.549\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05914\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
647\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
calcium-dependent protease, small subunit (calpain regulatory subunit) (calcium-activated neutral proteinase) (canp). [source:swissprot;acc:p04632]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
64.5657\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
69.6237\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07834\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
cathepsin b precursor (ec 3.4.22.1) (cathepsin b1) (app secretase). [source:swissprot;acc:p07858]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
33384.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
39324.9\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.17795\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
dynein light chain 2. [source:refseq;acc:nm\_080677]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
216.731\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
229.549\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05914\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
short transient receptor potential channel 4 (trpc4) (trp-related protein 4) (htrp-4) (htrp4). [source:swissprot;acc:q9ubn4]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5167.88\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
4594.43\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12481\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
648\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
methionyl-trna synthetase (ec 6.1.1.10) (methionine--trna ligase) (metrs). [source:swissprot;acc:p56192]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
218.227\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
206.078\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05895\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
retinoblastoma-like protein 1 (107 kda retinoblastoma-associated protein) (prb1) (p107). [source:swissprot;acc:p28749]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
29174\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
34363.5\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.17788\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
splicing factor 3a subunit 3 (spliceosome associated protein 61) (sap 61) (sf3a60). [source:swissprot;acc:q12874]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5248.07\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5901.72\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12455\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
swi/snf-related, matrix-associated, actin-dependent regulator of chromatin subfamily f member 1 (swi-snf complex protein p270) (b120). [source:swissprot;acc:o14497]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
64.5685\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
69.6269\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07834\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
649\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 4e (eif-4e) (eif4e) (mrna cap-binding protein) (eif-4f 25 kda subunit). [source:swissprot;acc:p06730]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
233.725\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
220.751\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05877\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
grancalcin. [source:swissprot;acc:p28676]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
64.5659\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
69.624\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07834\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
retinoblastoma-like protein 2 (130 kda retinoblastoma-associated protein) (prb2) (p130) (rbr-2). [source:swissprot;acc:q08999]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
29173.8\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
34362.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.17786\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
splicing factor 3 subunit 1 (spliceosome associated protein 114) (sap 114) (sf3a120). [source:swissprot;acc:q15459]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
5248.07\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
5901.72\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12455\vspace{3pt}}\\\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
650\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
chromodomain y-like protein 2. [source:refseq;acc:nm\_152342]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
29016.1\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
34169.2\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.17759\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
golgi reassembly stacking protein 2; golgi reassembly stacking protein 2, 55 kda. [source:refseq;acc:nm\_015530]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
8362.81\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
9402.7\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.12435\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
sorcin (22 kda protein) (cp-22) (v19). [source:swissprot;acc:p30626]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
64.566\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
69.6241\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.07834\vspace{3pt}}\\\cline{2-6}
&\parbox{\wcB}{\vspace{3pt}\noindent
u6 snrna-associated sm-like protein lsm7. [source:swissprot;acc:q9uk45]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
228.986\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
216.276\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
1.05877\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/