Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
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Rank Gene Hugo description Network Comparison Type Value Type Interaction Map Filtered red network_comparison green
Results: HTML CSV LaTeX
Showing element 2501 to 2550 of 33156 in total
Network Comparison Type: Divided
Filtered: 1

\def\wcA{0.11111111111111\textwidth}
\def\wcB{0.11111111111111\textwidth}
\def\wcC{0.11111111111111\textwidth}
\def\wcD{0.11111111111111\textwidth}
\def\wcE{0.11111111111111\textwidth}
\def\wcF{0.11111111111111\textwidth}
\def\wcG{0.11111111111111\textwidth}
\def\wcH{0.11111111111111\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
green\vspace{3pt}}\\
\hline
\hline
\multirow{4}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
313\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
HTRA3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
probable serine protease htra3 precursor (ec 3.4.21.-). [source:swissprot;acc:p83110]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
72.0261\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05305\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
75.8469\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MYH2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
myosin heavy chain, skeletal muscle, adult 2 (myosin heavy chain iia) (myhc-iia). [source:swissprot;acc:q9ukx2]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PPP1R2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein phosphatase inhibitor 2 (ipp-2). [source:swissprot;acc:p41236]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
21644.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.1959\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
18098.7\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
RRM2B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ribonucleotide reductase m2 b (tp53 inducible); p53-inducible ribonucleotide reductase small subunit 2 homolog. [source:refseq;acc:nm\_015713]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
232.473\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10069\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
211.207\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
314\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ASS1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
argininosuccinate synthase (ec 6.3.4.5) (citrulline--aspartate ligase). [source:swissprot;acc:p00966]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
9057.22\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05777\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
9580.45\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
FZR1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
fzr1 protein; fizzy-related protein; cdc20-like 1b. [source:refseq;acc:nm\_016263]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
71576.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.27074\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
56326.7\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
HTRA4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
probable serine protease htra4 precursor (ec 3.4.21.-). [source:swissprot;acc:p83105]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
72.0269\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05304\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
75.8474\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
METAP1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
methionine aminopeptidase 1 (ec 3.4.11.18) (metap 1) (map 1) (peptidase m 1). [source:swissprot;acc:p53582]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
244.126\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10027\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
268.604\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MYH3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
myosin heavy chain, fast skeletal muscle, embryonic (muscle embryonic myosin heavy chain) (smhce). [source:swissprot;acc:p11055]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PPP1R2P9\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
type 1 protein phosphatase inhibitor. [source:refseq;acc:nm\_025210]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
21632.5\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.19583\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
18090\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
RALGPS2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ral-a exchange factor ralgps2. [source:refseq;acc:nm\_152663]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
52309.6\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.08151\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
48367\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SF3B1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
splicing factor 3b subunit 1 (spliceosome associated protein 155) (sap 155) (sf3b155) (pre-mrna splicing factor sf3b 155 kda subunit). [source:swissprot;acc:o75533]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
202.057\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.04179\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
193.952\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
315\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
DPM1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dolichol-phosphate mannosyltransferase (ec 2.4.1.83) (dolichol- phosphate mannose synthase) (dolichyl-phosphate beta-d- mannosyltransferase) (mannose-p-dolichol synthase) (mpd synthase) (dpm synthase). [source:swissprot;acc:o60762]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
49517.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.08075\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
45817.4\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
HTRA2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
serine protease htra2, mitochondrial precursor (ec 3.4.21.-) (high temperature requirement protein a2) (htra2) (omi stress-regulated endoprotease) (serine proteinase omi). [source:swissprot;acc:o43464]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
72.0303\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05302\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
75.8494\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
METAP2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
methionine aminopeptidase 2 (ec 3.4.11.18) (metap 2) (peptidase m 2) (initiation factor 2 associated 67 kda glycoprotein) (p67) (p67eif2). [source:swissprot;acc:p50579]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
244.126\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10027\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
268.604\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MYH1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
myosin heavy chain, skeletal muscle, adult 1 (myosin heavy chain iix/d) (myhc-iix/d). [source:swissprot;acc:p12882]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PCSK5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
proprotein convertase subtilisin/kexin type 5 precursor (ec 3.4.21.-) (proprotein convertase pc5) (subtilisin/kexin-like protease pc5) (convertase pc5) (pc6) (hpc6). [source:swissprot;acc:q92824]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
71576.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.27074\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
56326.7\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
RRS1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ribosome biogenesis regulatory protein homolog. [source:swissprot;acc:q15050]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
21370.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.19413\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
17896.5\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
TFIP11\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tuftelin-interacting protein 11 (hspc006). [source:swissprot;acc:q9ubb9]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
7696.96\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05777\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
8141.6\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
TNKS\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
tankyrase 1 (ec 2.4.2.30) (tank1) (tankyrase i) (tnks-1) (trf1- interacting ankyrin-related adp-ribose polymerase). [source:swissprot;acc:o95271]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
214.067\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.04164\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
205.509\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
316\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
myosin heavy chain, cardiac muscle beta isoform (myhc-beta). [source:swissprot;acc:p12883]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
EIF1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
protein translation factor sui1 homolog (sui1iso1). [source:swissprot;acc:p41567]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
242.694\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.10022\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
267.017\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
KCNA2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
potassium voltage-gated channel subfamily a member 2 (potassium channel kv1.2) (rbk2) (hbk5) (ngk1) (mk2) (hukiv). [source:swissprot;acc:p16389]\vspace{3pt}}&&\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
209.583\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0414\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
201.251\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PPP1CA\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
serine/threonine protein phosphatase pp1-alpha 1 catalytic subunit (ec 3.1.3.16) (pp-1a). [source:swissprot;acc:p08129]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
21370.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.19413\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
17896.5\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PPP2R5A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
serine/threonine protein phosphatase 2a, 56 kda regulatory subunit, alpha isoform (pp2a, b subunit, b' alpha isoform) (pp2a, b subunit, b56 alpha isoform) (pp2a, b subunit, pr61 alpha isoform) (pp2a, b subunit, r5 alpha isoform). [source:swissprot;acc:q15172]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
70.1674\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05277\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
73.8703\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
RALGPS1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
ral guanine nucleotide exchange factor ralgps1a. [source:refseq;acc:nm\_014636]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
52058.2\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.08048\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
48180.7\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
TXNL4A\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
spliceosomal u5 snrnp-specific 15 kda protein (dim1 protein homolog) (thioredoxin-like u5 snrnp protein u5-15kd). [source:swissprot;acc:o14834]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
7712.29\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05776\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
8157.72\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
WASL\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
neural wiskott-aldrich syndrome protein (n-wasp). [source:swissprot;acc:o00401]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
28918.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.27068\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
36746\vspace{3pt}}\\\cline{1-4}\cline{6-8}
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
317\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
splicing factor 3b subunit 3 (spliceosome associated protein 130) (sap 130) (sf3b130) (pre-mrna splicing factor sf3b 130 kda subunit). [source:swissprot;acc:q15393]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
224.445\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09998\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
204.044\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
ADIPOR2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
adiponectin receptor 2. [source:refseq;acc:nm\_024551]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
3153.1\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.19329\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
3762.56\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
DYNC1I1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dynein intermediate chain 1, cytosolic (dh ic-1) (cytoplasmic dynein intermediate chain 1). [source:swissprot;acc:o14576]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
67.1787\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05275\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
70.7226\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
KCNA1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
potassium voltage-gated channel subfamily a member 1 (potassium channel kv1.1) (huki) (hbk1). [source:swissprot;acc:q09470]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
209.58\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.04139\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
201.251\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MYH7B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
dj756n5.1.1 (continues in em:al133324 as dj1161h23.3) (fragment). [source:sptrembl;acc:q9h430]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
NME3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nucleoside diphosphate kinase 3 (ec 2.7.4.6) (ndk 3) (ndp kinase 3) (nm23-h3) (dr-nm23). [source:swissprot;acc:q13232]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
33982.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.27005\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
43159.1\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PHF12\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
phd finger protein 12; phd zinc finger transcription factor. [source:refseq;acc:nm\_020889]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
10745.7\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05765\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
10160\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
SF3B5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
splicing factor 3b subunit 10 (sf3b10) (pre-mrna splicing factor sf3b 10 kda subunit). [source:swissprot;acc:q9bwj5]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
48517.8\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.08031\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
44911.1\vspace{3pt}}\\\hline
\multirow{8}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
318\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
nuclear dna-binding protein; small unique nuclear receptor corepressor; c1d dna-binding protein. [source:refseq;acc:nm\_006333]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
34190.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.19318\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
40795.8\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
EIF2S1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
eukaryotic translation initiation factor 2 subunit 1 (eukaryotic translation initiation factor 2 alpha subunit) (eif-2-alpha) (eif- 2alpha) (eif-2a). [source:swissprot;acc:p05198]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
50261.3\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.08028\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
46526.2\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
GFER\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
augmenter of liver regeneration (herv1 protein). [source:swissprot;acc:p55789]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
9057.26\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05752\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
9578.24\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
KCNA4\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
potassium voltage-gated channel subfamily a member 4 (potassium channel kv1.4) (hk1) (hpcn2) (hbk4) (hukii). [source:swissprot;acc:p22459]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
209.579\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.04138\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
201.251\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
LUC7L2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
luc7-like 2; cgi-74 protein; cgi-59 protein. [source:refseq;acc:nm\_016019]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
71.0794\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05262\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
74.8193\vspace{3pt}}\\\cline{2-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MRPL3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mitochondrial 60s ribosomal protein l3 (l3mt). [source:swissprot;acc:p09001]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
242.011\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09987\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
266.18\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
MYH13\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
myosin heavy chain, skeletal muscle, extraocular (myhc-eo). [source:swissprot;acc:q9ukx3]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
95.0526\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.11406\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
85.3206\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
TOMM20\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
mitochondrial import receptor subunit tom20 homolog (mitochondrial 20 kda outer membrane protein) (outer mitochondrial membrane receptor tom20). [source:swissprot;acc:q15388]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
46739.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.26518\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
59134.5\vspace{3pt}}\\\hline
\multirow{6}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
319\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
EPN1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
epsin 1; eh domain-binding mitotic phosphoprotein. [source:refseq;acc:nm\_013333]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
8527.78\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.05752\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
9018.27\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
HSPB2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
heat-shock protein, beta-2 (hspb2) (dmpk-binding protein) (mkbp). [source:swissprot;acc:q16082]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
212.752\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.04123\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
204.328\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
LUC7L\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
luc7-like; sarcoplasmic reticulum protein luc7b1. [source:refseq;acc:nm\_018032]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&\parbox{\wcF}{\vspace{3pt}\noindent
71.0638\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.0526\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
74.8018\vspace{3pt}}\\\cline{2-3}\cline{5-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
NIP7\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
saccharomyces cerevisiae nip7p homolog. [source:refseq;acc:nm\_016101]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
49.0663\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.1107\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
54.4978\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
PEX19\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
peroxisomal farnesylated protein (33 kda housekeeping protein) (peroxin 19). [source:swissprot;acc:p40855]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
46739.9\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.26518\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
59134.5\vspace{3pt}}\\\cline{2-4}\cline{6-8}
&\parbox{\wcB}{\vspace{3pt}\noindent
RPL19\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
60s ribosomal protein l19. [source:swissprot;acc:p14118]\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
240.73\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
1.09969\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
264.729\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/