Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2408 to 2457 of 3228 in total
Value Type: Measured
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1
\def\wcA{0.16666666666667\textwidth} \def\wcB{0.16666666666667\textwidth} \def\wcC{0.16666666666667\textwidth} \def\wcD{0.16666666666667\textwidth} \def\wcE{0.16666666666667\textwidth} \begin{longtable}{|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent 2408\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent serpin b11. [source:swissprot;acc:q96p15]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5078.5\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5275.76\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.03884\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2409\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent placental thrombin inhibitor (cytoplasmic antiproteinase) (cap) (protease inhibitor 6) (pi-6). [source:swissprot;acc:p35237]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2410\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent cytoplasmic antiproteinase 2 (cap2) (cap-2) (protease inhibitor 8) (serpin b8). [source:swissprot;acc:p50452]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2411\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent leukocyte elastase inhibitor (lei) (monocyte/neutrophil elastase inhibitor) (m/nei) (ei). [source:swissprot;acc:p30740]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2412\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dynactin 4. [source:refseq;acc:nm\_032486]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4644.04\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4470.47\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03883\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2413\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent cytoplasmic cysteine conjugate-beta lyase; glutamine-phenylpyruvate aminotransferase. [source:refseq;acc:nm\_004059]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6956.32\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 7223.14\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.03836\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2414\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent alanine aminotransferase 2; glutamic-pyruvate transaminase 2. [source:refseq;acc:nm\_133443]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2415\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent alanine aminotransferase (ec 2.6.1.2) (glutamic--pyruvic transaminase) (gpt) (glutamic--alanine transaminase). [source:swissprot;acc:p24298]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6956.62\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7223.09\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0383\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2416\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dr1-associated protein 1; negative cofactor 2 alpha; dr1-associated corepressor. [source:refseq;acc:nm\_006442]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 8048.38\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7752.09\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03822\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2417\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l11, mitochondrial precursor (l11mt) (cgi-113). [source:swissprot;acc:q9y3b7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3598.55\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3467.65\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03775\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2418\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s acidic ribosomal protein p1. [source:swissprot;acc:p05386]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 4857.03\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 5039.78\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.03763\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2419\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent thioredoxin domain-containing 2; sperm-specific thioredoxin; thioredoxin domain-containing 2 (spermatozoa). [source:refseq;acc:nm\_032243]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2420\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent thioredoxin (atl-derived factor) (adf) (surface associated sulphydryl protein) (sasp). [source:swissprot;acc:p10599]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2421\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent c439a6.1 (novel protein similar to heparan sulfate (glucosamine) 3-o- sulfotransferases) (fragment). [source:sptrembl;acc:q96qi5]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 7355.46\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 7088.93\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.0376\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2422\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent heparan sulfate d-glucosaminyl 3-o-sulfotransferase 3a1; heparin-glucosamine 3-o-sulfotransferase. [source:refseq;acc:nm\_006042]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2423\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent heparan sulfate d-glucosaminyl 3-o-sulfotransferase 3b1. [source:refseq;acc:nm\_006041]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2424\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent heparan sulfate d-glucosaminyl 3-o-sulfotransferase 2; heparin-glucosamine 3-o-sulfotransferase. [source:refseq;acc:nm\_006043]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2425\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent mrna decapping enzyme; histidine triad protein member 5; heat shock-like protein 1. [source:refseq;acc:nm\_014026]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2426\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent tata-binding protein-associated phosphoprotein (down-regulator of transcription 1) (dr1 protein). [source:swissprot;acc:q01658]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6123.47\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6351.84\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03729\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2427\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial 28s ribosomal protein s2 (mrp-s2) (cgi-91). [source:swissprot;acc:q9y399]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5333.6\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5531.41\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03709\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2428\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent fragile x mental retardation syndrome related protein 2. [source:swissprot;acc:p51116]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 7243.19\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 7509.81\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.03681\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2429\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent fragile x mental retardation syndrome related protein 1. [source:swissprot;acc:p51114]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2430\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent nucleoporin nup43 (p42). [source:swissprot;acc:q8nfh3]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7243.07\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7509.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0368\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2431\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent fragile x mental retardation 1 protein (protein fmr-1) (fmrp). [source:swissprot;acc:q06787]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7242.75\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7508.98\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03676\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2432\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent gcn5-like protein 1 (rt14 protein). [source:swissprot;acc:p78537]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 8154.48\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 8453.84\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03671\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2433\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent mitochondrial 60s ribosomal protein l27 (l27mt) (hspc250). [source:swissprot;acc:q9p0m9]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4585.86\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4753.26\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0365\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2434\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent wd repeat domain 26. [source:refseq;acc:nm\_025160]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6423.46\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6655.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03619\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2435\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent activator of camp-responsive element modulator (crem) in testis; lim protein act. [source:refseq;acc:nm\_020482]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3669.33\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3797.78\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03501\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2436\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 40s ribosomal protein s14 (pro2640). [source:swissprot;acc:p06366]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 3708.67\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 3584.47\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.03465\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2437\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 40s ribosomal protein s18 (ke-3) (ke3). [source:swissprot;acc:p25232]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2438\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent rna, u transporter 1; snurportin-1. [source:refseq;acc:nm\_005701]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7139.06\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7384.85\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03443\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2439\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent putative eukaryotic translation initiation factor 1a (eif-1a) (eif- 4c). [source:swissprot;acc:o75642]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3754.39\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3629.51\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03441\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2440\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent u3 snornp protein 4 homolog. [source:refseq;acc:nm\_033416]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4730.66\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4891.26\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03395\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2441\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adapter-related protein complex 3 mu 2 subunit (clathrin coat assembly protein ap47 homolog 2) (clathrin coat associated protein ap47 homolog 2) (golgi adaptor ap-1 47 kda protein homolog 2) (ha1 47 kda subunit homolog 2) (clathrin assembly protein assembly protein complex 1 medium chain homolog 2) (p47b). [source:swissprot;acc:p53677]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6477.82\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6695.58\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03362\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2442\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent breast cancer type 1 susceptibility protein. [source:swissprot;acc:p38398]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5454.62\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5637.88\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0336\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2443\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent skeletal muscle lim-protein 2 (slim 2) (four and a half lim domains protein 3) (fhl-3). [source:swissprot;acc:q13643]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3634.59\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3756.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03359\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2444\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent adapter-related protein complex 3 mu 1 subunit (mu-adaptin 3a) (ap-3 adapter complex mu3a subunit). [source:swissprot;acc:q9y2t2]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6478.14\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6695.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03358\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2445\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent skeletal muscle lim-protein 3 (slim 3) (lim-domain protein dral) (four and a half lim domains protein 2) (fhl-2). [source:swissprot;acc:q14192]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3633.14\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3754.96\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03353\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2446\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dna-directed rna polymerase ii 16 kda polypeptide (ec 2.7.7.6) (rpb4). [source:swissprot;acc:o15514]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4031.94\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4166.99\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0335\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2447\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l13, mitochondrial (l13mt). [source:swissprot;acc:q9byd1]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 3730.53\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 3611.05\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.03309\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2448\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 40s ribosomal protein s16. [source:swissprot;acc:p17008]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2449\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 60s ribosomal protein l13a (23 kda highly basic protein). [source:swissprot;acc:p40429]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3730.74\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3611.45\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03303\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2450\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent pyruvate dehydrogenase e1 component beta subunit, mitochondrial precursor (ec 1.2.4.1) (pdhe1-b). [source:swissprot;acc:p11177]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6737.15\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6957.34\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.03268\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2451\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor (ec 1.2.4.4) (branched-chain alpha-keto acid dehydrogenase e1 component alpha chain) (bckdh e1-alpha). [source:swissprot;acc:p12694]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2452\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial precursor (ec 1.3.5.1) (fp) (flavoprotein subunit of complex ii). [source:swissprot;acc:p31040]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6042.36\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6237.19\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03224\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2453\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent conserved oligomeric golgi complex component 6. [source:swissprot;acc:q9y2v7]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6931.15\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 7152.73\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03197\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2454\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent homeobox protein prh (hematopoietically expressed homeobox) (homeobox protein hex). [source:swissprot;acc:q03014]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 8751.01\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 8480.03\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03196\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2455\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent prip-interacting protein pipmt; prip-interacting protein with methyltransferase domain. [source:refseq;acc:nm\_024831]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 5978.83\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6166.89\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.03145\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2456\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent pdz/coiled-coil domain binding partner for the rho-family gtpase tc10; fused in glioblastoma; golgi associated pdz and coiled-coil motif containing protein; cftr-associated ligand. [source:refseq;acc:nm\_020399]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2457\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent yme1-like 1 isoform 3; atp-dependent metalloprotease ftsh1 homolog. [source:refseq;acc:nm\_014263]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4998.72\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5155.87\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.03144\vspace{3pt}}\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/