Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Rank Gene description Value Type Network Comparison Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX Showing element 2408 to 2457 of 3228 in total
Value Type: Ranked
Network Comparison Type: Divided
Interaction Map: High confidence
Filtered: 1
\def\wcA{0.16666666666667\textwidth} \def\wcB{0.16666666666667\textwidth} \def\wcC{0.16666666666667\textwidth} \def\wcD{0.16666666666667\textwidth} \def\wcE{0.16666666666667\textwidth} \begin{longtable}{|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent 2408\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent dj570f3.6 (novel protein similar to lysophospholipase ii (lypla2)). [source:sptrembl;acc:q9uge0]\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 194.407\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 193.706\vspace{3pt}}}&\multirow{5}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.00362\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2409\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent lactoylglutathione lyase (ec 4.4.1.5) (methylglyoxalase) (aldoketomutase) (glyoxalase i) (glx i) (ketone-aldehyde mutase) (s-d-lactoylglutathione methylglyoxal lyase). [source:swissprot;acc:q04760]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2410\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent lysophospholipase i; lysophospholipase 1; lysophospholipid-specific lysophospholipase; acyl-protein thioesterase-1. [source:refseq;acc:nm\_006330]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2411\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent mawd binding protein (unknown protein 32 from 2d-page of liver tissue). [source:swissprot;acc:p30039]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2412\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent lysophospholipase ii; acyl-protein thioesterase. [source:refseq;acc:nm\_007260]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2413\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent serpin b12. [source:swissprot;acc:q96p63]\vspace{3pt}}&\multirow{8}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 218.2\vspace{3pt}}}&\multirow{8}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 218.984\vspace{3pt}}}&\multirow{10}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.00359\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2414\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent megsin (tp55) (serpin b7). [source:swissprot;acc:o75635]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2415\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent hurpin (hacat uv-repressible serpin) (protease inhibitor 13) (headpin) (serpin b13). [source:swissprot;acc:q9uiv8]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2416\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent oxysterols receptor lxr-beta (liver x receptor beta) (nuclear orphan receptor lxr-beta) (ubiquitously-expressed nuclear receptor) (nuclear receptor ner). [source:swissprot;acc:p55055]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2417\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent upf0183 protein. [source:swissprot;acc:q9bsu1]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2418\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent antithrombin-iii precursor (atiii) (pro0309). [source:swissprot;acc:p01008]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2419\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent translation initiation factor eif-2b alpha subunit (eif-2b gdp-gtp exchange factor). [source:swissprot;acc:q14232]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2420\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent squamous cell carcinoma antigen 1 (scca-1) (protein t4-a). [source:swissprot;acc:p29508]\vspace{3pt}}&&&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2421\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent apoptosis-inducing factor (aif)-homologous mitochondrion-associated inducer of death; p53-responsive gene 3. [source:refseq;acc:nm\_032797]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 210.205\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 209.454\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2422\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent oxysterols receptor lxr-alpha (liver x receptor alpha) (nuclear orphan receptor lxr-alpha). [source:swissprot;acc:q13133]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 218.2\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 218.984\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2423\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent histone deacetylase 5 (hd5) (antigen ny-co-9). [source:swissprot;acc:q9uql6]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 220.682\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent 221.471\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.00358\vspace{3pt}}}\\\cline{1-2}\cline{4-4} \parbox{\wcA}{\vspace{3pt}\noindent 2424\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent histone deacetylase 4 (hd4). [source:swissprot;acc:p56524]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 221.472\vspace{3pt}}}&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2425\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent histone deacetylase 9 (hd9) (hd7b) (hd7). [source:swissprot;acc:q9ukv0]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2426\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent mesoderm induction early response 1. [source:refseq;acc:nm\_020948]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 212.374\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 211.618\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.00357\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2427\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent proteasome subunit alpha type 3 (ec 3.4.25.1) (proteasome component c8) (macropain subunit c8) (multicatalytic endopeptidase complex subunit c8). [source:swissprot;acc:p25788]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2428\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent alcohol dehydrogenase class iii chi chain (ec 1.1.1.1) (glutathione- dependent formaldehyde dehydrogenase) (ec 1.2.1.1) (fdh). [source:swissprot;acc:p11766]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 192.871\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 193.555\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.00355\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2429\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent esterase d (ec 3.1.1.1). [source:swissprot;acc:p10768]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2430\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent epsin 1; eh domain-binding mitotic phosphoprotein. [source:refseq;acc:nm\_013333]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 217.873\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 218.644\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.00354\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2431\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent proteasome subunit alpha type 2 (ec 3.4.25.1) (proteasome component c3) (macropain subunit c3) (multicatalytic endopeptidase complex subunit c3). [source:swissprot;acc:p25787]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 213.048\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 212.3\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.00352\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2432\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 26s proteasome non-atpase regulatory subunit 6 (26s proteasome regulatory subunit s10) (p42a) (proteasome regulatory particle subunit p44s10). [source:swissprot;acc:q15008]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 215.807\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 216.556\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.00347\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2433\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent elongation factor 1-alpha 1 (ef-1-alpha-1) (elongation factor 1 a-1) (eef1a-1) (elongation factor tu) (ef-tu). [source:swissprot;acc:p04720]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 217.366\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 218.117\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.00346\vspace{3pt}}}\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2434\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent methylenetetrahydrofolate reductase (ec 1.5.1.20). [source:swissprot;acc:p42898]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 213.021\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 212.286\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2435\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent zinc-finger protein zpr1 (zinc finger protein 259). [source:swissprot;acc:o75312]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 217.366\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 218.117\vspace{3pt}}}&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2436\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent elongation factor 1-alpha 2 (ef-1-alpha-2) (elongation factor 1 a-2) (eef1a-2) (statin s1). [source:swissprot;acc:q05639]\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2437\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent guanylate kinase (ec 2.7.4.8) (gmp kinase). [source:swissprot;acc:q16774]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 219.361\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 220.116\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.00344\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2438\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent proteasome subunit alpha type 4 (ec 3.4.25.1) (proteasome component c9) (macropain subunit c9) (multicatalytic endopeptidase complex subunit c9) (proteasome subunit l). [source:swissprot;acc:p25789]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 214.049\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 213.323\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0034\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2439\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 14-3-3 protein beta/alpha (protein kinase c inhibitor protein-1) (kcip-1) (protein 1054). [source:swissprot;acc:p31946]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 220.681\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 221.425\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.00337\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2440\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 26s proteasome non-atpase regulatory subunit 3 (26s proteasome regulatory subunit s3) (proteasome subunit p58). [source:swissprot;acc:o43242]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 217.645\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 218.376\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.00336\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2441\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent electron transfer flavoprotein alpha-subunit, mitochondrial precursor (alpha-etf). [source:swissprot;acc:p13804]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 180.137\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 180.732\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0033\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2442\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent transcription initiation factor tfiid 70 kda subunit (tafii-70) (tafii-80) (tafii80). [source:swissprot;acc:p49848]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 204.419\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 203.748\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.00329\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2443\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent ubiquitin-like protein sumo-1 conjugating enzyme (ec 6.3.2.19) (sumo- 1-protein ligase) (ubiquitin carrier protein) (ubiquitin-conjugating enzyme ubce2a) (p18). [source:swissprot;acc:p50550]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 217.073\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 216.364\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.00328\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2444\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent zinc finger protein 288 (dendritic-derived btb/poz zinc finger protein). [source:swissprot;acc:q9hc78]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 206.086\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 206.753\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.00324\vspace{3pt}}}\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2445\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent kruppel-related zinc finger protein hckrox. [source:refseq;acc:nm\_015872]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 206.088\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 206.756\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2446\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent epoxide hydrolase 1 (ec 3.3.2.3) (microsomal epoxide hydrolase) (epoxide hydratase). [source:swissprot;acc:p07099]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 182.272\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 181.683\vspace{3pt}}&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2447\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent peroxisomal targeting signal 2 receptor (pts2 receptor) (peroxin-7). [source:swissprot;acc:o00628]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 206.084\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 206.752\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2448\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent glycine dehydrogenase [decarboxylating], mitochondrial precursor (ec 1.4.4.2) (glycine decarboxylase) (glycine cleavage system p- protein). [source:swissprot;acc:p23378]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 212.446\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 211.766\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.00321\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2449\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent phosphatidate cytidylyltransferase 2 (ec 2.7.7.41) (cdp-diglyceride synthetase 2) (cdp-diglyceride pyrophosphorylase 2) (cdp- diacylglycerol synthase 2) (cds 2) (ctp:phosphatidate cytidylyltransferase 2) (cdp-dag synthase 2) (cdp-dg synthetase 2). [source:swissprot;acc:o95674]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 204.717\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 205.371\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.00319\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2450\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent proteasome subunit beta type 6 precursor (ec 3.4.25.1) (proteasome delta chain) (macropain delta chain) (multicatalytic endopeptidase complex delta chain) (proteasome subunit y). [source:swissprot;acc:p28072]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 213.85\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 213.177\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.00316\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2451\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent secretory carrier-associated membrane protein 2. [source:swissprot;acc:o15127]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 204.688\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 205.333\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.00315\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2452\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent secretory carrier-associated membrane protein 3. [source:swissprot;acc:o14828]\vspace{3pt}}&&&\\\cline{1-2}\cline{4-4} \parbox{\wcA}{\vspace{3pt}\noindent 2453\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent secretory carrier-associated membrane protein 1. [source:swissprot;acc:o15126]\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent 205.332\vspace{3pt}}&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent 2454\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent solute carrier family 13, member 4 (na+/sulfate cotransporter sut-1). [source:swissprot;acc:q9ukg4]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 204.683\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 205.326\vspace{3pt}}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.00314\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2455\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent solute carrier family 13, member 3 (sodium-dependent high-affinity dicarboxylate transporter 2) (na(+)/dicarboxylate cotransporter 3) (nadc-3) (hnadc3). [source:swissprot;acc:q8wwt9]\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent 2456\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent solute carrier family 13, member 1 (renal sodium/sulfate cotransporter) (na(+)/sulfate cotransporter) (hnasi-1). [source:swissprot;acc:q9bzw2]\vspace{3pt}}&&&\\\cline{1-4} \parbox{\wcA}{\vspace{3pt}\noindent 2457\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent vesicle-fusing atpase (ec 3.6.4.6) (vesicular-fusion protein nsf) (n- ethylmaleimide sensitive fusion protein) (nem-sensitive fusion protein). [source:swissprot;acc:p46459]\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 213.588\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 212.92\vspace{3pt}}&\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/