Scientific
MK5 Microarray Data

Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis
These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.
MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.
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Rank Gene Hugo Network Comparison Type description Value Type Interaction Map Filtered red green network_comparison
Results: HTML CSV LaTeX
Showing element 2401 to 2450 of 66312 in total
Filtered: 1

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\def\wcB{0.1\textwidth}
\def\wcC{0.1\textwidth}
\def\wcD{0.1\textwidth}
\def\wcE{0.1\textwidth}
\def\wcF{0.1\textwidth}
\def\wcG{0.1\textwidth}
\def\wcH{0.1\textwidth}
\def\wcI{0.1\textwidth}
\begin{longtable}{|c|c|c|c|c|c|c|c|c|}
\hline
\parbox{\wcA}{\vspace{3pt}\noindent
Rank\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent
Hugo\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Network Comparison Type\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
description\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Value Type\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
Interaction Map\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
red\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
green\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
network\_comparison\vspace{3pt}}\\
\hline
\hline
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
151\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
ABI1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
spectrin sh3 domain binding protein 1; eps8 binding protein; interactor protein ablbp4; abl-interactor protein 1 long; nap1 binding protein. [source:refseq;acc:nm\_005470]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
53603.3\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
47680.8\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.12421\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
C1GALT1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
core1 udp-galactose:n-acetylgalactosamine-alpha-r beta 1,3-galac. [source:refseq;acc:nm\_020156]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
10492.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
9804.73\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
687.67\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
CHRAC1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
chromatin accessibility complex protein 1 (chrac-1) (chrac-15) (huchrac15) (dna polymerase epsilon subunit p15). [source:swissprot;acc:q9nrg0]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
38.8223\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
46.4975\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.1977\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
CLP1\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
pre-mrna cleavage complex ii protein clp1. [source:swissprot;acc:q92989]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
14830.5\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
13050.3\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1780.2\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
CSTF3\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
cleavage stimulation factor subunit 3; cleavage stimulation factor, 3' pre-rna, subunit 3, 77kd. [source:refseq;acc:nm\_001326]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
55463.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
49331.1\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
6132.3\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
CTSZ\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent
cathepsin z precursor (ec 3.4.22.-) (cathepsin x) (cathepsin p). [source:swissprot;acc:q9ubr2]\vspace{3pt}}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
7136.14\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7751.87\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.08628\vspace{3pt}}\\\cline{5-5}\cline{7-9}
&&&&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
206.516\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
194.554\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.06148\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
DNASE2B\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
deoxyribonuclease ii beta isoform 1 precursor; deoxyribonuclease ii beta; endonuclease dlad. [source:refseq;acc:nm\_021233]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
250303\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
354894\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.41786\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
EPHX1\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
epoxide hydrolase 1 (ec 3.3.2.3) (microsomal epoxide hydrolase) (epoxide hydratase). [source:swissprot;acc:p07099]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
87971.9\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
69563.1\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
18408.8\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
HOMER2\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
homer, neuronal immediate early gene, 2; homer homolog 3 (drosophila). [source:refseq;acc:nm\_004839]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
50.3065\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
62.9788\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
12.6723\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
HOXC5\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
homeobox protein hox-c5 (hox-3d) (cp11). [source:swissprot;acc:q00444]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
101.348\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
108.302\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.06862\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
LASS2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
lag1 longevity assurance homolog 2 isoform 1; l3 pigment; tumor metastasis-suppressor. [source:refseq;acc:nm\_022075]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
191.688\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
179.639\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
12.049\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
MYO5C\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
myosin vc (myosin 5c). [source:swissprot;acc:q9nqx4]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
55\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
46\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.19565\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
PRMT8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
protein arginine n-methyltransferase 4 (ec 2.1.1.-). [source:swissprot;acc:q9nr22]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
226.582\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
198.444\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
28.138\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
SH2D3C\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
sh2 domain containing 3c; novel sh2-containing protein 3; sh2 domain-containing 3c; likely ortholog of mouse cas/hef1-associated signal transducer. [source:refseq;acc:nm\_005489]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
4578.09\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
5939.91\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.29746\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
SLC15A2\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
oligopeptide transporter, kidney isoform (peptide transporter 2) (kidney h+/peptide cotransporter) (solute carrier family 15, member 2). [source:swissprot;acc:q16348]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
70.5717\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
75.371\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
4.7993\vspace{3pt}}\\\cline{1-4}\cline{7-9}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
152\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
homeobox protein hox-c6 (hox-3c) (hho.c8) (cp25). [source:swissprot;acc:p09630]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
101.348\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
108.302\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.06862\vspace{3pt}}\\\cline{4-9}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
myosin va (myosin 5a) (dilute myosin heavy chain, non-muscle) (myosin heavy chain 12) (myoxin). [source:swissprot;acc:q9y4i1]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
55\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
46\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.19565\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
ARRB2\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
beta-arrestin 2 (arrestin, beta 2). [source:swissprot;acc:p32121]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
72.4531\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
77.213\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
4.7599\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
COQ7\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
ubiquinone biosynthesis protein coq7 homolog (coenzyme q biosynthesis protein 7 homolog) (timing protein clk-1 homolog). [source:swissprot;acc:q99807]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
50.3247\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
62.9892\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
12.6645\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
CTSL1\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
cathepsin l precursor (ec 3.4.22.15) (major excreted protein) (mep). [source:swissprot;acc:p07711]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
211.808\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
199.761\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
12.047\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
GBAS\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
nipsnap2 protein (glioblastoma amplified sequence). [source:swissprot;acc:o75323]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
5538.35\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
6016.13\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.08627\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
HMG20A\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
high-mobility group 20a. [source:refseq;acc:nm\_018200]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
202.934\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
191.187\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.06144\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
HMG20B\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
high-mobility group 20b; sox-like transcriptional factor; swi/snf-related matrix-associated actin-dependent regulator of chromatin subfamily e, member 1-related. [source:refseq;acc:nm\_006339]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
5136.78\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
6895.98\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1759.2\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
LUC7L2\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
luc7-like 2; cgi-74 protein; cgi-59 protein. [source:refseq;acc:nm\_016019]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
55.2859\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
65.9288\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.19251\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAGED4\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
melanoma antigen, family d, 4 isoform 1; mage1 protein; mage-e1 protein; maged4 protein. [source:refseq;acc:nm\_030801]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
18263\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.29736\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
NCDN\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
neurochondrin. [source:refseq;acc:nm\_014284]\vspace{3pt}}&&\multirow{3}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
10492.4\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
9804.73\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
687.67\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
PFKFB3\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 (6pf-2-k/fru- 2,6-p2ase brain/placenta-type isozyme) (ipfk-2) [includes: 6- phosphofructo-2-kinase (ec 2.7.1.105); fructose-2,6-bisphosphatase (ec 3.1.3.46)]. [source:swissprot;acc:q16875]\vspace{3pt}}&\multirow{4}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
53380.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
47490\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.12404\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
RNF40\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
ring finger protein 40; 95 kda retinoblastoma protein binding protein; likely ortholog of rat staring. [source:refseq;acc:nm\_014771]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
54898\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
48821.9\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
6076.1\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
SEPT8\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
septin-like protein kiaa0202 (fragment). [source:swissprot;acc:q92599]\vspace{3pt}}&&\multirow{6}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
90226\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
126939\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.4069\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
SLC15A1\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
oligopeptide transporter, small intestine isoform (peptide transporter 1) (intestinal h+/peptide cotransporter) (solute carrier family 15, member 1). [source:swissprot;acc:p46059]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
73995.1\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
56003.7\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
17991.4\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
SNRP70\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
u1 small nuclear ribonucleoprotein 70 kda (u1 snrnp 70 kda) (snrnp70) (u1-70k). [source:swissprot;acc:p08621]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
226.582\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
198.444\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
28.138\vspace{3pt}}\\\cline{1-5}\cline{7-9}
\multirow{16}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
153\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
ret finger protein 2 (leukemia associated protein 5) (b-cell chronic lymphocytic leukemia tumor suppressor leu5) (putative tumor suppressor rfp2) (tripartite motif protein 13). [source:swissprot;acc:o60858]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
70011\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
49783\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.40632\vspace{3pt}}\\\cline{3-5}\cline{7-9}
&&\multirow{5}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
filamin a (alpha-filamin) (filamin 1) (endothelial actin-binding protein) (abp-280) (nonmuscle filamin). [source:swissprot;acc:p21333]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
226.582\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
198.444\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
28.138\vspace{3pt}}\\\cline{4-5}\cline{7-9}
&&&\parbox{\wcD}{\vspace{3pt}\noindent
myosin heavy chain, cardiac muscle alpha isoform (myhc-alpha). [source:swissprot;acc:p13533]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
9035\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
7279.6\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1755.4\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
ABRA\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
striated muscle activator of rho-dependent signaling. [source:refseq;acc:nm\_139166]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
65.2217\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
69.9574\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
4.7357\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
CPSF1\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
cleavage and polyadenylation specificity factor, 160 kda subunit (cpsf 160 kda subunit). [source:swissprot;acc:q10570]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
56828\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
50808.5\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
6019.5\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
HOMER1\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
homer, neuronal immediate early gene, 1b. [source:refseq;acc:nm\_004272]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
50.3333\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
62.9942\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
12.6609\vspace{3pt}}\\\cline{2-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
HOXD4\vspace{3pt}}&\multirow{5}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
homeobox protein hox-d4 (hox-4b) (hox-5.1) (hho.c13). [source:swissprot;acc:p09016]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
101.348\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
108.302\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.06862\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
LUC7L\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
luc7-like; sarcoplasmic reticulum protein luc7b1. [source:refseq;acc:nm\_018032]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
55.297\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
65.9236\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.19217\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
MAGEE2\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
hepatocellular carcinoma-associated protein hca3. [source:refseq;acc:nm\_138703]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
18263\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.29736\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
NIPSNAP1\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
nipsnap1 protein. [source:swissprot;acc:q9bpw8]\vspace{3pt}}&&\multirow{4}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
5544.97\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
6022.42\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.08611\vspace{3pt}}\\\cline{2-2}\cline{4-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
PFKFB1\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 (6pf-2-k/fru- 2,6-p2ase liver isozyme) [includes: 6-phosphofructo-2-kinase (ec 2.7.1.105); fructose-2,6-bisphosphatase (ec 3.1.3.46)]. [source:swissprot;acc:p16118]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
53380.6\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
47490\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.12404\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
PLK1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
serine/threonine-protein kinase plk (ec 2.7.1.-) (plk-1) (serine- threonine protein kinase 13) (stpk13). [source:swissprot;acc:p53350]\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Ranked\vspace{3pt}}}&&\parbox{\wcG}{\vspace{3pt}\noindent
206.516\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
194.554\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
11.962\vspace{3pt}}\\\cline{2-4}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
RAB11FIP4\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
rab11-family interacting protein 4. [source:refseq;acc:nm\_032932]\vspace{3pt}}&&&\parbox{\wcG}{\vspace{3pt}\noindent
183.27\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
172.702\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.06119\vspace{3pt}}\\\cline{2-2}\cline{4-4}\cline{6-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
RBM15B\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
chromosome 3p21.1 gene sequence. [source:refseq;acc:nm\_013286]\vspace{3pt}}&&\multirow{2}{*}{\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}}&\parbox{\wcG}{\vspace{3pt}\noindent
249.663\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
298.263\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.19466\vspace{3pt}}\\\cline{2-5}\cline{7-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
SLC15A2\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}}&\parbox{\wcD}{\vspace{3pt}\noindent
oligopeptide transporter, kidney isoform (peptide transporter 2) (kidney h+/peptide cotransporter) (solute carrier family 15, member 2). [source:swissprot;acc:q16348]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Squared\vspace{3pt}}&&\parbox{\wcG}{\vspace{3pt}\noindent
73510.2\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
55607.3\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
17902.9\vspace{3pt}}\\\cline{2-2}\cline{4-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
UBE1C\vspace{3pt}}&&\parbox{\wcD}{\vspace{3pt}\noindent
ubiquitin-activating enzyme e1c (uba3 homolog, yeast); ubiquitin-activating enzyme e1c (homologous to yeast uba3). [source:refseq;acc:nm\_003968]\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent
Measured\vspace{3pt}}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
7628.44\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
8310.74\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
682.3\vspace{3pt}}\\\cline{1-4}\cline{6-9}
\multirow{2}{*}{\parbox{\wcA}{\vspace{3pt}\noindent
154\vspace{3pt}}}&\parbox{\wcB}{\vspace{3pt}\noindent
\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Divided\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
melanoma-associated antigen 3 (mage-3 antigen) (antigen mz2-d). [source:swissprot;acc:p43357]\vspace{3pt}}&&\parbox{\wcF}{\vspace{3pt}\noindent
High confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
23693.7\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
18263\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
1.29736\vspace{3pt}}\\\cline{2-9}
&\parbox{\wcB}{\vspace{3pt}\noindent
ARRB1\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent
Subtracted\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent
beta-arrestin 1 (arrestin, beta 1). [source:swissprot;acc:p49407]\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent
Rooted\vspace{3pt}}&\parbox{\wcF}{\vspace{3pt}\noindent
Low confidence\vspace{3pt}}&\parbox{\wcG}{\vspace{3pt}\noindent
72.4389\vspace{3pt}}&\parbox{\wcH}{\vspace{3pt}\noindent
77.1711\vspace{3pt}}&\parbox{\wcI}{\vspace{3pt}\noindent
4.7322\vspace{3pt}}\\\hline
nd{longtable}

Legend:
- Rank is the rank after comparing the two networks

 - Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray

 - Hugo is the HGNC identifier if it exists

 - Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.

 - Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them

 - Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.

 - Filtered specifies whether we only included the high confidence microarry measurements or not.
- http://analysis.yellowcouch.org/