Scientific

MK5 Microarray Data


Affected Genes - Ontology Breakdown - Gene Enrichment - Proteome Analysis

These are the micro-array results of a differential gene expression microarray experiments and the subsequent analysis steps performed on them. The up/down- regulation ratio was obtained by measuring WT cells against MK5 activated cells. See material and methods for technical information as well as the data usage policy.

MK5 Proteome Analysis

Table 3: Type II network, divided ranks. This table presents the output of the simulation of a type-II network in which we relied on the high confidence interactions and micro-array results. The output of the micro-array was then ranked and these ranks used as input into the network simulation. After performing two such simulations (one for the MK5 off and one for the MK5 on microarray output), we divided the ranks and sorted the results accordingly. The output of this technique is a collection of proteins that cluster naturally together.


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Value Type description Rank Interaction Map Gene Network Comparison Type Filtered green red network_comparison
Results: HTML CSV LaTeX Showing element 2201 to 2250 of 3228 in total
Value Type: Measured
Interaction Map: High confidence
Network Comparison Type: Divided
Filtered: 1
\def\wcA{0.16666666666667\textwidth} \def\wcB{0.16666666666667\textwidth} \def\wcC{0.16666666666667\textwidth} \def\wcD{0.16666666666667\textwidth} \def\wcE{0.16666666666667\textwidth} \begin{longtable}{|c|c|c|c|c|} \hline \parbox{\wcA}{\vspace{3pt}\noindent description\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent Rank\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent green\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent red\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent network\_comparison\vspace{3pt}}\\ \hline \hline \parbox{\wcA}{\vspace{3pt}\noindent protein phosphatase 1, regulatory (inhibitor) subunit 12b isoform a; myosin phosphatase regulatory subunit; myosin phosphatase, target subunit 2. [source:refseq;acc:nm\_002481]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1566\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6269.41\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5846.67\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0723\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protein phosphatase 1, regulatory (inhibitor) subunit 13b; apoptosis-stimulating protein of p53, 1. [source:refseq;acc:nm\_015316]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 490\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 13346.9\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 15274.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.14445\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protein phosphatase 1, regulatory (inhibitor) subunit 14a; 17-kda pkc-potentiated inhibitory protein of pp1. [source:refseq;acc:nm\_033256]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 18\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 1865.5\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 677.5\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 2.75351\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent protein phosphatase 1, regulatory (inhibitor) subunit 14c; serologically defined breast cancer antigen ny-br-81; pkc-potentiated pp1 inhibitory protein. [source:refseq;acc:nm\_030949]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 22\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent protein phosphatase 1, regulatory subunit 14d; pkc-dependent pp1 inhibitory protein. [source:refseq;acc:nm\_017726]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 20\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protein phosphatase 1, regulatory subunit 7; sds22. [source:refseq;acc:nm\_002712]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 238\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 22440.4\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 27642.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.23182\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protein phosphatase 2c beta isoform (ec 3.1.3.16) (pp2c-beta). [source:swissprot;acc:o75688]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 527\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5438.18\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4775.11\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.13886\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protein phosphatase inhibitor 2 (ipp-2). [source:swissprot;acc:p41236]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 313\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 18098.7\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 21644.2\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.1959\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protein regulator of cytokinesis 1; protein regulating cytokinesis 1. [source:refseq;acc:nm\_003981]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1887\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5783.11\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5438.6\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06335\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protein sck (fragment). [source:swissprot;acc:p98077]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1827\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5997\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5633.44\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06454\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protein tara (trio-associated repeat on actin) (hrihfb2122). [source:swissprot;acc:q9h2d6]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2576\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5712.39\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5608.22\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.01857\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protein translation factor sui1 homolog (sui1iso1). [source:swissprot;acc:p41567]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2023\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3364.84\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3560.24\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05807\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protein translation factor sui1 homolog gc20. [source:swissprot;acc:o60739]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1988\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3360.39\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3559.49\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.05925\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protein transport protein sec23a (sec23-related protein a). [source:swissprot;acc:q15436]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 3135\vspace{3pt}}&\multirow{6}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}}&\multirow{6}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent protein transport protein sec23b (sec23-related protein b). [source:swissprot;acc:q15437]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 3127\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent protein transport protein sec24a (sec24-related protein a) (fragment). [source:swissprot;acc:o95486]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 3056\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent protein transport protein sec24b (sec24-related protein b). [source:swissprot;acc:o95487]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2956\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent protein transport protein sec24c (sec24-related protein c). [source:swissprot;acc:p53992]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2910\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent protein transport protein sec24d (sec24-related protein d). [source:swissprot;acc:o94855]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2903\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protein transport protein sec61 alpha subunit isoform 1 (sec61 alpha- 1). [source:swissprot;acc:p38378]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2079\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 3423.89\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 3614.91\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.05579\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent protein transport protein sec61 alpha subunit isoform 2 (sec61 alpha- 2). [source:swissprot;acc:q9y2r3]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2078\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protein transport protein sec61 gamma subunit. [source:swissprot;acc:p38384]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2265\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 3453.39\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 3612.45\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.04606\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protein x 0001. [source:refseq;acc:nm\_016302]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1582\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6833.59\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6376.12\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07175\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protein x 0004. [source:refseq;acc:nm\_016301]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 16\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 871\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 2671\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 3.06659\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protein-tyrosine phosphatase beta precursor (ec 3.1.3.48) (r-ptp- beta). [source:swissprot;acc:p23467]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 538\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 12069.4\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 10603.5\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.13825\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protein-tyrosine phosphatase, non-receptor type 1 (ec 3.1.3.48) (protein-tyrosine phosphatase 1b) (ptp-1b). [source:swissprot;acc:p18031]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1247\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6807.51\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6278.76\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.08421\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protein-tyrosine phosphatase, non-receptor type 11 (ec 3.1.3.48) (protein-tyrosine phosphatase 2c) (ptp-2c) (ptp-1d) (sh-ptp3) (sh- ptp2) (shp-2). [source:swissprot;acc:q06124]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2789\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protein-tyrosine phosphatase, non-receptor type 2 (ec 3.1.3.48) (t- cell protein-tyrosine phosphatase) (tcptp). [source:swissprot;acc:p17706]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1248\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6803.95\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6275.86\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.08415\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent proto-oncogene c-crk (p38) (adapter molecule crk). [source:swissprot;acc:p46108]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 248\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7859.6\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6417.18\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.22477\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent proto-oncogene protein c-fos (cellular oncogene fos) (g0/g1 switch regulatory protein 7). [source:swissprot;acc:p01100]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 83\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7033.29\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4932.27\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.42597\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent proto-oncogene tyrosine-protein kinase abl1 (ec 2.7.1.112) (p150) (c-abl). [source:swissprot;acc:p00519]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 253\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 7859.59\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 6417.18\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.22477\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent proto-oncogene tyrosine-protein kinase fer (ec 2.7.1.112) (p94-fer) (c-fer). [source:swissprot;acc:p16591]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1649\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 6503.12\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6079.19\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.06973\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent proto-oncogene tyrosine-protein kinase fes/fps (ec 2.7.1.112) (c-fes). [source:swissprot;acc:p07332]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1645\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent proto-oncogene tyrosine-protein kinase fgr (ec 2.7.1.112) (p55-fgr) (c-fgr). [source:swissprot;acc:p09769]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 255\vspace{3pt}}&\multirow{3}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 7859.6\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6417.18\vspace{3pt}}}&\multirow{3}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.22477\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent proto-oncogene tyrosine-protein kinase fyn (ec 2.7.1.112) (p59-fyn) (syn) (slk). [source:swissprot;acc:p06241]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 254\vspace{3pt}}&&&\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent proto-oncogene tyrosine-protein kinase src (ec 2.7.1.112) (p60-src) (c-src). [source:swissprot;acc:p12931]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 250\vspace{3pt}}&&&\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protocadherin 15 precursor. [source:swissprot;acc:q96qu1]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1181\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4776.19\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4392.63\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.08732\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protocadherin 16 precursor (cadherin 19) (cadherin fibroblast 1). [source:swissprot;acc:q96jq0]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2838\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protocadherin fat 2 precursor (hfat2) (multiple epidermal growth factor-like domains 1). [source:swissprot;acc:q9nyq8]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1722\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5830.76\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5458.12\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.06827\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protoheme ix farnesyltransferase, mitochondrial precursor (ec 2.5.1.-) (heme o synthase). [source:swissprot;acc:q12887]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 933\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6194.04\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5638.46\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.09853\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent protoporphyrinogen oxidase (ec 1.3.3.4) (ppo). [source:swissprot;acc:p50336]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2934\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent prp18 pre-mrna processing factor 18 homolog. [source:refseq;acc:nm\_003675]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2707\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 9012.31\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 8979.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.00364\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent ptb domain adaptor protein ced-6; engulfment adapter protein. [source:refseq;acc:nm\_016315]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 364\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6088.47\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5189\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.17334\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent ptd016 protein. [source:refseq;acc:nm\_016125]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 3093\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 0.00001\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent purine nucleoside phosphorylase (ec 2.4.2.1) (inosine phosphorylase) (pnp). [source:swissprot;acc:p00491]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1444\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 5869.07\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5450.9\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.07672\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent puromycin-sensitive aminopeptidase (ec 3.4.11.-) (psa). [source:swissprot;acc:p55786]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 828\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6354.75\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5745.61\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.10602\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent putatative 28 kda protein. [source:refseq;acc:nm\_020143]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 2747\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 4702.58\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 4708.68\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0013\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent putative acyl-coa thioester hydrolase cgi-16 (ec 3.1.2.-). [source:swissprot;acc:q9y305]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 1060\vspace{3pt}}&\parbox{\wcC}{\vspace{3pt}\noindent 6248.6\vspace{3pt}}&\parbox{\wcD}{\vspace{3pt}\noindent 5719.01\vspace{3pt}}&\parbox{\wcE}{\vspace{3pt}\noindent 1.0926\vspace{3pt}}\\\hline \parbox{\wcA}{\vspace{3pt}\noindent putative adenosylhomocysteinase 2 (ec 3.3.1.1) (s-adenosyl-l- homocysteine hydrolase) (adohcyase). [source:swissprot;acc:o43865]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 626\vspace{3pt}}&\multirow{2}{*}{\parbox{\wcC}{\vspace{3pt}\noindent 7013.19\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcD}{\vspace{3pt}\noindent 6228.39\vspace{3pt}}}&\multirow{2}{*}{\parbox{\wcE}{\vspace{3pt}\noindent 1.126\vspace{3pt}}}\\\cline{1-2} \parbox{\wcA}{\vspace{3pt}\noindent putative adenosylhomocysteinase 3 (ec 3.3.1.1) (s-adenosyl-l- homocysteine hydrolase) (adohcyase). [source:swissprot;acc:q96hn2]\vspace{3pt}}&\parbox{\wcB}{\vspace{3pt}\noindent 628\vspace{3pt}}&&&\\\hline nd{longtable}
Legend:
- Rank is the rank after comparing the two networks
- Gene is the ensembl human gene identifier measured by 1 or more probes on the microarray
- Value Type describes how the microarray measurement was processed. Ranked indicates that we sorted all measurements and use the rank as red and green value. Measured is the normal measurement. Squared and Rooted are the square and square root respecitcely. This might be valueable to compensate for non linear light distributions.
- Network Comparison Type describes whether we divided the red and green types or whether we sutractcted them
- Interaction Map specifies whether we used only the hig hconfidence protein-protein interactions or also included the low confidence interactions.
- Filtered specifies whether we only included the high confidence microarry measurements or not.

- http://analysis.yellowcouch.org/